Structure Content
Department: Structural Biology and Chemistry
All Publications
2025
Nourisson Antonin, Sophia Missoury, Soizick Lucas-Staat, Ahmed Haouz, Delarue Marc,
Fidelity, specialization, and evolution of Paramecium PolX DNA polymerases involved in programmed double-strand break DNA repair,
Nucleic Acids Research, 2025, 53 (15), pp.gkaf786. ⟨10.1093/nar/gkaf786⟩.
2025
Jean Guillon, Solène Savrimoutou, Nicolas da Rocha, Sandra Albenque-Rubio, Olivier Helynck, Cyrielle Durand, Jeanne Chiaravalli, Noël Pinaud, Luisa Ronga, Stéphane Moreau, Simon Chirold, Tshering Zangmo, Melika Arab, Lindita Lari, Jean‐louis Mergny, Hélène Munier-Lehmann, Marc Lavigne,
Design, synthesis, biophysical and biological evaluation of original condensed pyrrolopyrimidine and pyrrolopyridine ligands as anti-SARS-CoV-2 agents targeting G4,
European Journal of Medicinal Chemistry, 2025, 292, pp.117655. ⟨10.1016/j.ejmech.2025.117655⟩.
2025
Cyril Savin, Pierre Lê-Bury, Julien Guglielmini, Thibaut Douché, Guillem Mas Fiol, Rodolphe Buzelé, Cécile Le Brun, Frédéric Bastides, Maud François, Béatrice Birmelé, Laura Guichard, Julien Madej, Rémi Beau, Nicolas Cabanel, Laurent Dortet, Mariette Matondo, Olivier Dussurget, Elisabeth Carniel, Philippe Lanotte, Javier Pizarro-Cerdá,
In-host evolution of Yersinia enterocolitica during a chronic human infection,
Nature Communications, 2025, 16 (1), pp.5637. ⟨10.1038/s41467-025-60782-6⟩.
2025
Diana P Baquero, Guillaume Borrel, Anastasia Gazi, Camille Martin-Gallausiaux, Virginija Cvirkaite-Krupovic, Pierre-Henri Commere, Nika Pende, Stéphane Tachon, Anna Sartori-Rupp, Thibaut Douché, Mariette Matondo, Simonetta Gribaldo, Mart Krupovic,
Biogenesis of DNA-carrying extracellular vesicles by the dominant human gut methanogenic archaeon,
Nature Communications, 2025, 16 (1), pp.5093. ⟨10.1038/s41467-025-60272-9⟩.
2025
Mathilde Briday, Nicolas Carvalho, Natalia Oganesyan, Min-Ju Chang, Andrew Lees, Sébastien Brier, Alexandre Chenal,
Comparative analysis of the structural dynamics of diphtheria toxin and CRM197 carrier proteins used in the development of conjugate vaccines,
International Journal of Pharmaceutics, 2025, 675, pp.125535. ⟨10.1016/j.ijpharm.2025.125535⟩.
2025
Jean Contreras, Sophie Vichier-Guerre, Laurence Dugué, Frédéric Bonhomme, Corinne Jallet, Minh-Ha Nguyen, Bruno Vitorge, Alessandra Feoli, Gianluca Sbardella, J. I. Guijarro, Paola B Arimondo,
In Quest of Chemical Probes for DNA Methylation Reader Proteins: Nucleoside and Dimer Analogues of 5‐Methylcytosine Interact with MBD2,
Angewandte Chemie International Edition, In press, pp.e202425599. ⟨10.1002/anie.202425599⟩.
2025
Paul Haase, Angga Perima, Venkat Raman Ramnarayan, Patrick England, Bruno Iannascoli, Andre Limnander, Seblewongel Asrat, Andrea Vecchione, Jamie M Orengo, Matthew A Sleeman, Pierre Bruhns,
Anatomical Distribution and Quantification of IgE Secretion in Mouse Models of House Dust Mite Allergy,
Allergy, In press, ⟨10.1111/all.16546⟩.
2025
Jessica Rossello, Bernardina Rivera, Maximiliano Anzibar Fialho, Ingrid Augusto, Magdalena Gil, Marina Andrea Forrellad, Fabiana Bigi, Azalia Rodríguez Taño, Estefanía Urdániz, Mariana Piuri, Kildare Miranda, Anne Marie Wehenkel, Pedro Maria Alzari, Leonel Malacrida, Rosario Durán,
FhaA plays a key role in mycobacterial polar elongation and asymmetric growth,
mBio, 2025, 16 (3), ⟨10.1128/mbio.02526-24⟩.
2025
Rémi Sieskind, Sophia Missoury, Clément Madru, Isciane Commenge, Germain Niogret, Marcel Hollenstein, Yannick Rondelez, Ludovic Sauguet, Ahmed Haouz, Pierre Legrand, Marc Delarue,
Crystal structures of monomeric BsmI restriction endonuclease reveal coordinated sequential cleavage of two DNA strands,
Communications Biology, 2025, 8 (1), pp.387. ⟨10.1038/S42003-025-07612-Z⟩.
2024
Kamolrat Somboon, Oliver Melling, Maylis Lejeune, Glaucia M S Pinheiro, Annick Paquelin, Benjamin Bardiaux, Michael Nilges, Phillippe Delepelaire, Syma Khalid, Nadia Izadi-Pruneyre,
Dynamic interplay between a TonB-dependent heme transporter and a TonB protein in a membrane environment,
mBio, In press, pp.e0178124. ⟨10.1128/mbio.01781-24⟩.
2024
Roberto Notario Manzano, Thibault Chaze, Eric Rubinstein, Esthel Pénard, Mariette Matondo, Chiara Zurzolo, Christel Brou,
Proteomic landscape of tunneling nanotubes reveals CD9 and CD81 tetraspanins as key regulators,
eLife, 2024, 13, pp.RP99172. ⟨10.7554/eLife.99172⟩.
2024
Jill-Léa Ramassamy, Ahidjo Ayouba, Guillaume Thaurignac, Chanceline Bilounga Ndongo, Patrick Nnuka, Edouard Betsem, Richard Njouom, Eitel Mpoudi Ngole, Jessica Vanhomwegen, Damien Hoinard, Patrick England, Alexandra Journeaux, Caroline Picard, Damien Thomas, Delphine Pannetier, Sylvain Baize, Eric Delaporte, Martine Peeters, Antoine Gessain,
High seroreactivities to orthoebolaviruses in rural Cameroon: a case-control study on non-human primate bites and a cross-sectional survey in rural population,
Journal of Infectious Diseases, 2024, pp.jiae399. ⟨10.1093/infdis/jiae399⟩.
2024
Cristiano da Silva Lameira, Sini Münßinger, Lu Yang, Bernhard Eikmanns, Marco Bellinzoni,
Corynebacterium glutamicum pyruvate:quinone oxidoreductase: an enigmatic metabolic enzyme with unusual structural features,
FEBS Journal, In press, ⟨10.1111/febs.17232⟩.
2024
Patrice Koehl, Rafael Navaza, Mustafa Tekpinar, Marc Delarue,
MinActionPath2: path generation between different conformations of large macromolecular assemblies by action minimization,
Nucleic Acids Research, 2024, pp.gkae421. ⟨10.1093/nar/gkae421⟩.
2024
Alexandra Moine-Franel, Fabien Mareuil, Michael Nilges, Constantin Bogdan Ciambur, Olivier Sperandio,
A comprehensive dataset of protein-protein interactions and ligand binding pockets for advancing drug discovery,
Scientific Data , 2024, 11 (1), pp.402. ⟨10.1038/s41597-024-03233-z⟩.
2024
David Fernandez-Martinez, Youxin Kong, Sylvie Goussard, Agustin Zavala, Pauline Gastineau, Martial Jean-Pierre Rey, Gabriel Ayme, Julia Chamot‐rooke, Pierre Lafaye, Matthijn Vos, Ariel Mechaly, Guillaume Duménil,
Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms,
Nature Communications, 2024, 15 (1), pp.2414. ⟨10.1038/s41467-024-46677-y⟩.
2024
Anna Pepe, Johannes Groen, Chiara Zurzolo, Anna Sartori-Rupp,
Correlative cryo-microscopy pipelines for in situ cellular studies,
Correlative Light and Electron Microscopy V, 187, Elsevier, pp.175-203, 2024, Methods in Cell Biology, 978-0-323-95141-8. ⟨10.1016/bs.mcb.2024.02.038⟩.
2024
Johannes Schimunek, Philipp Seidl, Katarina Elez, Tim Hempel, Tuan Le, Frank Noé, Simon Olsson, Lluís Raich, Robin Winter, Hatice Gokcan, Filipp Gusev, Evgeny Gutkin, Olexandr Isayev, Maria Kurnikova, Chamali Narangoda, Roman Zubatyuk, Ivan Bosko, Konstantin Furs, Anna Karpenko, Yury Kornoushenko, Mikita Shuldau, Artsemi Yushkevich, Mohammed Benabderrahmane, Patrick Bousquet-Melou, Ronan Bureau, Beatrice Charton, Bertrand Cirou, Gérard Gil, William Allen, Suman Sirimulla, Stanley Watowich, Nick Antonopoulos, Nikolaos Epitropakis, Agamemnon Krasoulis, Vassilis Pitsikalis, Stavros Theodorakis, Igor Kozlovskii, Anton Maliutin, Alexander Medvedev, Petr Popov, Mark Zaretckii, Hamid Eghbal-Zadeh, Christina Halmich, Sepp Hochreiter, Andreas Mayr, Peter Ruch, Michael Widrich, Francois Berenger, Ashutosh Kumar, Yoshihiro Yamanishi, Kam Zhang, Emmanuel Bengio, Yoshua Bengio, Moksh Jain, Maksym Korablyov, Cheng-Hao Liu, Marcous Gilles, Enrico Glaab, Kelly Barnsley, Suhasini Iyengar, Mary Jo Ondrechen, V. Joachim Haupt, Florian Kaiser, Michael Schroeder, Luisa Pugliese, Simone Albani, Christina Athanasiou, Andrea Beccari, Paolo Carloni, Giulia d'Arrigo, Eleonora Gianquinto, Jonas Goßen, Anton Hanke, Benjamin Joseph, Daria Kokh, Sandra Kovachka, Candida Manelfi, Goutam Mukherjee, Abraham Muñiz-Chicharro, Francesco Musiani, Ariane Nunes-Alves, Giulia Paiardi, Giulia Rossetti, S. Kashif Sadiq, Francesca Spyrakis, Carmine Talarico, Alexandros Tsengenes, Rebecca Wade, Conner Copeland, Jeremiah Gaiser, Daniel Olson, Amitava Roy, Vishwesh Venkatraman, Travis Wheeler, Haribabu Arthanari, Klara Blaschitz, Marco Cespugli, Vedat Durmaz, Konstantin Fackeldey, Patrick Fischer, Christoph Gorgulla, Christian Gruber, Karl Gruber, Michael Hetmann, Jamie Kinney, Krishna Das, Shreya Pandita, Amit Singh, Georg Steinkellner, Guilhem Tesseyre, Gerhard Wagner, Zi-Fu Wang, Ryan Yust, Dmitry Druzhilovskiy, Dmitry Filimonov, Pavel Pogodin, Vladimir Poroikov, Anastassia Rudik, Leonid Stolbov, Alexander Veselovsky, Maria de Rosa, Giada De Simone, Maria Gulotta, Jessica Lombino, Nedra Mekni, Ugo Perricone, Arturo Casini, Amanda Embree, D. Benjamin Gordon, David Lei, Katelin Pratt, Christopher Voigt, Kuang-Yu Chen, Yves Jacob, Tim Krischuns, Pierre Lafaye, Agnès Zettor, M. Luis Rodríguez, Kris White, Daren Fearon, Frank von Delft, Martin Walsh, Dragos Horvath, Charles Brooks, Babak Falsafi, Bryan Ford, Adolfo García-Sastre, Sang Yup Lee, Nadia Naffakh, Alexandre Varnek, Guenter Klambauer, Thomas Hermans,
A community effort in SARS-CoV-2 drug discovery.,
Molecular Informatics, 2024, 43 (1), pp.e202300262. ⟨10.1002/minf.202300262⟩.
2023
J Michael Henderson, Nina Ljubojevic, Sevan Belian, Thibault Chaze, Daryl Castaneda, Aude Battistella, Quentin Giai Gianetto, Mariette Matondo, Stéphanie Descroix, Patricia Bassereau, Chiara Zurzolo,
Tunnelling nanotube formation is driven by Eps8/IRSp53‐dependent linear actin polymerization,
EMBO Journal, 2023, pp.e113761. ⟨10.15252/embj.2023113761⟩.
2023
Gisele Cardoso de Amorim, Benjamin Bardiaux, Nadia Izadi-Pruneyre,
Structural Analysis of Proteins from Bacterial Secretion Systems and Their Assemblies by NMR Spectroscopy,
Bacterial Secretion Systems, 2715, Springer US, pp.503-517, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-3445-5_30⟩.
2023
Magda Teixeira Nunes, Pascal Retailleau, Dorothée Raoux-Barbot, Martine Comisso, Anani Amegan Missinou, Christophe Velours, Stéphane Plancqueel, Daniel Ladant, Undine Mechold, Louis Renault,
Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin,
PLoS Pathogens, 2023, 19 (9), pp.e1011654. ⟨10.1371/journal.ppat.1011654⟩.
2023
E. Crampon, E. Covernton, M. Vaney, M. Dellarole, S. Sommer, A. Sharma, Ahmed Haouz, Patrick England, J. Lepault, S. Duquerroy, F. Rey, Giovanna Barba-Spaeth,
New insight into flavivirus maturation from structure/function studies of the yellow fever virus envelope protein complex,
mBio, In press, ⟨10.1128/mbio.00706-23⟩.
2023
Céline Cuche, Marta Mastrogiovanni, Marie Juzans, Hélène Laude, Marie-Noëlle Ungeheuer, Daniel Krentzel, Maria Isabella Gariboldi, Daniel Scott-Algara, Marianne Madec, Sophie Goyard, Camille Floch, Gaëlle Chauveau-Le Friec, Pierre Lafaye, Charlotte Renaudat, Muriel Le Bidan, Christine Micallef, Sandrine Schmutz, Sébastien Mella, Sophie Novault, Milena Hasan, Darragh Duffy, Vincenzo Di Bartolo, Andrés Alcover,
T cell migration and effector function differences in familial adenomatous polyposis patients with APC gene mutations,
Frontiers in Immunology, 2023, 14, pp.1163466. ⟨10.3389/fimmu.2023.1163466⟩.
2023
Soraya Matczak, Valérie Bouchez, Pauline Leroux, Thibaut Douché, Nils Collinet, Annie Landier, Quentin Giai Gianetto, Sophie Guillot, Julia Chamot-Rooke, Milena Hasan, Mariette Matondo, Sylvain Brisse, Julie Toubiana,
Biological differences between FIM2 and FIM3 fimbriae of Bordetella pertussis: not just the serotype,
Microbes and Infection, 2023, pp.105152. ⟨10.1016/j.micinf.2023.105152⟩.
2022
Fernando Vilela, Armel Bezault, Borja Rodriguez de Francisco, Cécile Sauvanet, Xiao-Ping Xu, Mark Swift, Yong Yao, Francesca Marrasi, Dorit Hanein, Niels Volkmann,
Characterization of heterogeneity in nanodisc samples using Feret signatures,
Journal of Structural Biology, 2022, 214 (4), pp.107916. ⟨10.1016/j.jsb.2022.107916⟩.
2022
Liam Dow, Guido Gaietta, Yair Kaufman, Mark Swift, Moara Lemos, Kerry Lane, Matthew Hopcroft, Armel Bezault, Cécile Sauvanet, Niels Volkmann, Beth Pruitt, Dorit Hanein,
Morphological control enables nanometer-scale dissection of cell-cell signaling complexes,
Nature Communications, 2022, 13 (1), pp.7831. ⟨10.1038/s41467-022-35409-9⟩.
2022
Borja Rodríguez de Francisco, Armel Bezault, Xiao-Ping Xu, Dorit Hanein, Niels Volkmann,
MEPSi: A tool for simulating tomograms of membrane-embedded proteins,
Journal of Structural Biology, 2022, 214 (4), pp.107921. ⟨10.1016/j.jsb.2022.107921⟩.
2021
Virginie Stévenin, Quentin Giai Gianetto, Magalie Duchateau, Mariette I Matondo, Jost Enninga, Yuen-Yan Chang,
Purification of infection-associated macropinosomes by magnetic isolation for proteomic characterization,
Nature Protocols, 2021, 16 (11), pp.5220-5249. ⟨10.1038/s41596-021-00610-5⟩.
2021
Nika Pende, Adrià Sogues, Daniela Megrian, Anna Sartori-Rupp, Patrick England, Hayk Palabikyan, Simon K. -M. R Rittmann, Martín Graña, Anne Marie Wehenkel, Pedro M. Alzari, Simonetta Gribaldo,
SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system,
Nature Communications, 2021, 12 (1), pp.3214. ⟨10.1038/s41467-021-23099-8⟩.
2021
Sleiman D, Garcia PS, Lagune M, Loc'h J, Haouz A, Taib N, Röthlisberger P, Gribaldo S, Marlière P, Kaminski PA,
A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes,
Science, 2021, 372 (6541), pp.516-520. ⟨10.1126/science.abe6494⟩.
2020
Cyril Addi, Adrien Presle, Stéphane Frémont, Frédérique Cuvelier, Murielle Rocancourt, Florine Milin, Sandrine Schmutz, Julia Chamot-Rooke, Thibaut Douche, Magalie Duchateau, Quentin Giai Gianetto, Audrey Salles, Hervé Ménager, Mariette Matondo, Pascale Zimmermann, Neetu Gupta-Rossi, Arnaud Echard,
The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis,
Nature Communications, 2020, 11 (1), pp.1941. ⟨10.1038/s41467-020-15205-z⟩.
2019
Karine Nozeret, Alix Boucharlat, Fabrice Agou, Nienke Buddelmeijer,
A sensitive fluorescence-based assay to monitor enzymatic activity of the essential integral membrane protein Apolipoprotein N-acyltransferase (Lnt),
Scientific Reports, 2019, 9 (1), pp.15978. ⟨10.1038/s41598-019-52106-8⟩.
2017
Amel Bahloul, Elise Pepermans, Bertrand Raynal, Nicolas Wolff, Florence Cordier, Patrick England, Sylvie Nouaille, Bruno Baron, Aziz El-Amraoui, Jean-Pierre Hardelin, Dominique Durand, Christine Petit,
Conformational switch of harmonin, a submembrane scaffold protein of the hair cell mechanoelectrical transduction machinery,
FEBS Letters, 2017, 591 (15), pp.2299 - 2310. ⟨10.1002/1873-3468.12729⟩.
2016
Janine Scholefield, Ricardo Henriques, Anca Savulescu, Elisabeth Fontan, Alix F Boucharlat, Emmanuel Laplantine, Asma Smahi, Alain Israël, Fabrice Agou, Musa M Mhlanga,
Super-resolution microscopy reveals a preformed NEMO lattice structure that is collapsed in incontinentia pigmenti,
Nature Communications, 2016, 7, pp.12629. ⟨10.1038/ncomms12629⟩.
2015
Dominique Clermont, Maite Gomard, Sylviane Hamon, Isabelle Bonne, José-Carlos Fernandez, Richard Wheeler, Christian Malosse, Julia Chamot-Rooke, Simonetta Gribaldo, Ivo Gomperts Boneca, Chantal Bizet,
Paenibacillus faecis sp. nov., isolated from human faeces,
International Journal of Systematic and Evolutionary Microbiology, 2015, 65 (12), pp.4621-4626. ⟨10.1099/ijsem.0.000622⟩.
2015
Gouge J, Rosario S, Romain F,Poitevin F, Béguin P, Delarue M,
Structural basis for a novel mechanism of DNA bridging and alignment in eukaryotic DSB DNA repair,
EMBO Journal, 2015, 34 (8), pp.1126-1142. ⟨10.15252/embj.201489643⟩.
2011
Nadia Benaroudj, Bertrand Raynal, Marika Miot, Miguel Ortiz-Lombardia,
Assembly and proteolytic processing of mycobacterial ClpP1 and ClpP2.,
BMC Biochemistry, 2011, 12 (1), pp.61. ⟨10.1186/1471-2091-12-61⟩.
2007
Henrik Ingvarsson, María J. Maté, Martin Högbom, Denis Portnoï, Nadia Benaroudj, Pedro Maria Alzari, Miguel Ortiz-Lombardía, Torsten Unge,
Insights into the inter-ring plasticity of caseinolytic proteases from the X-ray structure of Mycobacterium tuberculosis ClpP1.,
Acta crystallographica Section D : Structural biology [1993-..], 2007, 63 (Pt 2), pp.249-59. ⟨10.1107/S0907444906050530⟩.
2006
Olivera Francetic, Nienke Buddelmeijer, Shawn Lewenza, Carol A Kumamoto, Anthony P Pugsley,
Signal recognition particle-dependent inner membrane targeting of the PulG Pseudopilin component of a type II secretion system.,
Journal of Bacteriology, 2007, 189 (5), pp.1783-1793. ⟨10.1128/JB.01230-06⟩.