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  • Director of Center
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Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Scientific Data - 20 Apr 2024

Alexandra Moine-Franel, Fabien Mareuil, Michael Nilges, Constantin Bogdan Ciambur, Olivier Sperandio

Link to Pubmed [PMID] – 38643260

Link to HAL – pasteur-04599672

Link to DOI – 10.1038/s41597-024-03233-z

Scientific Data , 2024, 11 (1), pp.402. ⟨10.1038/s41597-024-03233-z⟩

This dataset represents a collection of pocket-centric structural data related to protein-protein interactions (PPIs) and PPI-related ligand binding sites. The dataset includes high-quality structural information on more than 23,000 pockets, 3,700 proteins on more than 500 organisms, and nearly 3500 ligands that can aid researchers in the fields of bioinformatics, structural biology, and drug discovery. It encompasses a diverse set of PPI complexes with more than 1,700 unique protein families including some with associated ligands, enabling detailed investigations into molecular interactions at the atomic level. This article introduces an indispensable resource designed to unlock the full potential of PPIs while pioneering a novel metric for pocket similarity for hypothesizing protein partners repurposing.