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Deputy Director of Center
Deputy Director of Department
Deputy Director of National Reference Center
Deputy Head of Facility
Director of Center
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Department: Genomes and Genetics

All Publications

Gomez-Raya-Vilanova MV, Teulière J, Medvedeva S, Dai Y, Corel E, Lopez P, Lapointe FJ, Bhattacharya D, Haraoui LP, Turc E, Monot M, Cvirkaite-Krupovic V, Bapteste E, Krupovic M, Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes, Nat Commun 2025 Jul; 16(1): 5697.

Ravneet Kaur Sidhu, Guillem Mas Fiol, Pierre Lê-Bury, Christian E Demeure, Emelyne Bougit, Rémi Beau, Charlotte Balière, Aurelia Kwasiborski, Valérie Caro, Jennifer Klunk, Daniel J Salkeld, Ann Carmichael, Nükhet Varlık, Debi Poinar, David J D Earn, Benjamin M Bolker, Jonathan Dushoff, G Brian Golding, Nicolas Rascovan, Olivier Dussurget, Edward C Holmes, Javier Pizarro-Cerdá, Hendrik N Poinar, Attenuation of virulence in Yersinia pestis across three plague pandemics, Science, 2025, 388 (6750), pp.eadt3880. ⟨10.1126/science.adt3880⟩.

Pereda J, Espinosa R, García-Solís B, Guerra-Galán T, Van-Den-Rym A, Kars ME, Mena R, Galán V, de Andrés-Martín A, Rodríguez-Gallego C, López-Lera A, Corvillo F, Pérez-Martínez A, López-Collazo E, Sánchez-Ramón S, Martínez-Barricarte R, Quintana-Murci L, Lorenzo-Salazar JM, Itan Y, Flores C, Pérez-de-Diego R, IEIVariantFilter: a bioinformatics tool to speed up genetic diagnosis of inborn errors of immunity patients., NAR Genom Bioinform 2025 Jun; 7(2): lqaf069.

Lopopolo M, Avanzi C, Duchene S,...[48 authors]..., Rascovan N, Pre-European contact leprosy in the Americas and its current persistence., Science 2025 May; (): eadu7144.

, Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems, Science, 388, 6747, (2025)..

Darracq B, Littner E, Brunie M, Bos J, Kaminski PA, Depardieu F, Slesak W, Debatisse K, Touchon M, Bernheim A, Bikard D, Le Roux F, Mazel D, Rocha EPC, Loot C, Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems., Science, 2025 May; 388(6747): eads0768.

Mazzuoli MV, van Raaphorst R, Martin LS, Bock FP, Thierry A, Marbouty M, Waclawiková B, Stinenbosch J, Koszul R, Veening JW, HU promotes higher order chromosome organization and influences DNA replication rates in Streptococcus pneumoniae., Nucleic Acids Res 2025 Apr; 53(8): .

Anaïs A, Yaxal PG, Amélie C, Philippe C, Nicolás R, An ancient Epstein-Barr virus genome recovered from a museum penis gourd from Papua., J Infect Dis 2025 Apr; (): .

Charles Bernard, Yannick Labreuche, Carine Diarra, Pauline Daszkowski, Karine Cahier, David Goudenège, Martin G Lamarche, Gregory B Whitfield, Manon Lang, Jeffrey Valencia, Justine Groseille, Damien Piel, Yan-Jiun Lee, Peter Weigele, Yves V Brun, Eduardo P. C. Rocha, Frédérique Le Roux, Adaptive genomic plasticity in large-genome, broad-host-range vibrio phages, The International Society of Microbiologial Ecology Journal, In press, pp.wraf063. ⟨10.1093/ismejo/wraf063⟩.

Léa Deltourbe, Jamie Sugrue, Elizabeth Maloney, Florian Dubois, Anthony Jaquaniello, Jacob Bergstedt, Etienne Patin, Lluis Quintana-Murci, Molly Ingersoll, Darragh Duffy, Steroid hormone levels vary with sex, aging, lifestyle, and genetics, Science Advances , 2025, 11 (13), pp.eadu6094. ⟨10.1126/sciadv.adu6094⟩.

Coluzzi C, Rocha EPC, The Spread of Antibiotic Resistance Is Driven by Plasmids Among the Fastest Evolving and of Broadest Host Range., Mol Biol Evol 2025 Mar; 42(3): .

Vendrell-Fernández S, Beamud B, Abou Haydar Y, Am de Sousa J, Burlaud-Gaillard J, Kornobis E, Raynal B, Vinh J, Bikard D, Ghigo JM, Incomplete lytic cycle of a widespread Bacteroides bacteriophage leads to the formation of defective viral particles., PLoS Biol 2025 Mar; 23(3): e3002787.

Girard F, Even A, Thierry A, Ruault M, Meneu L, Larrous P, Garnier M, Adiba S, Taddei A, Koszul R, Cournac A, Parasitic plasmids are anchored to inactive regions of eukaryotic chromosomes through a nucleosome signal., EMBO J 2025 Feb; (): .

Léa Meneu, Christophe Chapard, Jacques Serizay, Alex Westbrook, Etienne Routhier, Myriam Ruault, Manon Perrot, Alexandros Minakakis, Fabien Girard, Amaury Bignaud, Antoine Even, Géraldine Gourgues, Domenico Libri, Carole Lartigue, Aurèle Piazza, Agnès Thierry, Angela Taddei, Frédéric Beckouët, Julien Mozziconacci, Romain Koszul, Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus, Science, 2025, 387 (6734), pp.eadm9466. ⟨10.1126/science.adm9466⟩.

Mesquita Peixoto M, Soares-da-Silva F, Bonnet V, Zhou Y, Ronteix G, Santos RF, Mailhe MP, Nogueira G, Feng X, Pereira JP, Azzoni E, Anselmi G, de Bruijn MFTR, Perkins A, Baroud CN, Pinto-do-Ó P, Cumano A, Spatiotemporal dynamics of fetal liver hematopoietic niches., J Exp Med 2025 Feb; 222(2): .

Michella Khoury Damaa, Jacques Serizay, Rémi Balagué, Amélie-Rose Boudjema, Marion Faucourt, Nathalie Delgehyr, Kim Jee Goh, Hao Lu, Ee Kim Tan, Cameron T James, Catherine Faucon, Rana Mitri, Diana Carolin Bracht, Colin D Bingle, Norris Ray Dunn, Sebastian J Arnold, Laure-Emmanuelle Zaragosi, Pascal Barbry, Romain Koszul, Heymut Omran, Gabriel Gil-Gómez, Estelle Escudier, Marie Legendre, Sudipto Roy, Nathalie Spassky, Alice Meunier, Cyclin O controls entry into the cell-cycle variant required for multiciliated cell differentiation, Cell Reports, 2025, 44 (1), pp.115117. ⟨10.1016/j.celrep.2024.115117⟩.

Niault T, Talavera A, Le Cam E, Baconnais S, Skovgaard O, Fournes F, Wagner L, Tamman H, Thompson A, Echemendia-Blanco D, Guzzi N, Garcia-Pino A, Mazel D, Val ME, Dynamic transitions of initiator binding coordinate the replication of the two chromosomes in Vibrio cholerae., Nat Commun 2025 Jan; 16(1): 485.

Fruchard L, Babosan A, Carvalho A, Lang M, Li B, Duchateau M, Giai Gianetto Q, Matondo M, Bonhomme F, Hatin I, Arbes H, Fabret C, Corler E, Sanchez G, Marchand V, Motorin Y, Namy O, de Crécy-Lagard V, Mazel D, Baharoglu Z, Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification., Elife 2025 Jan; 13(): .

Vaysset H, Meers C, Cury J, Bernheim A, Sternberg SH, Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons., Nat Microbiol 2025 Jan; (): .

Serizay J, Khoury Damaa M, Boudjema AR, Balagué R, Faucourt M, Delgehyr N, Noûs C, Zaragosi LE, Barbry P, Spassky N, Koszul R, Meunier A, Cyclin switch tailors a cell cycle variant to orchestrate multiciliogenesis., Cell Rep 2024 Dec; (): 115103.

Patin E, Quintana-Murci L, Tracing the Evolution of Human Immunity Through Ancient DNA., Annu Rev Immunol 2024 Dec; (): .

Vorobevskaia E, Loot C, Mazel D, Schlierf M, The recombination efficiency of the bacterial integron depends on the mechanical stability of the synaptic complex., Sci Adv 2024 Dec; 10(50): eadp8756.

Arribas YA, Baudon B, Rotival M, Suárez G, Bonté PE, Casas V, Roubert A, Klein P, Bonnin E, Mchich B, Legoix P, Baulande S, Sadacca B, Diharce J, Waterfall JJ, Etchebest C, Carrascal M, Goudot C, Quintana-Murci L, Burbage M, Merlotti A, Amigorena S, Transposable element exonization generates a reservoir of evolving and functional protein isoforms., Cell 2024 Dec; (): .

Tesson F, Huiting E, Wei L, Ren J, Johnson M, Planel R, Cury J, Feng Y, Bondy-Denomy J, Bernheim A, Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements., Nucleic Acids Res 2024 Dec; (): .

Hafner L, Gadin E, Huang L, Frouin A, Laporte F, Gaultier C, Vieira A, Maudet C, Varet H, Moura A, Bracq-Dieye H, Tessaud-Rita N, Maury M, Dazas M, Legendre R, Gastineau P, Tsai YH, Coppée JY, Charlier C, Patin E, Chikhi R, Rocha EPC, Leclercq A, Disson O, Aschard H, Lecuit M, Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes., Nat Microbiol 2024 Dec; 9(12): 3345-3361.

von Stemann JH, Dubois F, Saint-André V, Bondet V, Posseme C, Charbit B, Quintana-Murci L, Hansen MB, Ostrowski SR, Duffy D, Cytokine Autoantibodies Alter Gene Expression Profiles of Healthy Donors., Eur J Immunol 2025 Jan; 55(1): e202451211.

Espinosa E, Challita J, Desfontaines JM, Possoz C, Val ME, Mazel D, Marbouty M, Koszul R, Galli E, Barre FX, MatP local enrichment delays segregation independently of tetramer formation and septal anchoring in Vibrio cholerae., Nat Commun 2024 Nov; 15(1): 9893.

Dorison L, Béchon N, Martin-Gallausiaux C, Chamorro-Rodriguez S, Vitrenko Y, Ouazahrou R, Villa R, Deschamps J, Briandet R, Gribaldo S, Ghigo J-M, Beloin C, Identification of Veillonella parvula and Streptococcus gordonii adhesins mediating co-aggregation and its impact on physiology and mixed biofilm structure., mBio 2024 Nov; (): e0217124.

Blanco P, Trigo da Roza F, Toribio-Celestino L, García-Pastor L, Caselli N, Morón Á, Ojeda F, Darracq B, Vergara E, Amaro F, San Millán Á, Skovgaard O, Mazel D, Loot C, Escudero JA, Chromosomal integrons are genetically and functionally isolated units of genomes., Nucleic Acids Res 2024 Nov; 52(20): 12565-12581.

Manuel Ares-Arroyo, Amandine Nucci, Eduardo Rocha, Expanding the diversity of origin of transfer-containing sequences in mobilizable plasmids, Nature Microbiology, In press, ⟨10.1038/s41564-024-01844-1⟩.

Gaborieau B, Vaysset H, Tesson F, Charachon I, Dib N, Bernier J, Dequidt T, Georjon H, Clermont O, Hersen P, Debarbieux L, Ricard JD, Denamur E, Bernheim A, Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information., Nat Microbiol 2024 Nov; 9(11): 2847-2861.

Ciccarella M, Laurent R, Szpiech ZA, Patin E, Dessarps-Freichey F, Utgé J, Lémée L, Semo A, Rocha J, Verdu P, Nested admixture during and after the Trans-Atlantic Slave Trade on the island of São Tomé., bioRxiv 2024 Oct; (): .

Marta Ciccarella, Romain Laurent, Zachary Szpiech, Etienne Patin, Françoise Dessarps-Freichey, José Utgé, Laure Lémée, Armando Semo, Jorge Rocha, Paul Verdu, Nested admixture during and after the Trans-Atlantic Slave Trade on the island of São Tomé, 2025.

Debatisse K, Niault T, Peeters S, Maire A, Toktas B, Darracq B, Baharoglu Z, Bikard D, Mazel D, Loot C, Fine-tuning of a CRISPRi screen in the seventh pandemic Vibrio cholerae., BMC Genomics 2024 Oct; 25(1): 985.

Louis Dorison L, Béchon N, Martin-Gallausiaux C, Chamorro Rodriguez S, Vitrenko dI Ouazahrou RI Villa R, Deschamps J, Briandet R, Gribaldo SI S, Ghigo JM, Beloin C, Identification of V. parvula and S. gordonii adhesins mediating co-agregation and its impact on physiology and mixedbiofilm structure., mBio. 2024, in press.

Maroofian R, Pagnamenta AT, Navabazam A, Schwessinger R, Roberts HE, Lopopolo M, Dehghani M, Vahidi Mehrjardi MY, Haerian A, Soltanianzadeh M, Noori Kooshki MH, Knight SJL, Miller KA, McGowan SJ, Chatron N, Timberlake AT, Melo US, Mundlos S, Buck D, Twigg SRF, Taylor JC, Wilkie AOM, Calpena E, Familial severe skeletal Class II malocclusion with gingival hyperplasia caused by a complex structural rearrangement at the KCNJ2-KCNJ16 locus., HGG Adv 2024 Oct; 5(4): 100352.

Mazzamurro F, Chirakadavil JB, Durieux I, Poiré L, Plantade J, Ginevra C, Jarraud S, Wilharm G, Charpentier X, P C Rocha E, Intragenomic conflicts with plasmids and chromosomal mobile genetic elements drive the evolution of natural transformation within species., PLoS Biol 2024 Oct; 22(10): e3002814.

Anjou C, Royer M, Bertrand É, Bredon M, Le Bris J, Salgueiro IA, Caulat LC, Dupuy B, Barbut F, Morvan C, Rolhion N, Martin-Verstraete I, Adaptation mechanisms of Clostridioides difficile to auranofin and its impact on human gut microbiota., NPJ Biofilms Microbiomes 2024 Sep; 10(1): 86.

Dumont A, Mendiboure N, Savocco J, Anani L, Moreau P, Thierry A, Modolo L, Jost D, Piazza A, Mechanism of homology search expansion during recombinational DNA break repair in Saccharomyces cerevisiae., Mol Cell 2024 Sep; 84(17): 3237-3253.e6.

Zeitler L, Goldar A, Denby Wilkes C, Soutourina J, The next-generation sequencing-chess problem., NAR Genom Bioinform 2024 Sep; 6(4): lqae144.

Laval G, Patin E, Quintana-Murci L, Kerner G, Deep estimation of the intensity and timing of natural selection from ancient genomes., Mol Ecol Resour 2024 Aug; (): e14015.

Meeks GL, Scelza B, Asnake HM, Prall S, Patin E, Froment A, Fagny M, Quintana-Murci L, Henn BM, Gopalan S, Common DNA sequence variation influences epigenetic aging in African populations., bioRxiv 2024 Aug; (): .

Cury J, Haudiquet M, Hernandez Trejo V, Mordret E, Hanouna A, Rotival M, Tesson F, Bonhomme D, Ofir G, Quintana-Murci L, Benaroch P, Poirier EZ, Bernheim A, Conservation of antiviral systems across domains of life reveals immune genes in humans., Cell Host Microbe 2024 Aug; (): .

Tesson F, Huiting E, Wei L, Ren J, Johnson MC, Planel R, Cury J, Feng Y, Bondy-Denomy J, Bernheim A, Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements., bioRxiv 2024 Aug; (): .

Burman N, Belukhina S, Depardieu F, Wilkinson RA, Skutel M, Santiago-Frangos A, Graham AB, Livenskyi A, Chechenina A, Morozova N, Zahl T, Henriques WS, Buyukyoruk M, Rouillon C, Saudemont B, Shyrokova L, Kurata T, Hauryliuk V, Severinov K, Groseille J, Thierry A, Koszul R, Tesson F, Bernheim A, Bikard D, Wiedenheft B, Isaev A, A virally-encoded tRNA neutralizes the PARIS antiviral defence system., Nature 2024 Aug; (): .

Schiffer PH, Natsidis P, Leite DJ, Robertson HE, Lapraz F, Marlétaz F, Fromm B, Baudry L, Simpson F, Høye E, Zakrzewski AC, Kapli P, Hoff KJ, Müller S, Marbouty M, Marlow H, Copley RR, Koszul R, Sarkies P, Telford MJ, Insights into early animal evolution from the genome of the xenacoelomorph worm Xenoturbella bocki., Elife 2024 Aug; 13(): .

Serizay J, Koszul R, Epigenomics coverage data extraction and aggregation in R with tidyCoverage., Bioinformatics 2024 Aug; 40(8): .

Bertrand A, Sugrue J, Lou T, Bourke NM, Quintana-Murci L, Saint-André V, O'Farrelly C, Duffy D, Impact of socioeconomic status on healthy immune responses in humans., Immunol Cell Biol 2024 Aug; 102(7): 618-629.

Lena Le Quellec , Andrey Aristov , Salomé Gutiérrez Ramos, Gabriel Amselem, Julia Bos, Zeynep Baharoglu, Didier Mazel, Charles N. Baroud, Measuring single-cell susceptibility to antibiotics within monoclonal bacterial populations, https://doi.org/10.1371/journal.pone.0303630.

Planchais C, Fernández I, Chalopin B, Bruel T, Rosenbaum P, Beretta M, Dimitrov JD, Conquet L, Donati F, Prot M, Porrot F, Planas D, Staropoli I, Guivel-Benhassine F, Baquero E, van der Werf S, Haouz A, Simon-Lorière E, Montagutelli X, Maillère B, Rey FA, Guardado-Calvo P, Nozach H, Schwartz O, Mouquet H, Broad sarbecovirus neutralization by combined memory B cell antibodies to ancestral SARS-CoV-2., iScience 2024 Jul; 27(7): 110354.

Marchal A, Cirulli ET, Neveux I, Bellos E, Thwaites RS, Schiabor Barrett KM, Zhang Y, Nemes-Bokun I, Kalinova M, Catchpole A, Tangye SG, Spaan AN, Lack JB, Ghosn J, Burdet C, Gorochov G, Tubach F, Hausfater P, , , , , , , , , , Dalgard CL, Zhang SY, Zhang Q, Chiu C, Fellay J, Grzymski JJ, Sancho-Shimizu V, Abel L, Casanova JL, Cobat A, Bolze A, Lack of association between classical HLA genes and asymptomatic SARS-CoV-2 infection., HGG Adv 2024 Jul; 5(3): 100300.

Shomar H, Georjon H, Feng Y, Olympio B, Guillaume M, Tesson F, Cury J, Wu F, Bernheim A, Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold., Nat Ecol Evol 2024 Jul; (): .

Bernheim A, Cury J, Poirier EZ, The immune modules conserved across the tree of life: Towards a definition of ancestral immunity., PLoS Biol 2024 Jul; 22(7): e3002717.

Vaysset H, Meers C, Cury J, Bernheim A, Sternberg SH, Evolutionary origins of archaeal and eukaryotic RNA-guided RNA modification in bacterial IS110 transposons., bioRxiv 2024 Jun; (): .

Fert I, Douguet L, Vesin B, Moncoq F, Noirat A, Authié P, Ciret S, Le Chevalier F, Blanc C, Vitrenko Y, Charneau P, Majlessi L, Anna F, T-cell immunity induced and reshaped by an anti-HPV immuno-oncotherapeutic lentiviral vector., NPJ Vaccines 2024 Jun; 9(1): 102.

Fruchard Louna, Babosan Anamaria, Carvalho Andre, Lang Manon, Li Blaise, Duchateau Magalie, Giai-Gianetto Quentin, Matondo Mariette, Bonhomme Frédéric, Hatin Isabelle, Arbes Hugo, Fabret Céline, Sanchez Guillaume, Marchand Virginie, Motorin Yuri, Namy Olivier, de Crécy-Lagard Valérie, Mazel Didier, Baharoglu Zeynep, Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated to queuosine tRNA modification, Elife.

Rémi Planel, Victoire Baillet, Rachel Torchet, Vincent Guillemot, Pascal Campagne, Jean Jaubert, Marion Rincel, Christian A. J. Vosshenrich, Xavier Montagutelli, Caroline Manet, ccqtl-db, 2024, ⟨swh:1:dir:b3362746041f9acd17180af8a77dc963f9ec5443;origin=https://gitlab.pasteur.fr/cc-qtl/cc-qtl-db;visit=swh:1:snp:ee61a4e0ae9068c1d9dd665bd485ffc6a5287dfd;anchor=swh:1:rev:d796db76a93e9c192563777fa07656da3db747a8⟩.

Boetto C, Frouin A, Henches L, Auvergne A, Suzuki Y, Patin E, Bredon M, Chiu A, Consortium MI, Sankararaman S, Zaitlen N, Kennedy SP, Quintana-Murci L, Duffy D, Sokol H, Aschard H, MANOCCA: a robust and computationally efficient test of covariance in high-dimension multivariate omics data., Brief Bioinform 2024 May; 25(4): .

Mistretta M, Cimino M, Campagne P, Volant S, Kornobis E, Hebert O, Rochais C, Dallemagne P, Lecoutey C, Tisnerat C, Lepailleur A, Ayotte Y, LaPlante SR, Gangneux N, Záhorszká M, Korduláková J, Vichier-Guerre S, Bonhomme F, Pokorny L, Albert M, Tinevez JY, Manina G, Dynamic microfluidic single-cell screening identifies pheno-tuning compounds to potentiate tuberculosis therapy., Nat Commun 2024 May; 15(1): 4175.

Benz F, Camara-Wilpert S, Russel J, Wandera KG, Čepaitė R, Ares-Arroyo M, Gomes-Filho JV, Englert F, Kuehn JA, Gloor S, Mestre MR, Cuénod A, Aguilà-Sans M, Maccario L, Egli A, Randau L, Pausch P, Rocha EPC, Beisel CL, Madsen JS, Bikard D, Hall AR, Sørensen SJ, Pinilla-Redondo R, Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans., Cell Host Microbe 2024 May; (): .

Bignaud A, Koszul R, [Transcription: The backbone of bacterial chromosome architecture]., Med Sci (Paris) 2024 May; 40(5): 412-413.

Gnaien M, Maufrais C, Rebai Y, Kallel A, Ma L, Hamouda S, Khalsi F, Meftah K, Smaoui H, Khemiri M, Hadj Fredj S, Bachellier-Bassi S, Najjar I, Messaoud T, Boussetta K, Kallel K, Mardassi H, d'Enfert C, Bougnoux ME, Znaidi S, A gain-of-function mutation in zinc cluster transcription factor Rob1 Drives Candida albicans adaptive growth in the cystic fibrosis lung environment., PLoS Pathog 2024 Apr; 20(4): e1012154.

Brunet J, Choucha Z, Gransagne M, Tabbal H, Ku M-W, Buchrieser J, Fernandes P, Batalie D, Lopez J, Ma L, Dufour E, Simon E, Hardy D, Petres S, Guinet F, Strick-Marchand H, Monot M, Charneau P, Majlessi L, Duprex WP, Gerke C, Martin A, Escriou N, A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: candidate selection in a preclinical murine model., J Virol 2024 Apr; (): e0169323.

Richard E, Darracq B, Littner E, Millot GA, Conte V, Cokelaer T, Engelstädter J, Rocha EPC, Mazel D, Loot C, Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons., PLoS Genet 2024 Apr; 20(4): e1011231.

Forest T, Achaz G, Marbouty M, Bignaud A, Thierry A, Koszul R, Milhes M, Lledo J, Pons JM, Fuchs J, Chromosome-level genome assembly of the European green woodpecker Picus viridis., G3 (Bethesda) 2024 Mar; (): .

Lopes A-A, Vendrell-Fernández S, Deschamps J, Georgeault S, Cokelaer T, Briandet R, Ghigo J-M, Bile-induced biofilm formation in Bacteroides thetaiotaomicron requires magnesium efflux by an RND pump., mBio 2024 May 8;15(5): e0348823.

Bastié N, Chapard C, Cournac A, Nejmi S, Mboumba H, Gadal O, Thierry A, Beckouët F, Koszul R, Sister chromatid cohesion halts DNA loop expansion., Mol Cell 2024 Mar; 84(6): 1139-1148.e5.

Legrand S, Saifudeen A, Bordelet H, Vernerey J, Guille A, Bignaud A, Thierry A, Acquaviva L, Gaudin M, Sanchez A, Johnson D, Friedrich A, Schacherer J, Neale MJ, Borde V, Koszul R, Llorente B, Absence of chromosome axis protein recruitment prevents meiotic recombination chromosome-wide in the budding yeast Lachancea kluyveri., Proc Natl Acad Sci U S A 2024 Mar; 121(12): e2312820121.

d'Humières C, Delavy M, Alla L, Ichou F, Gauliard E, Ghozlane A, Levenez F, Galleron N, Quinquis B, Pons N, Mullaert J, Bridier-Nahmias A, Condamine B, Touchon M, Rainteau D, Lamazière A, Lesnik P, Ponnaiah M, Lhomme M, Sertour N, Devente S, Docquier JD, Bougnoux ME, Tenaillon O, Magnan M, Ruppé E, Grall N, Duval X, Ehrlich D, Mentré F, Denamur E, Rocha EPC, Le Chatelier E, Burdet C, Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases., Microbiome 2024 Mar; 12(1): 50.

Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Rémy A Bonnin, Pilar Domingo-Calap, Eduardo P C Rocha, Olaya Rendueles, Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency, Nature Communications, 2024, 15 (1), pp.2032. ⟨10.1038/s41467-024-46147-5⟩.

Jain S, Belkadi H, Michaut A, Sart S, Gros J, Genet M, Baroud CN, Using a micro-device with a deformable ceiling to probe stiffness heterogeneities within 3D cell aggregates., Biofabrication 2024 Mar; (): .

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Garcia-Luis J, Lazar-Stefanita L, Gutierrez-Escribano P, Thierry A, Cournac A, García A, González S, Sánchez M, Jarmuz A, Montoya A, Dore M, Kramer H, Karimi MM, Antequera F, Koszul R, Aragon L, FACT mediates cohesin function on chromatin, Nat. Struct. Mol. Biol. 2019 Oct;26(10):970-979.

Scepanovic P, Hodel F, Mondot S, Partula V, Byrd A, Hammer C, Alanio C, Bergstedt J, Patin E, Touvier M, Lantz O, Albert ML, Duffy D, Quintana-Murci L, Fellay J, A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals., Microbiome 2019 Sep; 7(1): 130.

Rotival M, , Characterising the genetic basis of immune response variation to identify causal mechanisms underlying disease susceptibility., HLA 2019 09; 94(3): 275-284.

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Fabienne Levi-Acobas, Adam Katolik, Pascal Röthlisberger, Thomas Cokelaer, Ivo Sarac, Masad J. Damha, Christian J. Leumann and Marcel Hollenstein*, Compatibility of 5-ethynyl-2’F-ANA UTP with in vitro selection for the generation of base-modified, nuclease resistant aptamers, Org. Biomol. Chem. 2019, 17, 8083 - 8087.

Tarantola A, Horwood PF, Goarant C, Bertrand S, Merilles OEA, Pedron T, Klement-Frutos E, Sansonetti P, Quintana-Murci L, Richard V, Counting Oceanians of Non-European, Non-Asian Descent (ONENA) in the South Pacific to Make Them Count in Global Health, Trop Med Infect Dis 2019 Aug;4(3).

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Harrison GF, Sanz J, Boulais J, Mina MJ, Grenier JC, Leng Y, Dumaine A, Yotova V, Bergey CM, Nsobya SL, Elledge SJ, Schurr E, Quintana-Murci L, Perry GH, Barreiro LB, Natural selection contributed to immunological differences between hunter-gatherers and agriculturalists, Nat Ecol Evol 2019 Aug;3(8):1253-1264.

Denise R, Abby SS, Rocha EPC, Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility, PLoS Biol. 2019 Jul;17(7):e3000390.

Oya E, Durand-Dubief M, Cohen A, Maksimov V, Schurra C, Nakayama JI, Weisman R, Arcangioli B, Ekwall K, Leo1 is essential for the dynamic regulation of heterochromatin and gene expression during cellular quiescence, Epigenetics Chromatin 2019 07;12(1):45.

Buchrieser J, Degrelle SA, Couderc T, Nevers Q, Disson O, Manet C, Donahue DA, Porrot F, Hillion KH, Perthame E, Arroyo MV, Souquere S, Ruigrok K, Dupressoir A, Heidmann T, Montagutelli X, Fournier T, Lecuit M, Schwartz O, , IFITM proteins inhibit placental syncytiotrophoblast formation and promote fetal demise., Science 2019 Jul; 365(6449): 176-180.

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Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A, Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype., PLoS Pathog 2019 Jul; 15(7): e1007945.

Brodin P, Duffy D, Quintana-Murci L, A Call for Blood-In Human Immunology, Immunity 2019 Jun;50(6):1335-1336.

Zhang E, Khanna V, Dacheux E, Namane A, Doyen A, Gomard M, Turcotte B, Jacquier A, Fromont-Racine M, A specialised SKI complex assists the cytoplasmic RNA exosome in the absence of direct association with ribosomes, EMBO J. 2019 07;38(14):e100640.

Galli E, Ferat JL, Desfontaines JM, Val ME, Skovgaard O, Barre FX, Possoz C, Replication termination without a replication fork trap., Sci Rep 2019 Jun; 9(1): 8315.

Silvert M, Quintana-Murci L, Rotival M, Impact and Evolutionary Determinants of Neanderthal Introgression on Transcriptional and Post-Transcriptional Regulation, Am. J. Hum. Genet. 2019 Jun;104(6):1241-1250.

Guérin TM, Béneut C, Barinova N, López V, Lazar-Stefanita L, Deshayes A, Thierry A, Koszul R, Dubrana K, Marcand S, Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis, Mol. Cell 2019 07;75(1):131-144.e3.

Piazza A, Heyer WD, Moving forward one step back at a time: reversibility during homologous recombination, Curr. Genet. 2019 May;.

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Van den Bossche A, Varet H, Sury A, Sismeiro O, Legendre R, Coppee JY, Mathys V, Ceyssens PJ, Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid, Tuberculosis (Edinb) 2019 Jul;117:18-23.

Bernheim A, Bikard D, Touchon M, Rocha EPC, A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria, Philos. Trans. R. Soc. Lond., B, Biol. Sci. 2019 May;374(1772):20180088.

Dubois T, Tremblay YDN, Hamiot A, Martin-Verstraete I, Deschamps J, Monot M, Briandet R, Dupuy B, , A microbiota-generated bile salt induces biofilm formation in Clostridium difficile., NPJ Biofilms Microbiomes 2019 05; 5(1): 14.

Kerner G, Ramirez-Alejo N, Seeleuthner Y, Yang R, Ogishi M, Cobat A, Patin E, Quintana-Murci L, Boisson-Dupuis S, Casanova JL, Abel L, Homozygosity for P1104A underlies tuberculosis in about 1% of patients in a cohort of European ancestry, Proc. Natl. Acad. Sci. U.S.A. 2019 May;.

Partula V, Mondot S, Torres MJ, Kesse-Guyot E, Deschasaux M, Assmann K, Latino-Martel P, Buscail C, Julia C, Galan P, Hercberg S, Rouilly V, Thomas S, Quintana-Murci L, Albert ML, Duffy D, Lantz O, Touvier M, , , Associations between usual diet and gut microbiota composition: results from the Milieu Intérieur cross-sectional study., Am J Clin Nutr 2019 May; 109(5): 1472-1483.

Dávila Felipe M, Domelevo Entfellner JB, Lemoine F, Truszkowski J, Gascuel O, , Distribution and asymptotic behavior of the phylogenetic transfer distance., J Math Biol 2019 07; 79(2): 485-508.

Barizien A, Suryateja Jammalamadaka MS, Amselem G, Baroud CN, , Growing from a few cells: combined effects of initial stochasticity and cell-to-cell variability., J R Soc Interface 2019 04; 16(153): 20180935.

Rotival M, Quach H, Quintana-Murci L, Defining the genetic and evolutionary architecture of alternative splicing in response to infection, Nat Commun 2019 04;10(1):1671.

Mary L, Zvénigorosky V, Kovalev A, Gonzalez A, Fausser JL, Jagorel F, Kilunovskaya M, Semenov V, Crubézy E, Ludes B, Keyser C, Genetic kinship and admixture in Iron Age Scytho-Siberians., Hum Genet 2019 Apr; 138(4): 411-423.

Nemat-Gorgani N, Guethlein LA, Henn BM, Norberg SJ, Chiaroni J, Sikora M, Quintana-Murci L, Mountain JL, Norman PJ, Parham P, Diversity of Killer Cell Ig-Like Receptor, HLA Class I, and Their Interactions in Seven Populations of Sub-Saharan Africans, J. Immunol. 2019 Mar;.

Tesina P, Heckel E, Cheng J, Fromont-Racine M, Buschauer R, Kater L, Beatrix B, Berninghausen O, Jacquier A, Becker T, Beckmann R, Structure of the 80S ribosome-Xrn1 nuclease complex, Nat. Struct. Mol. Biol. 2019 04;26(4):275-280.

Quintana-Murci L, Human Immunology through the Lens of Evolutionary Genetics, Cell 2019 Mar;177(1):184-199.

Laval G, Peyrégne S, Zidane N, Harmant C, Renaud F, Patin E, Prugnolle F, Quintana-Murci L, Recent Adaptive Acquisition by African Rainforest Hunter-Gatherers of the Late Pleistocene Sickle-Cell Mutation Suggests Past Differences in Malaria Exposure, Am. J. Hum. Genet. 2019 Mar;104(3):553-561.

Mukhortava A, Pöge M, Grieb MS, Nivina A, Loot C, Mazel D, Schlierf M, Structural heterogeneity of attC integron recombination sites revealed by optical tweezers., Nucleic Acids Res 2019 Feb; 47(4): 1861-1870.

Piazza A, Shah SS, Wright WD, Gore SK, Koszul R, Heyer WD, Dynamic Processing of Displacement Loops during Recombinational DNA Repair, Mol. Cell 2019 03;73(6):1255-1266.e4.

Bradley P, den Bakker HC, Rocha EPC, McVean G, Iqbal Z, Ultrafast search of all deposited bacterial and viral genomic data, Nat. Biotechnol. 2019 Feb;37(2):152-159.

Tan ALM, Langley SR, Tan CF, Chai JF, Khoo CM, Leow MK, Khoo EYH, Moreno-Moral A, Pravenec M, Rotival M, Sadananthan SA, Velan SS, Venkataraman K, Chong YS, Lee YS, Sim X, Stunkel W, Liu MH, Tai ES, Petretto E, , Ethnicity-Specific Skeletal Muscle Transcriptional Signatures and Their Relevance to Insulin Resistance in Singapore., J. Clin. Endocrinol. Metab. 2019 02; 104(2): 465-486.

Lopez-Igual R., Bernal-Bayard J., Rodriguez-Paton A., Ghigo J.-M., and Mazel D., Engineered toxin-intein antimicrobials can selectively target and kill antibiotic-resistant bacteria in mixed populations, Nat Biotechnol. 2019 Jul;37(7):755-760. doi: 10.1038/s41587-019-0105-3. Epub 2019 Apr 15..

Rascovan N, Sjögren KG, Kristiansen K, Nielsen R, Willerslev E, Desnues C, Rasmussen S, , Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline., Cell 2019 01; 176(1-2): 295-305.e10.

Sart, S., Tomasi,R.F.-X., Barizien, A., Amselem, G., Cumano, A. & Baroud, C.N., Mapping structure and biological functions within mesenchymal bodies using microfluidics, bioRxiv 514158; doi: https://doi.org/10.1101/514158.

Weill FX, Domman D, Njamkepo E, Almesbahi AA, Naji M, Nasher SS, Rakesh A, Assiri AM, Sharma NC, Kariuki S, Pourshafie MR, Rauzier J, Abubakar A, Carter JY, Wamala JF, Seguin C, Bouchier C, Malliavin T, Bakhshi B, Abulmaali HHN, Kumar D, Njoroge SM, Malik MR, Kiiru J, Luquero FJ, Azman AS, Ramamurthy T, Thomson NR, Quilici ML, , Genomic insights into the 2016-2017 cholera epidemic in Yemen., Nature 2019 01; 565(7738): 230-233.

Berthelot C, Clarke J, Desvignes T, William Detrich H, Flicek P, Peck LS, Peters M, Postlethwait JH, Clark MS, , Adaptation of Proteins to the Cold in Antarctic Fish: A Role for Methionine?, Genome Biol Evol 2019 01; 11(1): 220-231.

Maffucci P, Bigio B, Rapaport F, Cobat A, Borghesi A, Lopez M, Patin E, Bolze A, Shang L, Bendavid M, Scott EM, Stenson PD, Cunningham-Rundles C, Cooper DN, Gleeson JG, Fellay J, Quintana-Murci L, Casanova JL, Abel L, Boisson B, Itan Y, Blacklisting variants common in private cohorts but not in public databases optimizes human exome analysis, Proc. Natl. Acad. Sci. U.S.A. 2019 Jan;116(3):950-959.

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Boisson-Dupuis S, Ramirez-Alejo N, Li Z, Patin E, Rao G, Kerner G, Lim CK, Krementsov DN, Hernandez N, Ma CS, Zhang Q, Markle J, Martinez-Barricarte R, Payne K, Fisch R, Deswarte C, Halpern J, Bouaziz M, Mulwa J, Sivanesan D, Lazarov T, Naves R, Garcia P, Itan Y, Boisson B, Checchi A, Jabot-Hanin F, Cobat A, Guennoun A, Jackson CC, Pekcan S, Caliskaner Z, Inostroza J, Costa-Carvalho BT, de Albuquerque JAT, Garcia-Ortiz H, Orozco L, Ozcelik T, Abid A, Rhorfi IA, Souhi H, Amrani HN, Zegmout A, Geissmann F, Michnick SW, Muller-Fleckenstein I, Fleckenstein B, Puel A, Ciancanelli MJ, Marr N, Abolhassani H, Balcells ME, Condino-Neto A, Strickler A, Abarca K, Teuscher C, Ochs HD, Reisli I, Sayar EH, El-Baghdadi J, Bustamante J, Hammarström L, Tangye SG, Pellegrini S, Quintana-Murci L, Abel L, Casanova JL, Tuberculosis and impaired IL-23-dependent IFN-γ immunity in humans homozygous for a common missense variant, Sci Immunol 2018 Dec;3(30).

Rendueles O, de Sousa JAM, Bernheim A, Touchon M, Rocha EPC, Genetic exchanges are more frequent in bacteria encoding capsules, PLoS Genet. 2018 12;14(12):e1007862.

Husquin LT, Rotival M, Fagny M, Quach H, Zidane N, McEwen LM, MacIsaac JL, Kobor MS, Aschard H, Patin E, Quintana-Murci L, , Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation., Genome Biol 2018 12; 19(1): 222.

Phan TV, Morris RJ, Lam HT, Hulamm P, Black ME, Bos J, Austin RH, , Emergence of Escherichia coli critically buckled motile helices under stress., Proc Natl Acad Sci U S A 2018 12; 115(51): 12979-12984.

Duval M, Dar D, Carvalho F, Rocha EPC, Sorek R, Cossart P, HflXr, a homolog of a ribosome-splitting factor, mediates antibiotic resistance, Proc. Natl. Acad. Sci. U.S.A. 2018 12;115(52):13359-13364.

Etienne Patin, Lluis Quintana-Murci, The demographic and adaptive history of central African hunter-gatherers and farmers, Current Opinion in Genetics and Development, 2018, 53, pp.90-97. ⟨10.1016/j.gde.2018.07.008⟩.

Brenna Henn, Lluis Quintana-Murci, Editorial overview: The history, geography and adaptation of human genes: A tribute to L. Luca Cavalli-Sforza, Current Opinion in Genetics and Development, 2018, 53, pp.iii-v. ⟨10.1016/j.gde.2018.11.004⟩.

Piazza A, Heyer WD, Homologous Recombination and the Formation of Complex Genomic Rearrangements, Trends Cell Biol. 2019 Feb;29(2):135-149.

Bergey CM, Lopez M, Harrison GF, Patin E, Cohen JA, Quintana-Murci L, Barreiro LB, Perry GH, Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers, Proc. Natl. Acad. Sci. U.S.A. 2018 Nov;115(48):E11256-E11263.

de Lemos Martins F, Fournes F, Mazzuoli MV, Mazel D, Val ME, Vibrio cholerae chromosome 2 copy number is controlled by the methylation-independent binding of its monomeric initiator to the chromosome 1 crtS site., Nucleic Acids Res 2018 Nov; 46(19): 10145-10156.

de Lemos Martins F, Fournes F, Mazzuoli MV, Mazel D, Val ME, , Vibrio cholerae chromosome 2 copy number is controlled by the methylation-independent binding of its monomeric initiator to the chromosome 1 crtS site., Nucleic Acids Res 2018 11; 46(19): 10145-10156.

Fourati et al, A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection., Nat Commun. 2018 Oct 24;9(1):4418.

Sacerdot C, Louis A, Bon C, Berthelot C, Roest Crollius H, , Chromosome evolution at the origin of the ancestral vertebrate genome., Genome Biol 2018 10; 19(1): 166.

McEwen LM, Jones MJ, Lin DTS, Edgar RD, Husquin LT, MacIsaac JL, Ramadori KE, Morin AM, Rider CF, Carlsten C, Quintana-Murci L, Horvath S, Kobor MS, Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array, Clin Epigenetics 2018 Oct;10(1):123.

Moreau P, Cournac A, Palumbo GA, Marbouty M, Mortaza S, Thierry A, Cairo S, Lavigne M, Koszul R, Neuveut C, , Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin., Nat Commun 2018 Oct; 9(1): 4268.

Freiherr von Boeselager R, Pfeifer E, Frunzke J, Cytometry meets next-generation sequencing – RNA-Seq of sorted subpopulations reveals regional replication and iron-triggered prophage induction in Corynebacterium glutamicum, Sci Rep 2018 Oct;8(1):14856.

Baudement MO, Cournac A, Court F, Seveno M, Parrinello H, Reynes C, Sabatier R, Bouschet T, Yi Z, Sallis S, Tancelin M, Rebouissou C, Cathala G, Lesne A, Mozziconacci J, Journot L, Forné T, High-salt-recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies, Genome Res. 2018 Oct;.

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Lucie Chevallier, Charlène Blanchet, Jean Jaubert, Emilia Pachulec, Christian E. Demeure, Elisabeth Carniel, Jean-Jacques Panthier, Xavier Montagutelli, Resistance to plague of Mus spretus SEG/Pas mice requires the combined action of at least four genetic factors, Genes and Immunity, 2013, 14 (1), pp.35-41. ⟨10.1038/gene.2012.50⟩.

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Mazel D, Mobashery S, Antibiotics as physiological stress inducers and bacterial response to the challenge, Curr. Opin. Microbiol. 2012 Oct;15(5):553-4.

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Abby SS, Rocha EP, The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems, PLoS Genet. 2012 Sep;8(9):e1002983.

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Clermont O, Gordon DM, Brisse S, Walk ST, Denamur E, Characterization of the cryptic Escherichia lineages: rapid identification and prevalence, Environ. Microbiol. 2011 Sep;13(9):2468-77.

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Chenal-Francisque V, Lopez J, Cantinelli T, Caro V, Tran C, Leclercq A, Lecuit M, Brisse S, , Worldwide distribution of major clones of Listeria monocytogenes., Emerg Infect Dis 2011 Jun; 17(6): 1110-2.

Fevre C, Passet V, Deletoile A, Barbe V, Frangeul L, Almeida AS, Sansonetti P, Tournebize R, Brisse S, PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma, PLoS Negl Trop Dis 2011 May;5(5):e1052.

Leclercq A, Chenal-Francisque V, Dieye H, Cantinelli T, Drali R, Brisse S, Lecuit M, , Characterization of the novel Listeria monocytogenes PCR serogrouping profile IVb-v1., Int J Food Microbiol 2011 May; 147(1): 74-7.

Balanovsky O, Dibirova K, Dybo A, Mudrak O, Frolova S, Pocheshkhova E, Haber M, Platt D, Schurr T, Haak W, Kuznetsova M, Radzhabov M, Balaganskaya O, Romanov A, Zakharova T, Soria Hernanz DF, Zalloua P, Koshel S, Ruhlen M, Renfrew C, Wells RS, Tyler-Smith C, Balanovska E, , Parallel evolution of genes and languages in the Caucasus region, Mol. Biol. Evol. 2011 Oct;28(10):2905-20.

Rendueles O, Travier L, Latour-Lambert P, Fontaine T, Magnus J, Denamur E, Ghigo JM, Screening of Escherichia coli species biodiversity reveals new biofilm-associated antiadhesion polysaccharides, MBio 2011;2(3):e00043-11.

Baharoglu Z, Mazel D, , Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics: a route towards multiresistance., Antimicrob Agents Chemother 2011 May; 55(5): 2438-41.

Mauclère P, Afonso PV, Meertens L, Plancoulaine S, Calattini S, Froment A, Van Beveren M, de Thé G, Quintana-Murci L, Mahieux R, Gessain A, HTLV-2B strains, similar to those found in several Amerindian tribes, are endemic in central African Bakola Pygmies, J. Infect. Dis. 2011 May;203(9):1316-23.

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Truman RW, Singh P, Sharma R, Busso P, Rougemont J, Paniz-Mondolfi A, Kapopoulou A, Brisse S, Scollard DM, Gillis TP, Cole ST, Probable zoonotic leprosy in the southern United States, N. Engl. J. Med. 2011 Apr;364(17):1626-33.

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Deschaght P, Van Simaey L, Decat E, Van Mechelen E, Brisse S, Vaneechoutte M, Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD), Res. Microbiol. 2011 May;162(4):386-92.

Ludwig M, Palha N, Torhy C, Briolat V, Colucci-Guyon E, Brémont M, Herbomel P, Boudinot P, Levraud JP, , Whole-body analysis of a viral infection: vascular endothelium is a primary target of infectious hematopoietic necrosis virus in zebrafish larvae., PLoS Pathog. 2011 Feb; 7(2): e1001269.

Coulibaly-N'Golo GM, Ekaza E, Coulibaly B, Aka N, N'guessan RK, Thiberge JM, Caro V, Brisse S, Bretin-Dosso M, Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire, J Infect Dev Ctries 2011 Feb;5(1):59-63.

Di Popolo A, Giannouli M, Triassi M, Brisse S, Zarrilli R, Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme, Clin. Microbiol. Infect. 2011 Feb;17(2):197-201.

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Treangen TJ, Rocha EP, Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes, PLoS Genet. 2011;7(1):e1001284.

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Casanova JL, Abel L, Quintana-Murci L, Human TLRs and IL-1Rs in host defense: natural insights from evolutionary, epidemiological, and clinical genetics, Annu. Rev. Immunol. 2011;29:447-91.

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Rapp JB, Noguchi C, Das MM, Wong LK, Ansbach AB, Holmes AM, Arcangioli B, Noguchi E, Checkpoint-dependent and -independent roles of Swi3 in replication fork recovery and sister chromatid cohesion in fission yeast, PLoS ONE 2010;5(10):e13379.

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Ferrières L, Hémery G, Nham T, Guérout AM, Mazel D, Beloin C, Ghigo JM, Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery, J. Bacteriol. 2010 Dec;192(24):6418-27.

Sangal V, Harbottle H, Mazzoni CJ, Helmuth R, Guerra B, Didelot X, Paglietti B, Rabsch W, Brisse S, Weill FX, Roumagnac P, Achtman M, Evolution and population structure of Salmonella enterica serovar Newport, J. Bacteriol. 2010 Dec;192(24):6465-76.

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Santos J, González-Sánchez L, Villa-Morales M, Ors I, López-Nieva P, Vaquero C, González-Gugel E, Fernández-Navarro P, Roncero AM, Guenet JL, Montagutelli X, Fernández-Piqueras J, , The stromal gene encoding the CD274 antigen as a genetic modifier controlling survival of mice with γ-radiation-induced T-cell lymphoblastic lymphomas., Oncogene 2010 Sep; 29(38): 5265-73.

Dangla R, Gallaire F, Baroud CN, Microchannel deformations due to solvent-induced PDMS swelling, Lab Chip 2010 Nov;10(21):2972-8.

Enache-Angoulvant A, Bourget M, Brisse S, Stockman-Pannier C, Diancourt L, François N, Rimek D, Fairhead C, Poulain D, Hennequin C, Multilocus microsatellite markers for molecular typing of Candida glabrata: application to analysis of genetic relationships between bloodstream and digestive system isolates, J. Clin. Microbiol. 2010 Nov;48(11):4028-34.

Rocha EP, Feil EJ, Mutational patterns cannot explain genome composition: Are there any neutral sites in the genomes of bacteria?, PLoS Genet. 2010 Sep;6(9):e1001104.

Martínez-Cruz B, Vitalis R, Ségurel L, Austerlitz F, Georges M, Théry S, Quintana-Murci L, Hegay T, Aldashev A, Nasyrova F, Heyer E, In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations, Eur. J. Hum. Genet. 2011 Feb;19(2):216-23.

Le Roux F, Labreuche Y, Davis BM, Iqbal N, Mangenot S, Goarant C, Mazel D, Waldor MK, Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids, Environ. Microbiol. 2011 Feb;13(2):296-306.

Thompson FL, Thompson CC, Vicente AC, Klose KE, , Vibrio2009: the third international conference on the biology of Vibrios, Mol. Microbiol. 2010 Sep;77(5):1065-71.

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Loot C, Bikard D, Rachlin A, Mazel D, Cellular pathways controlling integron cassette site folding., EMBO J 2010 Aug; 29(15): 2623-34.

Zhadanov SI, Dulik MC, Markley M, Jennings GW, Gaieski JB, Elias G, Schurr TG, , Genetic heritage and native identity of the Seaconke Wampanoag tribe of Massachusetts, Am. J. Phys. Anthropol. 2010 Aug;142(4):579-89.

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Abbyad P, Tharaux PL, Martin JL, Baroud CN, Alexandrou A, Sickling of red blood cells through rapid oxygen exchange in microfluidic drops, Lab Chip 2010 Oct;10(19):2505-12.

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Touchon M, Rocha EP, The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella, PLoS ONE 2010;5(6):e11126.

Thiberge JM, Boursaux-Eude C, Lehours P, Dillies MA, Creno S, Coppée JY, Rouy Z, Lajus A, Ma L, Burucoa C, Ruskoné-Foumestraux A, Courillon-Mallet A, De Reuse H, Boneca IG, Lamarque D, Mégraud F, Delchier JC, Médigue C, Bouchier C, Labigne A, Raymond J, From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma, BMC Genomics 2010;11:368.

Bikard D, Julié-Galau S, Cambray G, Mazel D, The synthetic integron: an in vivo genetic shuffling device, Nucleic Acids Res. 2010 Aug;38(15):e153.

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d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, Flutre T, Couloux A, East P, Gordon K, Mita K, Quesneville H, Fournier P, Feyereisen R, Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements, Proc. Natl. Acad. Sci. U.S.A. 2010 Apr;107(17):7680-5.

Vieira-Silva S, Touchon M, Rocha EP, No evidence for elemental-based streamlining of prokaryotic genomes, Trends Ecol. Evol. (Amst.) 2010 Jun;25(6):319-20; author reply 320-1.

Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S, The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool, PLoS ONE 2010;5(4):e10034.

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Quintana-Murci L, Harmant C, Quach H, Balanovsky O, Zaporozhchenko V, Bormans C, van Helden PD, Hoal EG, Behar DM, Strong maternal Khoisan contribution to the South African coloured population: a case of gender-biased admixture, Am. J. Hum. Genet. 2010 Apr;86(4):611-20.

Rankin DJ, Rocha EP, Brown SP, What traits are carried on mobile genetic elements, and why?, Heredity (Edinb) 2011 Jan;106(1):1-10.

Bob NS, Diop BM, Renaud F, Marrama L, Durand P, Tall A, Ka B, Ekala MT, Bouchier C, Mercereau-Puijalon O, Jambou R, Parasite polymorphism and severe malaria in Dakar (Senegal): a West African urban area, PLoS ONE 2010;5(3):e9817.

Andriantsoanirina V, Bouchier C, Tichit M, Jahevitra M, Rabearimanana S, Randrianjafy R, Ratsimbasoa A, Mercereau-Puijalon O, Durand R, Ménard D, Origins of the recent emergence of Plasmodium falciparum pyrimethamine resistance alleles in Madagascar, Antimicrob. Agents Chemother. 2010 Jun;54(6):2323-9.

Ménard D, Barnadas C, Bouchier C, Henry-Halldin C, Gray LR, Ratsimbasoa A, Thonier V, Carod JF, Domarle O, Colin Y, Bertrand O, Picot J, King CL, Grimberg BT, Mercereau-Puijalon O, Zimmerman PA, Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people, Proc. Natl. Acad. Sci. U.S.A. 2010 Mar;107(13):5967-71.

Najjar I, Deglesne PA, Schischmanoff PO, Fabre EE, Boisson-Dupuis S, Nimmerjahn F, Bornkamm GW, Dusanter-Fourt I, Fagard R, STAT1-dependent IgG cell-surface expression in a human B cell line derived from a STAT1-deficient patient, J. Leukoc. Biol. 2010 Jun;87(6):1145-52.

Lesage S, Patin E, Condroyer C, Leutenegger AL, Lohmann E, Giladi N, Bar-Shira A, Belarbi S, Hecham N, Pollak P, Ouvrard-Hernandez AM, Bardien S, Carr J, Benhassine T, Tomiyama H, Pirkevi C, Hamadouche T, Cazeneuve C, Basak AN, Hattori N, Dürr A, Tazir M, Orr-Urtreger A, Quintana-Murci L, Brice A, , Parkinson’s disease-related LRRK2 G2019S mutation results from independent mutational events in humans, Hum. Mol. Genet. 2010 May;19(10):1998-2004.

Lim P, Wongsrichanalai C, Chim P, Khim N, Kim S, Chy S, Sem R, Nhem S, Yi P, Duong S, Bouth DM, Genton B, Beck HP, Gobert JG, Rogers WO, Coppee JY, Fandeur T, Mercereau-Puijalon O, Ringwald P, Le Bras J, Ariey F, Decreased in vitro susceptibility of Plasmodium falciparum isolates to artesunate, mefloquine, chloroquine, and quinine in Cambodia from 2001 to 2007, Antimicrob. Agents Chemother. 2010 May;54(5):2135-42.

Pallafacchina G, François S, Regnault B, Czarny B, Dive V, Cumano A, Montarras D, Buckingham M, An adult tissue-specific stem cell in its niche: a gene profiling analysis of in vivo quiescent and activated muscle satellite cells., Stem Cell Res 2010 Mar; 4(2): 77-91.

Cassar O, Bassot S, Plancoulaine S, Quintana-Murci L, Harmant C, Gurtsevitch V, Senyuta NB, Yakovleva LS, de The G, Gessain A, Human herpesvirus 8, Southern Siberia, Emerging Infect. Dis. 2010 Mar;16(3):580-2.

Aguilera A, Souza-Egipsy V, González-Toril E, Rendueles O, Amils R, Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermalhot springs, Int. Microbiol. 2010 Mar;13(1):21-32.

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Giannouli M, Cuccurullo S, Crivaro V, Di Popolo A, Bernardo M, Tomasone F, Amato G, Brisse S, Triassi M, Utili R, Zarrilli R, Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a tertiary care hospital in Naples, Italy, shows the emergence of a novel epidemic clone, J. Clin. Microbiol. 2010 Apr;48(4):1223-30.

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Cazalet C, Gomez-Valero L, Rusniok C, Lomma M, Dervins-Ravault D, Newton HJ, Sansom FM, Jarraud S, Zidane N, Ma L, Bouchier C, Etienne J, Hartland EL, Buchrieser C, Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires’ disease., PLoS Genet 2010 Feb; 6(2): e1000851.

Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppée JY, Bertin PN, Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans, BMC Microbiol. 2010;10:53.

Najjar I, Fagard R, STAT1 and pathogens, not a friendly relationship, Biochimie 2010 May;92(5):425-44.

Rusniok C, Couvé E, Da Cunha V, El Gana R, Zidane N, Bouchier C, Poyart C, Leclercq R, Trieu-Cuot P, Glaser P, Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis, J. Bacteriol. 2010 Apr;192(8):2266-76.

Chayot R, Montagne B, Mazel D, Ricchetti M, , An end-joining repair mechanism in Escherichia coli., Proc Natl Acad Sci U S A 2010 Feb; 107(5): 2141-6.

L'Hôte D, Laissue P, Serres C, Montagutelli X, Veitia RA, Vaiman D, , Interspecific resources: a major tool for quantitative trait locus cloning and speciation research., Bioessays 2010 Feb; 32(2): 132-42.

Das B, Bischerour J, Val ME, Barre FX, Molecular keys of the tropism of integration of the cholera toxin phage., Proc Natl Acad Sci U S A 2010 Mar; 107(9): 4377-82.

San Millan A, Garcia-Cobos S, Escudero JA, Hidalgo L, Gutierrez B, Carrilero L, Campos J, Gonzalez-Zorn B, Haemophilus influenzae clinical isolates with plasmid pB1000 bearing blaROB-1: fitness cost and interspecies dissemination, Antimicrob. Agents Chemother. 2010 Apr;54(4):1506-11.

Vieira-Silva S, Rocha EP, The systemic imprint of growth and its uses in ecological (meta)genomics, PLoS Genet. 2010 Jan;6(1):e1000808.

Duperthuy M, Binesse J, Le Roux F, Romestand B, Caro A, Got P, Givaudan A, Mazel D, Bachère E, Destoumieux-Garzón D, The major outer membrane protein OmpU of Vibrio splendidus contributes to host antimicrobial peptide resistance and is required for virulence in the oyster Crassostrea gigas, Environ. Microbiol. 2010 Apr;12(4):951-63.

Delétoile A, Passet V, Aires J, Chambaud I, Butel MJ, Smokvina T, Brisse S, Species delineation and clonal diversity in four Bifidobacterium species as revealed by multilocus sequencing, Res. Microbiol. 2010 Mar;161(2):82-90.

Jové T, Da Re S, Denis F, Mazel D, Ploy MC, Inverse correlation between promoter strength and excision activity in class 1 integrons, PLoS Genet. 2010 Jan;6(1):e1000793.

Ronan Jambou, Axel Martinelli, João Pinto, Simonetta Gribaldo, Eric Legrand, Makhtar Niang, Nimol Kim, Lim Pharath, Béatrice Volnay, Marie Therese Ekala, Christiane Bouchier, Thierry Fandeur, Pedro Berzosa, Agustin Benito, Isabel Dinis Ferreira, Cynthia Ferreira, Pedro Paulo Vieira, Maria das Graças Alecrim, Odile Mercereau-Puijalon, Pedro Cravo, Geographic structuring of the Plasmodium falciparum sarco(endo)plasmic reticulum Ca2+ ATPase (PfSERCA) gene diversity., PLoS ONE, 2010, 5 (2), pp.e9424. ⟨10.1371/journal.pone.0009424⟩.

Cambray G, Guerout AM, Mazel D, Integrons, Annu. Rev. Genet. 2010;44:141-66.

Guérin E, Cambray G, Da Re S, Mazel D, Ploy MC, [The SOS response controls antibiotic resistance by regulating the integrase of integrons], Med Sci (Paris) 2010 Jan;26(1):28-30.

Neyrolles O, Quintana-Murci L, Sexual inequality in tuberculosis, PLoS Med. 2009 Dec;6(12):e1000199.

Mil-Homens D, Rocha EP, Fialho AM, Genome-wide analysis of DNA repeats in Burkholderia cenocepacia J2315 identifies a novel adhesin-like gene unique to epidemic-associated strains of the ET-12 lineage, Microbiology (Reading, Engl.) 2010 Apr;156(Pt 4):1084-96.

Louicharoen C, Patin E, Paul R, Nuchprayoon I, Witoonpanich B, Peerapittayamongkol C, Casademont I, Sura T, Laird NM, Singhasivanon P, Quintana-Murci L, Sakuntabhai A, Positively selected G6PD-Mahidol mutation reduces Plasmodium vivax density in Southeast Asians, Science 2009 Dec;326(5959):1546-9.

Barreiro LB, Quintana-Murci L, From evolutionary genetics to human immunology: how selection shapes host defence genes, Nat. Rev. Genet. 2010 Jan;11(1):17-30.

Fagegaltier D, Bougé AL, Berry B, Poisot E, Sismeiro O, Coppée JY, Théodore L, Voinnet O, Antoniewski C, The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila, Proc. Natl. Acad. Sci. U.S.A. 2009 Dec;106(50):21258-63.

Thierry A, Dujon B, Richard GF, Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata, Cell. Mol. Life Sci. 2010 Mar;67(5):671-6.

Kafasla P, Barrass JD, Thompson E, Fromont-Racine M, Jacquier A, Beggs JD, Lewis J, Interaction of yeast eIF4G with spliceosome components: implications in pre-mRNA processing events, RNA Biol 2009 Nov-Dec;6(5):563-74.

Frumerie C, Ducos-Galand M, Gopaul DN, Mazel D, The relaxed requirements of the integron cleavage site allow predictable changes in integron target specificity, Nucleic Acids Res. 2010 Jan;38(2):559-69.

Pothlichet J, Burtey A, Kubarenko AV, Caignard G, Solhonne B, Tangy F, Ben-Ali M, Quintana-Murci L, Heinzmann A, Chiche JD, Vidalain PO, Weber AN, Chignard M, Si-Tahar M, Study of human RIG-I polymorphisms identifies two variants with an opposite impact on the antiviral immune response, PLoS ONE 2009;4(10):e7582.

Koszul R, Kleckner N, Dynamic chromosome movements during meiosis: a way to eliminate unwanted connections?, Trends Cell Biol. 2009 Dec;19(12):716-24.

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Matondo M, Bousquet-Dubouch MP, Gallay N, Uttenweiler-Joseph S, Recher C, Payrastre B, Manenti S, Monsarrat B, Burlet-Schiltz O, Proteasome inhibitor-induced apoptosis in acute myeloid leukemia: a correlation with the proteasome status, Leuk. Res. 2010 Apr;34(4):498-506.

Regnault B, Osorio Y Fortea J, Miao D, Eisenbarth G, Melanitou E, Early over expression of messenger RNA for multiple genes, including insulin, in the Pancreatic Lymph Nodes of NOD mice is associated with Islet Autoimmunity, BMC Med Genomics 2009;2:63.

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Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E, Comparative genomics of protoploid Saccharomycetaceae., Genome Res 2009 Oct; 19(10): 1696-709.

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Monfort L, Caro V, Devaux Z, Delannoy AS, Brisse S, Sednaoui P, First neisseria gonorrhoeae genotyping analysis in france: identification of a strain cluster with reduced susceptibility to Ceftriaxone, J. Clin. Microbiol. 2009 Nov;47(11):3540-5.

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Elhani D, Bakir L, Aouni M, Passet V, Arlet G, Brisse S, Weill FX, Molecular epidemiology of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999-2005, Clin. Microbiol. Infect. 2010 Feb;16(2):157-64.

Abraham AL, Pothier J, Rocha EP, Alternative to homo-oligomerisation: the creation of local symmetry in proteins by internal amplification, J. Mol. Biol. 2009 Dec;394(3):522-34.

Ortiz M, Guex N, Patin E, Martin O, Xenarios I, Ciuffi A, Quintana-Murci L, Telenti A, Evolutionary trajectories of primate genes involved in HIV pathogenesis, Mol. Biol. Evol. 2009 Dec;26(12):2865-75.

Bouvier M, Ducos-Galand M, Loot C, Bikard D, Mazel D, Structural features of single-stranded integron cassette attC sites and their role in strand selection., PLoS Genet 2009 Sep; 5(9): e1000632.

Heyer E, Balaresque P, Jobling MA, Quintana-Murci L, Chaix R, Segurel L, Aldashev A, Hegay T, Genetic diversity and the emergence of ethnic groups in Central Asia, BMC Genet. 2009;10:49.

Arcangioli B, Ben Hassine S, Unrepaired oxidative DNA damage induces an ATR/ATM apoptotic-like response in quiescent fission yeast, Cell Cycle 2009 Aug;8(15):2326-31.

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El-Sibai M, Platt DE, Haber M, Xue Y, Youhanna SC, Wells RS, Izaabel H, Sanyoura MF, Harmanani H, Bonab MA, Behbehani J, Hashwa F, Tyler-Smith C, Zalloua PA, , Geographical structure of the Y-chromosomal genetic landscape of the Levant: a coastal-inland contrast, Ann. Hum. Genet. 2009 Nov;73(Pt 6):568-81.

Oliveira PH, Prazeres DM, Monteiro GA, Deletion formation mutations in plasmid expression vectors are unfavored by runaway amplification conditions and differentially selected under kanamycin stress, J. Biotechnol. 2009 Sep;143(4):231-8.

van Schaik W, Château A, Dillies MA, Coppée JY, Sonenshein AL, Fouet A, The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence, Infect. Immun. 2009 Oct;77(10):4437-45.

Bierne H, Tham TN, Batsche E, Dumay A, Leguillou M, Kernéis-Golsteyn S, Regnault B, Seeler JS, Muchardt C, Feunteun J, Cossart P, Human BAHD1 promotes heterochromatic gene silencing, Proc. Natl. Acad. Sci. U.S.A. 2009 Aug;106(33):13826-31.

Oliveira PH, Prather KJ, Prazeres DM, Monteiro GA, Structural instability of plasmid biopharmaceuticals: challenges and implications, Trends Biotechnol. 2009 Sep;27(9):503-11.

Forquin MP, Duvergey H, Proux C, Loux V, Mounier J, Landaud S, Coppée JY, Gibrat JF, Bonnarme P, Martin-Verstraete I, Vallaeys T, Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses, Appl. Environ. Microbiol. 2009 Oct;75(19):6406-9.

Soler Bistué AJ, Martín FA, Vozza N, Ha H, Joaquín JC, Zorreguieta A, Tolmasky ME, Inhibition of aac(6′)-Ib-mediated amikacin resistance by nuclease-resistant external guide sequences in bacteria, Proc. Natl. Acad. Sci. U.S.A. 2009 Aug;106(32):13230-5.

Paragas N, Nickolas TL, Wyatt C, Forster CS, Sise M, Morgello S, Jagla B, Buchen C, Stella P, Sanna-Cherchi S, Carnevali ML, Mattei S, Bovino A, Argentiero L, Magnano A, Devarajan P, Schmidt-Ott KM, Allegri L, Klotman P, D'Agati V, Gharavi AG, Barasch J, Urinary NGAL marks cystic disease in HIV-associated nephropathy, J. Am. Soc. Nephrol. 2009 Aug;20(8):1687-92.

Ivanova EP, Christen R, Bizet C, Clermont D, Motreff L, Bouchier C, Zhukova NV, Crawford RJ, Kiprianova EA, , Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants., Int J Syst Evol Microbiol 2009 Oct; 59(Pt 10): 2476-81.

Barreiro LB, Ben-Ali M, Quach H, Laval G, Patin E, Pickrell JK, Bouchier C, Tichit M, Neyrolles O, Gicquel B, Kidd JR, Kidd KK, Alcaïs A, Ragimbeau J, Pellegrini S, Abel L, Casanova JL, Quintana-Murci L, Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense, PLoS Genet. 2009 Jul;5(7):e1000562.

Bouchier C, Ma L, Créno S, Dujon B, Fairhead C, Complete mitochondrial genome sequences of three Nakaseomyces species reveal invasion by palindromic GC clusters and considerable size expansion, FEMS Yeast Res. 2009 Dec;9(8):1283-92.

Payen C, Fischer G, Marck C, Proux C, Sherman DJ, Coppée JY, Johnston M, Dujon B, Neuvéglise C, Unusual composition of a yeast chromosome arm is associated with its delayed replication, Genome Res. 2009 Oct;19(10):1710-21.

Barnadas C, Musset L, Legrand E, Tichit M, Briolant S, Fusai T, Rogier C, Bouchier C, Picot S, Ménard D, , High prevalence and fixation of Plasmodium vivax dhfr/dhps mutations related to sulfadoxine/pyrimethamine resistance in French Guiana., Am J Trop Med Hyg 2009 Jul; 81(1): 19-22.

Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H, Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy M, Vergassola M, Nahori MA, Soubigou G, Régnault B, Coppée JY, Lecuit M, Johansson J, Cossart P, , The Listeria transcriptional landscape from saprophytism to virulence., Nature 2009 Jun; 459(7249): 950-6.

San Millan A, Escudero JA, Gutierrez B, Hidalgo L, Garcia N, Llagostera M, Dominguez L, Gonzalez-Zorn B, Multiresistance in Pasteurella multocida is mediated by coexistence of small plasmids, Antimicrob. Agents Chemother. 2009 Aug;53(8):3399-404.

Soutourina O, Poupel O, Coppée JY, Danchin A, Msadek T, Martin-Verstraete I, CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation, Mol. Microbiol. 2009 Jul;73(2):194-211.

van Asten L, van der Lubben M, van den Wijngaard C, van Pelt W, Verheij R, Jacobi A, Overduin P, Meijer A, Luijt D, Claas E, Hermans M, Melchers W, Rossen J, Schuurman R, Wolffs P, Boucher C, Bouchier C, Schirm J, Kroes L, Leenders S, Galama J, Peeters M, van Loon A, Stobberingh E, Schutten M, Koopmans M, Strengthening the diagnostic capacity to detect Bio Safety Level 3 organisms in unusual respiratory viral outbreaks, J. Clin. Virol. 2009 Jul;45(3):185-90.

Burgio G, Baylac M, Heyer E, Montagutelli X, Genetic analysis of skull shape variation and morphological integration in the mouse using interspecific recombinant congenic strains between C57BL/6 and mice of the mus spretus species, Evolution 2009 Oct;63(10):2668-86.

Jacquier H, Zaoui C, Sanson-le Pors MJ, Mazel D, Berçot B, Translation regulation of integrons gene cassette expression by the attC sites, Mol. Microbiol. 2009 Jun;72(6):1475-86.

Andriantsoanirina V, Lascombes V, Ratsimbasoa A, Bouchier C, Hoffman J, Tichit M, Rabarijaona LP, Durand R, Ménard D, Rapid detection of point mutations in Plasmodium falciparum genes associated with antimalarial drugs resistance by using High-Resolution Melting analysis, J. Microbiol. Methods 2009 Aug;78(2):165-70.

Guerin E, Cambray G, Sanchez-Alberola N, Campoy S, Erill I, Da Re S, Gonzalez-Zorn B, Barbé J, Ploy MC, Mazel D, The SOS response controls integron recombination, Science 2009 May;324(5930):1034.

Verneuil E, Cordero M, Gallaire F, Baroud CN, Laser-induced force on a microfluidic drop: origin and magnitude, Langmuir 2009 May;25(9):5127-34.

Clermont D, Diard S, Bouchier C, Vivier C, Bimet F, Motreff L, Welker M, Kallow W, Bizet C, Microbacterium binotii sp. nov., isolated from human blood, Int. J. Syst. Evol. Microbiol. 2009 May;59(Pt 5):1016-22.

Treangen TJ, Abraham AL, Touchon M, Rocha EP, Genesis, effects and fates of repeats in prokaryotic genomes, FEMS Microbiol. Rev. 2009 May;33(3):539-71.

Dejager L, Libert C, Montagutelli X, , Thirty years of Mus spretus: a promising future., Trends Genet. 2009 May; 25(5): 234-41.

Berniell-Lee G, Calafell F, Bosch E, Heyer E, Sica L, Mouguiama-Daouda P, van der Veen L, Hombert JM, Quintana-Murci L, Comas D, Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages, Mol. Biol. Evol. 2009 Jul;26(7):1581-9.

Patin E, Laval G, Barreiro LB, Salas A, Semino O, Santachiara-Benerecetti S, Kidd KK, Kidd JR, Van der Veen L, Hombert JM, Gessain A, Froment A, Bahuchet S, Heyer E, Quintana-Murci L, Inferring the demographic history of African farmers and pygmy hunter-gatherers using a multilocus resequencing data set, PLoS Genet. 2009 Apr;5(4):e1000448.

Le Roux F, Zouine M, Chakroun N, Binesse J, Saulnier D, Bouchier C, Zidane N, Ma L, Rusniok C, Lajus A, Buchrieser C, Médigue C, Polz MF, Mazel D, Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity, Environ. Microbiol. 2009 Aug;11(8):1959-70.

Treangen TJ, Darling AE, Achaz G, Ragan MA, Messeguer X, Rocha EP, A novel heuristic for local multiple alignment of interspersed DNA repeats, IEEE/ACM Trans Comput Biol Bioinform 2009 Apr-Jun;6(2):180-9.

Brisse S, Fevre C, Passet V, Issenhuth-Jeanjean S, Tournebize R, Diancourt L, Grimont P, Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization, PLoS ONE 2009;4(3):e4982.

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Koszul R, Fischer G, A prominent role for segmental duplications in modeling eukaryotic genomes, C. R. Biol. 2009 Feb-Mar;332(2-3):254-66.

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Behar DM, Blue-Smith J, Soria-Hernanz DF, Tzur S, Hadid Y, Bormans C, Moen A, Tyler-Smith C, Quintana-Murci L, Wells RS, , A novel 154-bp deletion in the human mitochondrial DNA control region in healthy individuals, Hum. Mutat. 2008 Dec;29(12):1387-91.

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Ngoc LB, Verniere C, Vital K, Guerin F, Gagnevin L, Brisse S, Ah-You N, Pruvost O, Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citri, Mol Ecol Resour 2009 Jan;9(1):125-7.

Binesse J, Delsert C, Saulnier D, Champomier-Vergès MC, Zagorec M, Munier-Lehmann H, Mazel D, Le Roux F, Metalloprotease vsm is the major determinant of toxicity for extracellular products of Vibrio splendidus, Appl. Environ. Microbiol. 2008 Dec;74(23):7108-17.

Balaresque P, Bowden GR, Parkin EJ, Omran GA, Heyer E, Quintana-Murci L, Roewer L, Stoneking M, Nasidze I, Carvalho-Silva DR, Tyler-Smith C, de Knijff P, Jobling MA, Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis, Hum. Mutat. 2008 Oct;29(10):1171-80.

Vimont S, Mnif B, Fevre C, Brisse S, Comparison of PFGE and multilocus sequence typing for analysis of Klebsiella pneumoniae isolates, J. Med. Microbiol. 2008 Oct;57(Pt 10):1308-10.

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Guermonprez H, Loot C, Casacuberta JM, Different strategies to persist: the pogo-like Lemi1 transposon produces miniature inverted-repeat transposable elements or typical defective elements in different plant genomes., Genetics 2008 Sep; 180(1): 83-92.

Natalang O, Bischoff E, Deplaine G, Proux C, Dillies MA, Sismeiro O, Guigon G, Bonnefoy S, Patarapotikul J, Mercereau-Puijalon O, Coppée JY, David PH, Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate, BMC Genomics 2008;9:388.

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Lebreton A, Rousselle JC, Lenormand P, Namane A, Jacquier A, Fromont-Racine M, Saveanu C, 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes, Nucleic Acids Res. 2008 Sep;36(15):4988-99.

Le Breton C, Dupaigne P, Robert T, Le Cam E, Gangloff S, Fabre F, Veaute X, Srs2 removes deadly recombination intermediates independently of its interaction with SUMO-modified PCNA, Nucleic Acids Res. 2008 Sep;36(15):4964-74.

Coppée JY, Do DNA microarrays have their future behind them?, Microbes Infect. 2008 Jul;10(9):1067-71.

Cadel-Six S, Dauga C, Castets AM, Rippka R, Bouchier C, Tandeau de Marsac N, Welker M, Halogenase genes in nonribosomal peptide synthetase gene clusters of Microcystis (cyanobacteria): sporadic distribution and evolution, Mol. Biol. Evol. 2008 Sep;25(9):2031-41.

Ribeiro SC, Oliveira PH, Prazeres DM, Monteiro GA, High frequency plasmid recombination mediated by 28 bp direct repeats, Mol. Biotechnol. 2008 Nov;40(3):252-60.

Ménard D, Andriantsoanirina V, Jahevitra M, Barnadas C, Tichit M, Bouchier C, Hopkins Sibley C, Dihydrofolate reductase I164L mutation in Plasmodium falciparum, Madagascar, Emerging Infect. Dis. 2008 Jul;14(7):1166-7.

Vivas JR, Regnault B, Michel V, Bussière FI, Avé P, Huerre M, Labigne A, D' Elios MM, Touati E, Interferon gamma-signature transcript profiling and IL-23 upregulation in response to Helicobacter pylori infection, Int J Immunopathol Pharmacol 2008 Jul-Sep;21(3):515-26.

Zhang J, Zhang X, Fu J, Bi Z, Arheart KL, Barreiro LB, Quintana-Murci L, Pahwa S, Liu H, Protective role of DC-SIGN (CD209) neck-region alleles with <5 repeat units in HIV-1 transmission, J. Infect. Dis. 2008 Jul;198(1):68-71.

Chaix R, Austerlitz F, Hegay T, Quintana-Murci L, Heyer E, Genetic traces of east-to-west human expansion waves in Eurasia, Am. J. Phys. Anthropol. 2008 Jul;136(3):309-17.

Babic A, Guérout AM, Mazel D, Construction of an improved RP4 (RK2)-based conjugative system, Res. Microbiol. 2008 Sep-Oct;159(7-8):545-9.

Koszul R, Kim KP, Prentiss M, Kleckner N, Kameoka S, Meiotic chromosomes move by linkage to dynamic actin cables with transduction of force through the nuclear envelope, Cell 2008 Jun;133(7):1188-201.

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Baroud CN, Wang XC, Masson JB, Collective behavior during the exit of a wetting liquid through a network of channels, J Colloid Interface Sci 2008 Oct;326(2):445-50.

Vieira-Silva S, Rocha EP, An assessment of the impacts of molecular oxygen on the evolution of proteomes, Mol. Biol. Evol. 2008 Sep;25(9):1931-42.

Frangeul L, Quillardet P, Castets AM, Humbert JF, Matthijs HC, Cortez D, Tolonen A, Zhang CC, Gribaldo S, Kehr JC, Zilliges Y, Ziemert N, Becker S, Talla E, Latifi A, Billault A, Lepelletier A, Dittmann E, Bouchier C, de Marsac NT, Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium, BMC Genomics 2008;9:274.

Abraham AL, Rocha EP, Pothier J, Swelfe: a detector of internal repeats in sequences and structures, Bioinformatics 2008 Jul;24(13):1536-7.

Nemec A, Krízová L, Maixnerová M, Diancourt L, van der Reijden TJ, Brisse S, van den Broek P, Dijkshoorn L, Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II, J. Antimicrob. Chemother. 2008 Sep;62(3):484-9.

Assunção WG, Tabata LF, Barão VA, Rocha EP, Comparison of stress distribution between complete denture and implant-retained overdenture-2D FEA, J Oral Rehabil 2008 Oct;35(10):766-74.

Guigon G, Cheval J, Cahuzac R, Brisse S, MLVA-NET–a standardised web database for bacterial genotyping and surveillance, Euro Surveill. 2008 May;13(19).

Delmas O, Holmes EC, Talbi C, Larrous F, Dacheux L, Bouchier C, Bourhy H, Genomic diversity and evolution of the lyssaviruses, PLoS ONE 2008 Apr;3(4):e2057.

Behar DM, Villems R, Soodyall H, Blue-Smith J, Pereira L, Metspalu E, Scozzari R, Makkan H, Tzur S, Comas D, Bertranpetit J, Quintana-Murci L, Tyler-Smith C, Wells RS, Rosset S, , The dawn of human matrilineal diversity, Am. J. Hum. Genet. 2008 May;82(5):1130-40.

Sperandio B, Regnault B, Guo J, Zhang Z, Stanley SL, Sansonetti PJ, Pédron T, Virulent Shigella flexneri subverts the host innate immune response through manipulation of antimicrobial peptide gene expression, J. Exp. Med. 2008 May;205(5):1121-32.

Blazquez S, Guigon G, Weber C, Syan S, Sismeiro O, Coppée JY, Labruyère E, Guillén N, Chemotaxis of Entamoeba histolytica towards the pro-inflammatory cytokine TNF is based on PI3K signalling, cytoskeleton reorganization and the Galactose/N-acetylgalactosamine lectin activity, Cell. Microbiol. 2008 Aug;10(8):1676-86.

Decourty L, Saveanu C, Zemam K, Hantraye F, Frachon E, Rousselle JC, Fromont-Racine M, Jacquier A, Linking functionally related genes by sensitive and quantitative characterization of genetic interaction profiles, Proc. Natl. Acad. Sci. U.S.A. 2008 Apr;105(15):5821-6.

Roseaulin L, Yamada Y, Tsutsui Y, Russell P, Iwasaki H, Arcangioli B, Mus81 is essential for sister chromatid recombination at broken replication forks, EMBO J. 2008 May;27(9):1378-87.

Fernandez MI, Regnault B, Mulet C, Tanguy M, Jay P, Sansonetti PJ, Pédron T, Maturation of paneth cells induces the refractory state of newborn mice to Shigella infection, J. Immunol. 2008 Apr;180(7):4924-30.

Osorio Y Fortéa J, Prina E, Lang T, Milon G, Davory C, Coppée JY, Regnault B, AffyGCQC: a web-based interface to detect outlying genechips with extreme studentized deviate tests, J Bioinform Comput Biol 2008 Apr;6(2):317-34.

Labalette C, Nouët Y, Sobczak-Thepot J, Armengol C, Levillayer F, Gendron MC, Renard CA, Regnault B, Chen J, Buendia MA, Wei Y, The LIM-only protein FHL2 regulates cyclin D1 expression and cell proliferation, J. Biol. Chem. 2008 May;283(22):15201-8.

Zalloua PA, Xue Y, Khalife J, Makhoul N, Debiane L, Platt DE, Royyuru AK, Herrera RJ, Hernanz DF, Blue-Smith J, Wells RS, Comas D, Bertranpetit J, Tyler-Smith C, , Y-chromosomal diversity in Lebanon is structured by recent historical events, Am. J. Hum. Genet. 2008 Apr;82(4):873-82.

Tuikue Ndam N, Bischoff E, Proux C, Lavstsen T, Salanti A, Guitard J, Nielsen MA, Coppée JY, Gaye A, Theander T, David PH, Deloron P, Plasmodium falciparum transcriptome analysis reveals pregnancy malaria associated gene expression, PLoS ONE 2008;3(3):e1855.

Treangen TJ, Ambur OH, Tonjum T, Rocha EP, The impact of the neisserial DNA uptake sequences on genome evolution and stability, Genome Biol. 2008;9(3):R60.

Reynaud Y, Saulnier D, Mazel D, Goarant C, Le Roux F, Correlation between detection of a plasmid and high-level virulence of Vibrio nigripulchritudo, a pathogen of the shrimp Litopenaeus stylirostris, Appl. Environ. Microbiol. 2008 May;74(10):3038-47.

Soler Bistué AJ, Birshan D, Tomaras AP, Dandekar M, Tran T, Newmark J, Bui D, Gupta N, Hernandez K, Sarno R, Zorreguieta A, Actis LA, Tolmasky ME, Klebsiella pneumoniae multiresistance plasmid pMET1: similarity with the Yersinia pestis plasmid pCRY and integrative conjugative elements, PLoS ONE 2008;3(3):e1800.

Baharoglu Z, Bradley AS, Le Masson M, Tsaneva I, Michel B, ruvA Mutants that resolve Holliday junctions but do not reverse replication forks, PLoS Genet. 2008 Mar;4(3):e1000012.

Barnadas C, Tichit M, Bouchier C, Ratsimbasoa A, Randrianasolo L, Raherinjafy R, Jahevitra M, Picot S, Ménard D, Plasmodium vivax dhfr and dhps mutations in isolates from Madagascar and therapeutic response to sulphadoxine-pyrimethamine, Malar. J. 2008 Feb;7:35.

Wilde C, Mazel D, Hochhut B, Middendorf B, Le Roux F, Carniel E, Dobrindt U, Hacker J, Delineation of the recombination sites necessary for integration of pathogenicity islands II and III into the Escherichia coli 536 chromosome, Mol. Microbiol. 2008 Apr;68(1):139-51.

Zilliges Y, Kehr JC, Mikkat S, Bouchier C, de Marsac NT, Börner T, Dittmann E, An extracellular glycoprotein is implicated in cell-cell contacts in the toxic cyanobacterium Microcystis aeruginosa PCC 7806, J. Bacteriol. 2008 Apr;190(8):2871-9.

Dupaigne P, Le Breton C, Fabre F, Gangloff S, Le Cam E, Veaute X, The Srs2 helicase activity is stimulated by Rad51 filaments on dsDNA: implications for crossover incidence during mitotic recombination, Mol. Cell 2008 Feb;29(2):243-54.

Picardeau M, Bulach DM, Bouchier C, Zuerner RL, Zidane N, Wilson PJ, Creno S, Kuczek ES, Bommezzadri S, Davis JC, McGrath A, Johnson MJ, Boursaux-Eude C, Seemann T, Rouy Z, Coppel RL, Rood JI, Lajus A, Davies JK, Médigue C, Adler B, Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis, PLoS ONE 2008;3(2):e1607.

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Magalon H, Patin E, Austerlitz F, Hegay T, Aldashev A, Quintana-Murci L, Heyer E, Population genetic diversity of the NAT2 gene supports a role of acetylation in human adaptation to farming in Central Asia, Eur. J. Hum. Genet. 2008 Feb;16(2):243-51.

Quintana-Murci L, Alcaïs A, Abel L, Casanova JL, Immunology in natura: clinical, epidemiological and evolutionary genetics of infectious diseases, Nat. Immunol. 2007 Nov;8(11):1165-71.

Siau A, Toure FS, Ouwe-Missi-Oukem-Boyer O, Ciceron L, Mahmoudi N, Vaquero C, Froissard P, Bisvigou U, Bisser S, Coppee JY, Bischoff E, David PH, Mazier D, Whole-transcriptome analysis of Plasmodium falciparum field isolates: identification of new pathogenicity factors, J. Infect. Dis. 2007 Dec;196(11):1603-12.

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Ben-Ali M, Barreiro LB, Chabbou A, Haltiti R, Braham E, Neyrolles O, Dellagi K, Gicquel B, Quintana-Murci L, Barbouche MR, Promoter and neck region length variation of DC-SIGN is not associated with susceptibility to tuberculosis in Tunisian patients, Hum. Immunol. 2007 Nov;68(11):908-12.

Jacquelin B, Mayau V, Brysbaert G, Regnault B, Diop OM, Arenzana-Seisdedos F, Rogge L, Coppée JY, Barré-Sinoussi F, Benecke A, Müller-Trutwin MC, , Long oligonucleotide microarrays for African green monkey gene expression profile analysis., FASEB J 2007 Oct; 21(12): 3262-71.

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Touchon M, Rocha EP, From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data, Biochimie 2008 Apr;90(4):648-59.

Demarre G, Frumerie C, Gopaul DN, Mazel D, Identification of key structural determinants of the IntI1 integron integrase that influence attC x attI1 recombination efficiency, Nucleic Acids Res. 2007;35(19):6475-89.

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Crameri A, Marfurt J, Mugittu K, Maire N, Regös A, Coppee JY, Sismeiro O, Burki R, Huber E, Laubscher D, Puijalon O, Genton B, Felger I, Beck HP, Rapid microarray-based method for monitoring of all currently known single-nucleotide polymorphisms associated with parasite resistance to antimalaria drugs, J. Clin. Microbiol. 2007 Nov;45(11):3685-91.

Bailly-Bechet M, Vergassola M, Rocha E, Causes for the intriguing presence of tRNAs in phages, Genome Res. 2007 Oct;17(10):1486-95.

Guljamow A, Jenke-Kodama H, Saumweber H, Quillardet P, Frangeul L, Castets AM, Bouchier C, Tandeau de Marsac N, Dittmann E, Horizontal gene transfer of two cytoskeletal elements from a eukaryote to a cyanobacterium, Curr. Biol. 2007 Sep;17(17):R757-9.

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Schmidt-Ott KM, Masckauchan TN, Chen X, Hirsh BJ, Sarkar A, Yang J, Paragas N, Wallace VA, Dufort D, Pavlidis P, Jagla B, Kitajewski J, Barasch J, beta-catenin/TCF/Lef controls a differentiation-associated transcriptional program in renal epithelial progenitors, Development 2007 Sep;134(17):3177-90.

Haruta N, Akamatsu Y, Tsutsui Y, Kurokawa Y, Murayama Y, Arcangioli B, Iwasaki H, Fission yeast Swi5 protein, a novel DNA recombination mediator, DNA Repair (Amst.) 2008 Jan;7(1):1-9.

Santi-Rocca J, Weber C, Guigon G, Sismeiro O, Coppée JY, Guillén N, The lysine- and glutamic acid-rich protein KERP1 plays a role in Entamoeba histolytica liver abscess pathogenesis, Cell. Microbiol. 2008 Jan;10(1):202-17.

Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S, Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination, Appl. Environ. Microbiol. 2007 Oct;73(20):6601-11.

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Demoinet E, Jacquier A, Lutfalla G, Fromont-Racine M, The Hsp40 chaperone Jjj1 is required for the nucleo-cytoplasmic recycling of preribosomal factors in Saccharomyces cerevisiae, RNA 2007 Sep;13(9):1570-81.

Pertschy B, Saveanu C, Zisser G, Lebreton A, Tengg M, Jacquier A, Liebminger E, Nobis B, Kappel L, van der Klei I, Högenauer G, Fromont-Racine M, Bergler H, Cytoplasmic recycling of 60S preribosomal factors depends on the AAA protein Drg1, Mol. Cell. Biol. 2007 Oct;27(19):6581-92.

Gómez-Valero L, Rocha EP, Latorre A, Silva FJ, Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction., Genome Res 2007 Aug; 17(8): 1178-85.

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Fumio Ike, Franck Bourgade, Kazutaka Ohsawa, Hiroshi Sato, Shigeru Morikawa, Masayuki Saijo, Ichiro Kurane, Kazuhiro Takimoto, Yasuko Yamada, Jean Jaubert, Marion Berard, Hatsumi Nakata, Noriko Hiraiwa, Kazuyuki Mekada, Akira Takakura, Toshio Itoh, Yuichi Obata, Atsushi Yoshiki, Xavier Montagutelli, Lymphocytic choriomeningitis infection undetected by dirty-bedding sentinel monitoring and revealed after embryo transfer of an inbred strain derived from wild mice., Comparative Medicine, 2007, 57 (3), pp.272-281.

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Baroud CN, Delville JP, Gallaire F, Wunenburger R, Thermocapillary valve for droplet production and sorting, Phys Rev E Stat Nonlin Soft Matter Phys 2007 Apr;75(4 Pt 2):046302.

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Akamatsu Y, Tsutsui Y, Morishita T, Siddique MS, Kurokawa Y, Ikeguchi M, Yamao F, Arcangioli B, Iwasaki H, Fission yeast Swi5/Sfr1 and Rhp55/Rhp57 differentially regulate Rhp51-dependent recombination outcomes, EMBO J. 2007 Mar;26(5):1352-62.

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Touchon M, Rocha EP, Causes of insertion sequences abundance in prokaryotic genomes, Mol. Biol. Evol. 2007 Apr;24(4):969-81.

Ochman H, Liu R, Rocha EP, Erosion of interaction networks in reduced and degraded genomes, J. Exp. Zool. B Mol. Dev. Evol. 2007 Jan;308(1):97-103.

Lyoumi S, Abitbol M, Andrieu V, Henin D, Robert E, Schmitt C, Gouya L, de Verneuil H, Deybach JC, Montagutelli X, Beaumont C, Puy H, , Increased plasma transferrin, altered body iron distribution, and microcytic hypochromic anemia in ferrochelatase-deficient mice., Blood 2007 Jan; 109(2): 811-8.

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Xhemalce B, Riising EM, Baumann P, Dejean A, Arcangioli B, Seeler JS, Role of SUMO in the dynamics of telomere maintenance in fission yeast, Proc. Natl. Acad. Sci. U.S.A. 2007 Jan;104(3):893-8.

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Ody CP, Baroud CN, de Langre E, Transport of wetting liquid plugs in bifurcating microfluidic channels, J Colloid Interface Sci 2007 Apr;308(1):231-8.

Murayama E, Kissa K, Zapata A, Mordelet E, Briolat V, Lin HF, Handin RI, Herbomel P, , Tracing hematopoietic precursor migration to successive hematopoietic organs during zebrafish development., Immunity 2006 Dec; 25(6): 963-75.

Barreiro LB, Neyrolles O, Babb CL, van Helden PD, Gicquel B, Hoal EG, Quintana-Murci L, Length variation of DC-SIGN and L-SIGN neck-region has no impact on tuberculosis susceptibility, Hum. Immunol. 2007 Feb;68(2):106-12.

Vilasco M, Larrea E, Vitour D, Dabo S, Breiman A, Regnault B, Riezu JI, Eid P, Prieto J, Meurs EF, The protein kinase IKKepsilon can inhibit HCV expression independently of IFN and its own expression is downregulated in HCV-infected livers, Hepatology 2006 Dec;44(6):1635-47.

Garcia O, Saveanu C, Cline M, Fromont-Racine M, Jacquier A, Schwikowski B, Aittokallio T, GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring, Bioinformatics 2007 Feb;23(3):394-6.

Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, Chinh NT, Le TA, Acosta CJ, Farrar J, Dougan G, Achtman M, Evolutionary history of Salmonella typhi, Science 2006 Nov;314(5803):1301-4.

Le Roux F, Binesse J, Saulnier D, Mazel D, Construction of a Vibrio splendidus mutant lacking the metalloprotease gene vsm by use of a novel counterselectable suicide vector, Appl. Environ. Microbiol. 2007 Feb;73(3):777-84.

Escudero JA, San Millan A, Catalan A, de la Campa AG, Rivero E, Lopez G, Dominguez L, Moreno MA, Gonzalez-Zorn B, First characterization of fluoroquinolone resistance in Streptococcus suis, Antimicrob. Agents Chemother. 2007 Feb;51(2):777-82.

Rocha EP, Touchon M, Feil EJ, Similar compositional biases are caused by very different mutational effects, Genome Res. 2006 Dec;16(12):1537-47.

Barreiro LB, Quintana-Murci L, DC-SIGNR neck-region polymorphisms and HIV-1 susceptibility: From population stratification to a possible advantage of the 7/5 heterozygous genotype, J. Infect. Dis. 2006 Oct;194(8):1184-5; author reply 1185-7.

Achaz G, Boyer F, Rocha EP, Viari A, Coissac E, Repseek, a tool to retrieve approximate repeats from large DNA sequences, Bioinformatics 2007 Jan;23(1):119-21.

Loot C, Santiago N, Sanz A, Casacuberta JM, The proteins encoded by the pogo-like Lemi1 element bind the TIRs and subterminal repeated motifs of the Arabidopsis Emigrant MITE: consequences for the transposition mechanism of MITEs, Nucleic Acids Res. 2006;34(18):5238-46.

Louvel H, Bommezzadri S, Zidane N, Boursaux-Eude C, Creno S, Magnier A, Rouy Z, Médigue C, Saint Girons I, Bouchier C, Picardeau M, Comparative and functional genomic analyses of iron transport and regulation in Leptospira spp, J. Bacteriol. 2006 Nov;188(22):7893-904.

Hardouin J, Duchateau M, Canelle L, Vlieghe C, Joubert-Caron R, Caron M, Thiophilic adsorption revisited, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007 Jan;845(2):226-31.

Brisse S, Supply P, Brosch R, Vincent V, Gutierrez MC, “A re-evaluation of M. prototuberculosis”: continuing the debate, PLoS Pathog. 2006 Sep;2(9):e95.

Hurst LD, Feil EJ, Rocha EP, Protein evolution: causes of trends in amino-acid gain and loss, Nature 2006 Aug;442(7105):E11-2; discussion E12.

Verdu P, Barreiro LB, Patin E, Gessain A, Cassar O, Kidd JR, Kidd KK, Behar DM, Froment A, Heyer E, Sica L, Casanova JL, Abel L, Quintana-Murci L, Evolutionary insights into the high worldwide prevalence of MBL2 deficiency alleles, Hum. Mol. Genet. 2006 Sep;15(17):2650-8.

Mazel D, Integrons: agents of bacterial evolution, Nat. Rev. Microbiol. 2006 Aug;4(8):608-20.

Brüggemann H, Hagman A, Jules M, Sismeiro O, Dillies MA, Gouyette C, Kunst F, Steinert M, Heuner K, Coppée JY, Buchrieser C, Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila, Cell. Microbiol. 2006 Aug;8(8):1228-40.

Ecker JA, Massire C, Hall TA, Ranken R, Pennella TT, Agasino Ivy C, Blyn LB, Hofstadler SA, Endy TP, Scott PT, Lindler L, Hamilton T, Gaddy C, Snow K, Pe M, Fishbain J, Craft D, Deye G, Riddell S, Milstrey E, Petruccelli B, Brisse S, Harpin V, Schink A, Ecker DJ, Sampath R, Eshoo MW, Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry, J. Clin. Microbiol. 2006 Aug;44(8):2921-32.

Neyrolles O, Gicquel B, Quintana-Murci L, Towards a crucial role for DC-SIGN in tuberculosis and beyond, Trends Microbiol. 2006 Sep;14(9):383-7.

Lebreton A, Saveanu C, Decourty L, Jacquier A, Fromont-Racine M, Nsa2 is an unstable, conserved factor required for the maturation of 27 SB pre-rRNAs, J. Biol. Chem. 2006 Sep;281(37):27099-108.

Patin E, Harmant C, Kidd KK, Kidd J, Froment A, Mehdi SQ, Sica L, Heyer E, Quintana-Murci L, Sub-Saharan African coding sequence variation and haplotype diversity at the NAT2 gene, Hum. Mutat. 2006 Jul;27(7):720.

Iverson-Cabral SL, Astete SG, Cohen CR, Rocha EP, Totten PA, Intrastrain heterogeneity of the mgpB gene in Mycoplasma genitalium is extensive in vitro and in vivo and suggests that variation is generated via recombination with repetitive chromosomal sequences, Infect. Immun. 2006 Jul;74(7):3715-26.

Rocha EP, The quest for the universals of protein evolution, Trends Genet. 2006 Aug;22(8):412-6.

Carré-Mlouka A, Méjean A, Quillardet P, Ashida H, Saito Y, Yokota A, Callebaut I, Sekowska A, Dittmann E, Bouchier C, de Marsac NT, A new rubisco-like protein coexists with a photosynthetic rubisco in the planktonic cyanobacteria Microcystis, J. Biol. Chem. 2006 Aug;281(34):24462-71.

Robert T, Dervins D, Fabre F, Gangloff S, Mrc1 and Srs2 are major actors in the regulation of spontaneous crossover, EMBO J. 2006 Jun;25(12):2837-46.

Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, Lavenir R, Pardigon N, Reynes JM, Pettinelli F, Biscornet L, Diancourt L, Michel S, Duquerroy S, Guigon G, Frenkiel MP, Bréhin AC, Cubito N, Desprès P, Kunst F, Rey FA, Zeller H, Brisse S, Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak, PLoS Med. 2006 Jul;3(7):e263.

Swidan F, Rocha EP, Shmoish M, Pinter RY, An integrative method for accurate comparative genome mapping, PLoS Comput. Biol. 2006 Aug;2(8):e75.

Weber C, Guigon G, Bouchier C, Frangeul L, Moreira S, Sismeiro O, Gouyette C, Mirelman D, Coppee JY, Guillén N, Stress by heat shock induces massive down regulation of genes and allows differential allelic expression of the Gal/GalNAc lectin in Entamoeba histolytica, Eukaryotic Cell 2006 May;5(5):871-5.

Bougnoux ME, Diogo D, François N, Sendid B, Veirmeire S, Colombel JF, Bouchier C, Van Kruiningen H, d'Enfert C, Poulain D, Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract, J. Clin. Microbiol. 2006 May;44(5):1810-20.

Lebreton A, Saveanu C, Decourty L, Rain JC, Jacquier A, Fromont-Racine M, A functional network involved in the recycling of nucleocytoplasmic pre-60S factors, J. Cell Biol. 2006 May;173(3):349-60.

Soler Bistué AJ, Martín FA, Petroni A, Faccone D, Galas M, Tolmasky ME, Zorreguieta A, Vibrio cholerae InV117, a class 1 integron harboring aac(6′)-Ib and blaCTX-M-2, is linked to transposition genes, Antimicrob. Agents Chemother. 2006 May;50(5):1903-7.

MacDonald D, Demarre G, Bouvier M, Mazel D, Gopaul DN, Structural basis for broad DNA-specificity in integron recombination, Nature 2006 Apr;440(7088):1157-62.

Ariey F, Fandeur T, Durand R, Randrianarivelojosia M, Jambou R, Legrand E, Ekala MT, Bouchier C, Cojean S, Duchemin JB, Robert V, Le Bras J, Mercereau-Puijalon O, Invasion of Africa by a single pfcrt allele of South East Asian type, Malar. J. 2006;5:34.

Barreiro LB, Quach H, Krahenbuhl J, Khaliq S, Mohyuddin A, Mehdi SQ, Gicquel B, Neyrolles O, Quintana-Murci L, DC-SIGN interacts with Mycobacterium leprae but sequence variation in this lectin is not associated with leprosy in the Pakistani population, Hum. Immunol. 2006 Jan-Feb;67(1-2):102-7.

Oliveira PH, Batagov A, Ward J, Baganz F, Krabben P, Identification of erythrobactin, a hydroxamate-type siderophore produced by Saccharopolyspora erythraea, Lett. Appl. Microbiol. 2006 Apr;42(4):375-80.

Chaze T, Bouley J, Chambon C, Barboiron C, Picard B, Mapping of alkaline proteins in bovine skeletal muscle, Proteomics 2006 Apr;6(8):2571-5.

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Brisse S, Cordevant C, Vandamme P, Bidet P, Loukil C, Chabanon G, Lange M, Bingen E, Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis, J. Clin. Microbiol. 2004 Oct;42(10):4824-7.

Brisse S, van Himbergen T, Kusters K, Verhoef J, Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates, Clin. Microbiol. Infect. 2004 Oct;10(10):942-5.

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Krausz C, Quintana-Murci L, Forti G, Y chromosome polymorphisms in medicine, Ann. Med. 2004;36(8):573-83.

Jonas D, Spitzmüller B, Daschner FD, Verhoef J, Brisse S, Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism, Res. Microbiol. 2004 Jan-Feb;155(1):17-23.

Loot C, Turlan C, Chandler M, Host processing of branched DNA intermediates is involved in targeted transposition of IS911, Mol. Microbiol. 2004 Jan;51(2):385-93.

Koszul R, Caburet S, Dujon B, Fischer G, Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments, EMBO J. 2004 Jan;23(1):234-43.

Forissier JF, Bonne G, Bouchier C, Duboscq-Bidot L, Richard P, Wisnewski C, Briault S, Moraine C, Dubourg O, Schwartz K, Komajda M, Apical left ventricular aneurysm without atrio-ventricular block due to a lamin A/C gene mutation, Eur. J. Heart Fail. 2003 Dec;5(6):821-5.

Rocha EP, Danchin A, Gene essentiality determines chromosome organisation in bacteria, Nucleic Acids Res. 2003 Nov;31(22):6570-7.

Bougnoux ME, Tavanti A, Bouchier C, Gow NA, Magnier A, Davidson AD, Maiden MC, D'Enfert C, Odds FC, Collaborative consensus for optimized multilocus sequence typing of Candida albicans, J. Clin. Microbiol. 2003 Nov;41(11):5265-6.

Rocha EP, DNA repeats lead to the accelerated loss of gene order in bacteria, Trends Genet. 2003 Nov;19(11):600-3.

Onteniente L, Brisse S, Tassios PT, Vergnaud G, Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing, J. Clin. Microbiol. 2003 Nov;41(11):4991-7.

Mashimo T, Glaser P, Lucas M, Simon-Chazottes D, Ceccaldi PE, Montagutelli X, Desprès P, Guénet JL, Structural and functional genomics and evolutionary relationships in the cluster of genes encoding murine 2′,5′-oligoadenylate synthetases, Genomics 2003 Nov;82(5):537-52.

Rocha EP, Danchin A, An analysis of determinants of amino acids substitution rates in bacterial proteins, Mol. Biol. Evol. 2004 Jan;21(1):108-16.

Biskri L, Mazel D, Erythromycin esterase gene ere(A) is located in a functional gene cassette in an unusual class 2 integron, Antimicrob. Agents Chemother. 2003 Oct;47(10):3326-31.

de Lahondès R, Ribes V, Arcangioli B, Fission yeast Sap1 protein is essential for chromosome stability, Eukaryotic Cell 2003 Oct;2(5):910-21.

Zei G, Lisa A, Fiorani O, Magri C, Quintana-Murci L, Semino O, Santachiara-Benerecetti AS, From surnames to the history of Y chromosomes: the Sardinian population as a paradigm, Eur. J. Hum. Genet. 2003 Oct;11(10):802-7.

Kovtunovych G, Lytvynenko T, Negrutska V, Lar O, Brisse S, Kozyrovska N, Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene, Res. Microbiol. 2003 Oct;154(8):587-92.

Janvier M, Regnault B, Grimont P, Development and use of fluorescent 16S rRNA-targeted probes for the specific detection of Methylophaga species by in situ hybridization in marine sediments, Res. Microbiol. 2003 Sep;154(7):483-90.

Meister P, Poidevin M, Francesconi S, Tratner I, Zarzov P, Baldacci G, Nuclear factories for signalling and repairing DNA double strand breaks in living fission yeast, Nucleic Acids Res. 2003 Sep;31(17):5064-73.

Fromont-Racine M, Senger B, Saveanu C, Fasiolo F, Ribosome assembly in eukaryotes, Gene 2003 Aug;313:17-42.

van Westreenen M, Paauw A, Fluit AC, Brisse S, van Dijk W, Verhoef J, Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao, J. Antimicrob. Chemother. 2003 Sep;52(3):530-2.

Sielaff H, Dittmann E, Tandeau De Marsac N, Bouchier C, Von Döhren H, Börner T, Schwecke T, The mcyF gene of the microcystin biosynthetic gene cluster from Microcystis aeruginosa encodes an aspartate racemase, Biochem. J. 2003 Aug;373(Pt 3):909-16.

Sébillon P, Bouchier C, Bidot LD, Bonne G, Ahamed K, Charron P, Drouin-Garraud V, Millaire A, Desrumeaux G, Benaïche A, Charniot JC, Schwartz K, Villard E, Komajda M, Expanding the phenotype of LMNA mutations in dilated cardiomyopathy and functional consequences of these mutations, J. Med. Genet. 2003 Aug;40(8):560-7.

Desnoues N, Lin M, Guo X, Ma L, Carreño-Lopez R, Elmerich C, Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice, Microbiology (Reading, Engl.) 2003 Aug;149(Pt 8):2251-62.

Achaz G, Coissac E, Netter P, Rocha EP, Associations between inverted repeats and the structural evolution of bacterial genomes, Genetics 2003 Aug;164(4):1279-89.

Rocha EP, Fralick J, Vediyappan G, Danchin A, Norris V, A strand-specific model for chromosome segregation in bacteria, Mol. Microbiol. 2003 Aug;49(4):895-903.

Rocha EP, Danchin A, Essentiality, not expressiveness, drives gene-strand bias in bacteria, Nat. Genet. 2003 Aug;34(4):377-8.

Sylvius N, Duboscq-Bidot L, Bouchier C, Charron P, Benaiche A, Sébillon P, Komajda M, Villard E, Mutational analysis of the beta- and delta-sarcoglycan genes in a large number of patients with familial and sporadic dilated cardiomyopathy, Am. J. Med. Genet. A 2003 Jul;120A(1):8-12.

Guillemin I, Bouchier C, Garrigues T, Wisner A, Choumet V, Sequences and structural organization of phospholipase A2 genes from Vipera aspis aspis, V. aspis zinnikeri and Vipera berus berus venom. Identification of the origin of a new viper population based on ammodytin I1 heterogeneity, Eur. J. Biochem. 2003 Jul;270(13):2697-706.

McElreavey K, Quintana-Murci L, Male reproductive function and the human Y chromosome: is selection acting on the Y?, Reprod. Biomed. Online 2003 Jul-Aug;7(1):17-23.

Badis G, Fromont-Racine M, Jacquier A, A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast, RNA 2003 Jul;9(7):771-9.

Saveanu C, Namane A, Gleizes PE, Lebreton A, Rousselle JC, Noaillac-Depeyre J, Gas N, Jacquier A, Fromont-Racine M, Sequential protein association with nascent 60S ribosomal particles, Mol. Cell. Biol. 2003 Jul;23(13):4449-60.

Smeets MF, Francesconi S, Baldacci G, High dosage Rhp51 suppression of the MMS sensitivity of DNA structure checkpoint mutants reveals a relationship between Crb2 and Rhp51, Genes Cells 2003 Jul;8(7):573-86.

Baroud CN, Okkels F, Ménétrier L, Tabeling P, Reaction-diffusion dynamics: confrontation between theory and experiment in a microfluidic reactor, Phys Rev E Stat Nonlin Soft Matter Phys 2003 Jun;67(6 Pt 1):060104.

Quintana-Murci L, Veitia R, Fellous M, Semino O, Poloni ES, Genetic structure of Mediterranean populations revealed by Y-chromosome haplotype analysis, Am. J. Phys. Anthropol. 2003 Jun;121(2):157-71.

Lucas M, Mashimo T, Frenkiel MP, Simon-Chazottes D, Montagutelli X, Ceccaldi PE, Guénet JL, Desprès P, Infection of mouse neurones by West Nile virus is modulated by the interferon-inducible 2′-5′ oligoadenylate synthetase 1b protein, Immunol. Cell Biol. 2003 Jun;81(3):230-6.

Rocha EP, An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction, Genome Res. 2003 Jun;13(6A):1123-32.

Charniot JC, Pascal C, Bouchier C, Sébillon P, Salama J, Duboscq-Bidot L, Peuchmaurd M, Desnos M, Artigou JY, Komajda M, Functional consequences of an LMNA mutation associated with a new cardiac and non-cardiac phenotype, Hum. Mutat. 2003 May;21(5):473-81.

Kljuic A, Bazzi H, Sundberg JP, Martinez-Mir A, O'Shaughnessy R, Mahoney MG, Levy M, Montagutelli X, Ahmad W, Aita VM, Gordon D, Uitto J, Whiting D, Ott J, Fischer S, Gilliam TC, Jahoda CA, Morris RJ, Panteleyev AA, Nguyen VT, Christiano AM, , Desmoglein 4 in hair follicle differentiation and epidermal adhesion: evidence from inherited hypotrichosis and acquired pemphigus vulgaris., Cell 2003 Apr; 113(2): 249-60.

Milohanic E, Glaser P, Coppée JY, Frangeul L, Vega Y, Vázquez-Boland JA, Kunst F, Cossart P, Buchrieser C, Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA, Mol. Microbiol. 2003 Mar;47(6):1613-25.

Rowe-Magnus DA, Guerout AM, Biskri L, Bouige P, Mazel D, Comparative analysis of superintegrons: engineering extensive genetic diversity in the Vibrionaceae, Genome Res. 2003 Mar;13(3):428-42.

Kanoh J, Francesconi S, Collura A, Schramke V, Ishikawa F, Baldacci G, Géli V, The fission yeast spSet1p is a histone H3-K4 methyltransferase that functions in telomere maintenance and DNA repair in an ATM kinase Rad3-dependent pathway, J. Mol. Biol. 2003 Feb;326(4):1081-94.

Barnabe C, Brisse S, Tibayrenc M, Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses, Infect. Genet. Evol. 2003 Feb;2(3):201-8.

Brisse S, Henriksson J, Barnabé C, Douzery EJ, Berkvens D, Serrano M, De Carvalho MR, Buck GA, Dujardin JC, Tibayrenc M, Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype, Infect. Genet. Evol. 2003 Feb;2(3):173-83.

Koszul R, Malpertuy A, Frangeul L, Bouchier C, Wincker P, Thierry A, Duthoy S, Ferris S, Hennequin C, Dujon B, The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata, FEBS Lett. 2003 Jan;534(1-3):39-48.

McElreavey K, Quintana-Murci L, Y chromosome haplogroups: a correlation with testicular dysgenesis syndrome?, APMIS 2003 Jan;111(1):106-13; discussion 114.

Fabre F, Chan A, Heyer WD, Gangloff S, Alternate pathways involving Sgs1/Top3, Mus81/ Mms4, and Srs2 prevent formation of toxic recombination intermediates from single-stranded gaps created by DNA replication, Proc. Natl. Acad. Sci. U.S.A. 2002 Dec;99(26):16887-92.

Pulkkinen L, Choi YW, Simpson A, Montagutelli X, Sundberg J, Uitto J, Mahoney MG, , Loss of cell adhesion in Dsg3bal-Pas mice with homozygous deletion mutation (2079del14) in the desmoglein 3 gene., J. Invest. Dermatol. 2002 Dec; 119(6): 1237-43.

Wielders CL, Fluit AC, Brisse S, Verhoef J, Schmitz FJ, mecA gene is widely disseminated in Staphylococcus aureus population, J. Clin. Microbiol. 2002 Nov;40(11):3970-5.

Patsalis PC, Sismani C, Quintana-Murci L, Taleb-Bekkouche F, Krausz C, McElreavey K, Effects of transmission of Y chromosome AZFc deletions, Lancet 2002 Oct;360(9341):1222-4.

Bandelt HJ, Quintana-Murci L, Salas A, Macaulay V, The fingerprint of phantom mutations in mitochondrial DNA data, Am. J. Hum. Genet. 2002 Nov;71(5):1150-60.

Rocha EP, Pradillon O, Bui H, Sayada C, Denamur E, A new family of highly variable proteins in the Chlamydophila pneumoniae genome, Nucleic Acids Res. 2002 Oct;30(20):4351-60.

Manni F, Leonardi P, Barakat A, Rouba H, Heyer E, Klintschar M, McElreavey K, Quintana-Murci L, Y-chromosome analysis in Egypt suggests a genetic regional continuity in Northeastern Africa, Hum. Biol. 2002 Oct;74(5):645-58.

Leverstein-van Hall MA, Fluit AC, Paauw A, Box AT, Brisse S, Verhoef J, Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp, J. Clin. Microbiol. 2002 Oct;40(10):3703-11.

Rocha E, Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?, Trends Microbiol. 2002 Sep;10(9):393-5.

Mashimo T, Lucas M, Simon-Chazottes D, Frenkiel MP, Montagutelli X, Ceccaldi PE, Deubel V, Guenet JL, Despres P, A nonsense mutation in the gene encoding 2′-5′-oligoadenylate synthetase/L1 isoform is associated with West Nile virus susceptibility in laboratory mice, Proc. Natl. Acad. Sci. U.S.A. 2002 Aug;99(17):11311-6.

Loot C, Turlan C, Rousseau P, Ton-Hoang B, Chandler M, A target specificity switch in IS911 transposition: the role of the OrfA protein, EMBO J. 2002 Aug;21(15):4172-82.

Shor E, Gangloff S, Wagner M, Weinstein J, Price G, Rothstein R, Mutations in homologous recombination genes rescue top3 slow growth in Saccharomyces cerevisiae, Genetics 2002 Oct;162(2):647-62.

Rowe-Magnus DA, Mazel D, The role of integrons in antibiotic resistance gene capture, Int. J. Med. Microbiol. 2002 Jul;292(2):115-25.

Achaz G, Rocha EP, Netter P, Coissac E, Origin and fate of repeats in bacteria, Nucleic Acids Res. 2002 Jul;30(13):2987-94.

Francesconi S, Smeets M, Grenon M, Tillit J, Blaisonneau J, Baldacci G, Fission yeast chk1 mutants show distinct responses to different types of DNA damaging treatments, Genes Cells 2002 Jul;7(7):663-73.

Rocha EP, Danchin A, Base composition bias might result from competition for metabolic resources, Trends Genet. 2002 Jun;18(6):291-4.

van Dessel H, Kamp-Hopmans TE, Fluit AC, Brisse S, de Smet AM, Dijkshoorn L, Troelstra A, Verhoef J, Mascini EM, Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit, J. Hosp. Infect. 2002 Jun;51(2):89-95.

Brisse S, Fussing V, Ridwan B, Verhoef J, Willems RJ, Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates, J. Clin. Microbiol. 2002 Jun;40(6):1977-84.

Rocha EP, Blanchard A, Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution, Nucleic Acids Res. 2002 May;30(9):2031-42.

Rocha EP, Matic I, Taddei F, Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?, Nucleic Acids Res. 2002 May;30(9):1886-94.

Brisse S, Stefani S, Verhoef J, Van Belkum A, Vandamme P, Goessens W, Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex, J. Clin. Microbiol. 2002 May;40(5):1743-8.

Amrani YM, Voegtlé D, Montagutelli X, Cazenave PA, Six A, The Ig light chain restricted B6.kappa(-)lambda(SEG) mouse strain suggests that the IGL locus genomic organization is subject to constant evolution, Immunogenetics 2002 May;54(2):106-19.

Feuerbach F, Galy V, Trelles-Sticken E, Fromont-Racine M, Jacquier A, Gilson E, Olivo-Marin JC, Scherthan H, Nehrbass U, Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast, Nat. Cell Biol. 2002 Mar;4(3):214-21.

Rowe-Magnus DA, Guerout AM, Mazel D, Bacterial resistance evolution by recruitment of super-integron gene cassettes, Mol. Microbiol. 2002 Mar;43(6):1657-69.

Le Masson I, Saveanu C, Chevalier A, Namane A, Gobin R, Fromont-Racine M, Jacquier A, Mann C, Spc24 interacts with Mps2 and is required for chromosome segregation, but is not implicated in spindle pole body duplication, Mol. Microbiol. 2002 Mar;43(6):1431-43.

Henriksson J, Dujardin JC, Barnabé C, Brisse S, Timperman G, Venegas J, Pettersson U, Tibayrenc M, Solari A, Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative, Parasitology 2002 Mar;124(Pt 3):277-86.

Baroud CN, Plapp BB, She ZS, Swinney HL, Anomalous self-similarity in a turbulent rapidly rotating fluid, Phys. Rev. Lett. 2002 Mar;88(11):114501.

Fromont-Racine M, Rain JC, Legrain P, Building protein-protein networks by two-hybrid mating strategy, Meth. Enzymol. 2002;350:513-24.

Hetet G, Grandchamp B, Bouchier C, Nicaud V, Tiret L, Roizès G, Desnos M, Schwartz K, Dorent R, Komajda M, , Idiopathic dilated cardiomyopathy: lack of association with haemochromatosis gene in the CARDIGENE study, Heart 2001 Dec;86(6):702-3.

Schaper S, Fromont-Racine M, Linder P, de la Cruz J, Namane A, Yaniv M, A yeast homolog of chromatin assembly factor 1 is involved in early ribosome assembly, Curr. Biol. 2001 Nov;11(23):1885-90.

Saveanu C, Bienvenu D, Namane A, Gleizes PE, Gas N, Jacquier A, Fromont-Racine M, Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps, EMBO J. 2001 Nov;20(22):6475-84.

Rocha EP, Danchin A, Ongoing evolution of strand composition in bacterial genomes, Mol. Biol. Evol. 2001 Sep;18(9):1789-99.

Brisse S, Verhoef J, Tibayrenc M, Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages, Int. J. Parasitol. 2001 Sep;31(11):1218-26.

Fitch W, Brisse S, Stevens J, Tibayrenc M, Infectious diseases and the golden age of phylogenetics: an E-debate, Infect. Genet. Evol. 2001 Jul;1(1):69-74.

Rocha EP, Danchin A, Viari A, Evolutionary role of restriction/modification systems as revealed by comparative genome analysis, Genome Res. 2001 Jun;11(6):946-58.

Wielders CL, Vriens MR, Brisse S, de Graaf-Miltenburg LA, Troelstra A, Fleer A, Schmitz FJ, Verhoef J, Fluit AC, In-vivo transfer of mecA DNA to Staphylococcus aureus [corrected], Lancet 2001 May;357(9269):1674-5.

Chambaud I, Heilig R, Ferris S, Barbe V, Samson D, Galisson F, Moszer I, Dybvig K, Wróblewski H, Viari A, Rocha EP, Blanchard A, The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis, Nucleic Acids Res. 2001 May;29(10):2145-53.

Brisse S, Verhoef J, Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping, Int. J. Syst. Evol. Microbiol. 2001 May;51(Pt 3):915-24.

Garapin A, Ma L, Pescher P, Lagranderie M, Marchal G, Mixed immune response induced in rodents by two naked DNA genes coding for mycobacterial glycosylated proteins, Vaccine 2001 Apr;19(20-22):2830-41.

Lefort J, Motreff L, Vargaftig BB, , Airway administration of Escherichia coli endotoxin to mice induces glucocorticosteroid-resistant bronchoconstriction and vasopermeation., Am J Respir Cell Mol Biol 2001 Mar; 24(3): 345-51.

Saveanu C, Fromont-Racine M, Harington A, Ricard F, Namane A, Jacquier A, Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues, J. Biol. Chem. 2001 May;276(19):15861-7.

Hennequin C, Thierry A, Richard GF, Lecointre G, Nguyen HV, Gaillardin C, Dujon B, Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains, J. Clin. Microbiol. 2001 Feb;39(2):551-9.

Urdaci MC, Regnault B, Grimont PA, Identification by in situ hybridization of segmented filamentous bacteria in the intestine of diarrheic rainbow trout (Oncorhynchus mykiss), Res. Microbiol. 2001 Jan-Feb;152(1):67-73.

Quintana-Murci L, Fellous M, The Human Y Chromosome: The Biological Role of a “Functional Wasteland”, J. Biomed. Biotechnol. 2001;1(1):18-24.

Sylvius N, Tesson F, Gayet C, Charron P, Bénaïche A, Peuchmaurd M, Duboscq-Bidot L, Feingold J, Beckmann JS, Bouchier C, Komajda M, A new locus for autosomal dominant dilated cardiomyopathy identified on chromosome 6q12-q16, Am. J. Hum. Genet. 2001 Jan;68(1):241-6.

Tesson F, Sylvius N, Pilotto A, Dubosq-Bidot L, Peuchmaurd M, Bouchier C, Benaiche A, Mangin L, Charron P, Gavazzi A, Tavazzi L, Arbustini E, Komajda M, Epidemiology of desmin and cardiac actin gene mutations in a european population of dilated cardiomyopathy, Eur. Heart J. 2000 Nov;21(22):1872-6.

Villarino A, Bouvet OM, Regnault B, Martin-Delautre S, Grimont PAD , Exploring the frontier between life and death in Escherichia coli: evaluation of different viability markers in live and heat- or UV-killed cells, Res. Microbiol. 2000 Nov;151(9):755-68.

Brisse S, Dujardin JC, Tibayrenc M, Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers, Mol. Biochem. Parasitol. 2000 Nov;111(1):95-105.

Wolf B, Rey LC, Brisse S, Moreira LB, Milatovic D, Fleer A, Roord JJ, Verhoef J, Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil, J. Antimicrob. Chemother. 2000 Nov;46(5):757-65.

Montagutelli X, , Effect of the genetic background on the phenotype of mouse mutations., J. Am. Soc. Nephrol. 2000 Nov; 11 Suppl 16(): S101-5.

Brisse S, Milatovic D, Fluit AC, Kusters K, Toelstra A, Verhoef J, Schmitz FJ, Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping, J. Clin. Microbiol. 2000 Oct;38(10):3636-45.

Regnault B, Martin-Delautre S, Lejay-Collin M, Lefèvre M, Grimont PA, Oligonucleotide probe for the visualization of Escherichia coli/Escherichia fergusonii cells by in situ hybridization: specificity and potential applications, Res. Microbiol. 2000 Sep;151(7):521-33.

Schlegel L, Grimont F, Collins MD, Régnault B, Grimont PA, Bouvet A, Streptococcus infantarius sp. nov., Streptococcus infantarius subsp. infantarius subsp. nov. and Streptococcus infantarius subsp. coli subsp. nov., isolated from humans and food, Int. J. Syst. Evol. Microbiol. 2000 Jul;50 Pt 4:1425-34.

Rocha EP, Danchin A, Viari A, The DB case: pattern matching evidence is not significant, Mol. Microbiol. 2000 Jul;37(1):216-8.

Dujardin JC, Henriksson J, Victoir K, Brisse S, Gamboa D, Arevalo J, Le Ray D, Genomic rearrangements in trypanosomatids: an alternative to the “one gene” evolutionary hypotheses?, Mem. Inst. Oswaldo Cruz 2000 Jul-Aug;95(4):527-34.

Schmitz FJ, Fluit AC, Milatovic D, Verhoef J, Heinz HP, Brisse S, In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus, J. Antimicrob. Chemother. 2000 Jul;46(1):109-13.

Fontanellas A, Mazurier F, Landry M, Taine L, Morel C, Larou M, Daniel JY, Montagutelli X, de Salamanca RE, de Verneuil H, , Reversion of hepatobiliary alterations By bone marrow transplantation in a murine model of erythropoietic protoporphyria., Hepatology 2000 Jul; 32(1): 73-81.

Rocha EP, Sekowska A, Danchin A, Sulphur islands in the Escherichia coli genome: markers of the cell’s architecture?, FEBS Lett. 2000 Jun;476(1-2):8-11.

Gangloff S, Soustelle C, Fabre F, Homologous recombination is responsible for cell death in the absence of the Sgs1 and Srs2 helicases, Nat. Genet. 2000 Jun;25(2):192-4.

Sundberg JP, Boggess D, Bascom C, Limberg BJ, Shultz LD, Sundberg BA, King LE, Montagutelli X, , Lanceolate hair-J (lahJ): a mouse model for human hair disorders., Exp. Dermatol. 2000 Jun; 9(3): 206-18.

Barnabé C, Brisse S, Tibayrenc M, Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach, Parasitology 2000 May;120 ( Pt 5):513-26.

Brisse S, Verduin CM, Milatovic D, Fluit A, Verhoef J, Laevens S, Vandamme P, Tümmler B, Verbrugh HA, van Belkum A, Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping, J. Clin. Microbiol. 2000 May;38(5):1876-84.

Regnault B, Martin-Delautre S, Grimont PA, Problems associated with the direct viable count procedure applied to gram-positive bacteria, Int. J. Food Microbiol. 2000 Apr;55(1-3):281-4.

Villarino A, Bouvet O, Regnault B, Delautre S, Grimont PA, Cellular activities in ultra-violet killed Escherichia coli, Int. J. Food Microbiol. 2000 Apr;55(1-3):245-7.

Milatovic D, Schmitz FJ, Brisse S, Verhoef J, Fluit AC, In vitro activities of sitafloxacin (DU-6859a) and six other fluoroquinolones against 8,796 clinical bacterial isolates, Antimicrob. Agents Chemother. 2000 Apr;44(4):1102-7.

Rocha EP, Guerdoux-Jamet P, Moszer I, Viari A, Danchin A, Implication of gene distribution in the bacterial chromosome for the bacterial cell factory, J. Biotechnol. 2000 Mar;78(3):209-19.

Jagla B, Schuchhardt J, Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites, Bioinformatics 2000 Mar;16(3):245-50.

Brisse S, Milatovic D, Fluit AC, Verhoef J, Schmitz FJ, Epidemiology of quinolone resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe, Eur. J. Clin. Microbiol. Infect. Dis. 2000 Jan;19(1):64-8.

Brisse S, Barnabé C, Tibayrenc M, Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis, Int. J. Parasitol. 2000 Jan;30(1):35-44.

Rothstein R, Michel B, Gangloff S, Replication fork pausing and recombination or “gimme a break”, Genes Dev. 2000 Jan;14(1):1-10.

Willig TN, Draptchinskaia N, Dianzani I, Ball S, Niemeyer C, Ramenghi U, Orfali K, Gustavsson P, Garelli E, Brusco A, Tiemann C, Pérignon JL, Bouchier C, Cicchiello L, Dahl N, Mohandas N, Tchernia G, Mutations in ribosomal protein S19 gene and diamond blackfan anemia: wide variations in phenotypic expression, Blood 1999 Dec;94(12):4294-306.

Schmitz FJ, Fluit AC, Brisse S, Verhoef J, Köhrer K, Milatovic D, Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates, FEMS Immunol. Med. Microbiol. 1999 Dec;26(3-4):281-7.

Rocha EP, Danchin A, Viari A, Functional and evolutionary roles of long repeats in prokaryotes, Res. Microbiol. 1999 Nov-Dec;150(9-10):725-33.

Richard GF, Hennequin C, Thierry A, Dujon B, Trinucleotide repeats and other microsatellites in yeasts, Res. Microbiol. 1999 Nov-Dec;150(9-10):589-602.

Moszer I, Rocha EP, Danchin A, Codon usage and lateral gene transfer in Bacillus subtilis, Curr. Opin. Microbiol. 1999 Oct;2(5):524-8.

Brisse S, Fluit AC, Wagner U, Heisig P, Milatovic D, Verhoef J, Scheuring S, Köhrer K, Schmitz FJ, Association of alterations in ParC and GyrA proteins with resistance of clinical isolates of Enterococcus faecium to nine different fluoroquinolones, Antimicrob. Agents Chemother. 1999 Oct;43(10):2513-6.

Rocha EP, Danchin A, Viari A, Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes, Mol. Biol. Evol. 1999 Sep;16(9):1219-30.

Rocha EP, Danchin A, Viari A, Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis, Nucleic Acids Res. 1999 Sep;27(17):3567-76.

Rocha EP, Danchin A, Viari A, Bacterial DNA strand compositional asymmetry: response, Trends Microbiol. 1999 Aug;7(8):308.

Brisse S, Milatovic D, Fluit AC, Verhoef J, Martin N, Scheuring S, Köhrer K, Schmitz FJ, Comparative in vitro activities of ciprofloxacin, clinafloxacin, gatifloxacin, levofloxacin, moxifloxacin, and trovafloxacin against Klebsiella pneumoniae, Klebsiella oxytoca, Enterobacter cloacae, and Enterobacter aerogenes clinical isolates with alterations in GyrA and ParC proteins, Antimicrob. Agents Chemother. 1999 Aug;43(8):2051-5.

Autiero M, Culerrier R, Bouchier C, Basmaciogullari S, Gaubin M, El Marhomy S, Blanchet P, Paradis V, Jardin A, Guardiola J, Piatier-Tonneau D, Abnormal restriction pattern of PIP gene associated with human primary prostate cancers, DNA Cell Biol. 1999 Jun;18(6):481-7.

Rothstein R, Gangloff S, The shuffling of a mortal coil, Nat. Genet. 1999 May;22(1):4-6.

Rocha EP, Danchin A, Viari A, Universal replication biases in bacteria, Mol. Microbiol. 1999 Apr;32(1):11-6.

Gangloff S, de Massy B, Arthur L, Rothstein R, Fabre F, The essential role of yeast topoisomerase III in meiosis depends on recombination, EMBO J. 1999 Mar;18(6):1701-11.

Bañuls AL, Brisse S, Sidibé I, Noël S, Tibayrenc M, A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain, Folia Parasitol. 1999;46(1):10-4.

Grenon M, Tillit J, Piard K, Baldacci G, Francesconi S, The S/M checkpoint at 37 degrees C and the recovery of viability of the mutant poldeltats3 require the crb2+/rhp9+ gene in fission yeast, Mol. Gen. Genet. 1999 Jan;260(6):522-34.

Manning K, Fernández-Cañón JM, Montagutelli X, Grompe M, , Identification of the mutation in the alkaptonuria mouse model. Mutations in brief no. 216. Online., Hum. Mutat. 1999 ; 13(2): 171.

Kress W, Schmidt SR, Halliger-Keller B, Montagutelli X, Müller CR, , The genetic defect of the alkaptonuric mouse (aku)., Mamm. Genome 1999 Jan; 10(1): 68-70.

Hillebrandt S, Streffer C, Montagutelli X, Balling R, , A locus for radiation-induced gastroschisis on mouse Chromosome 7., Mamm. Genome 1998 Dec; 9(12): 995-7.

Santiago ML, Mary C, Parzy D, Jacquet C, Montagutelli X, Parkhouse RM, Lemoine R, Izui S, Reininger L, , Linkage of a major quantitative trait locus to Yaa gene-induced lupus-like nephritis in (NZW x C57BL/6)F1 mice., Eur. J. Immunol. 1998 12; 28(12): 4257-67.

Fairhead C, Thierry A, Denis F, Eck M, Dujon B, ‘Mass-murder’ of ORFs from three regions of chromosome XI from Saccharomyces cerevisiae, Gene 1998 Nov;223(1-2):33-46.

Perderiset M, Maga G, Piard K, Francesconi S, Tratner I, Hübscher U, Baldacci G, Mutant DNA polymerase delta from thermosensitive Schizosaccharomyces pombe strains display reduced stimulation by proliferating cell nuclear antigen, Biochem. J. 1998 Nov;335 ( Pt 3):581-8.

Cornélis F, Fauré S, Martinez M, Prud'homme JF, Fritz P, Dib C, Alves H, Barrera P, de Vries N, Balsa A, Pascual-Salcedo D, Maenaut K, Westhovens R, Migliorini P, Tran TH, Delaye A, Prince N, Lefevre C, Thomas G, Poirier M, Soubigou S, Alibert O, Lasbleiz S, Fouix S, Bouchier C, Lioté F, Loste MN, Lepage V, Charron D, Gyapay G, Lopes-Vaz A, Kuntz D, Bardin T, Weissenbach J, , New susceptibility locus for rheumatoid arthritis suggested by a genome-wide linkage study, Proc. Natl. Acad. Sci. U.S.A. 1998 Sep;95(18):10746-50.

Colnot C, Ripoche MA, Milon G, Montagutelli X, Crocker PR, Poirier F, , Maintenance of granulocyte numbers during acute peritonitis is defective in galectin-3-null mutant mice., Immunology 1998 Jul; 94(3): 290-6.

Rocha EP, Viari A, Danchin A, Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons, Nucleic Acids Res. 1998 Jun;26(12):2971-80.

Brisse S, Barnabé C, Tibayrenc M, Trypanosoma cruzi: How Many Relevant Phylogenetic Subdivisions are There?, Parasitol. Today (Regul. Ed.) 1998 May;14(5):178-9.

Brisse S, Barnabé C, Bañuls AL, Sidibé I, Noël S, Tibayrenc M, A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting, Mol. Biochem. Parasitol. 1998 May;92(2):253-63.

Tettelin H, Thierry A, Goffeau A, Dujon B, Physical mapping of chromosomes VII and XV of Saccharomyces cerevisiae at 3.5 kb average resolution to allow their complete sequencing, Yeast 1998 May;14(7):601-16.

Rhodes M, Straw R, Fernando S, Evans A, Lacey T, Dearlove A, Greystrong J, Walker J, Watson P, Weston P, Kelly M, Taylor D, Gibson K, Mundy C, Bourgade F, Poirier C, Simon D, Brunialti AL, Montagutelli X, Gu'enet JL, Haynes A, Brown SD, , A high-resolution microsatellite map of the mouse genome., Genome Res. 1998 May; 8(5): 531-42.

Regnault B, Grimont F, Grimont PA, Universal ribotyping method using a chemically labelled oligonucleotide probe mixture, Res. Microbiol. 1997 Nov;148(8):649-59.

Montagutelli X, Lalouette A, Boulouis HJ, Guénet JL, Sundberg JP, , Vesicle formation and follicular root sheath separation in mice homozygous for deleterious alleles at the balding (bal) locus., J. Invest. Dermatol. 1997 Sep; 109(3): 324-8.

Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, Backes U, Barreiros T, Bertani I, Bjourson AJ, Brückner M, Bruschi CV, Carignani G, Castagnoli L, Cerdan E, Clemente ML, Coblenz A, Coglievina M, Coissac E, Defoor E, Del Bino S, Delius H, Delneri D, de Wergifosse P, Dujon B, Kleine K, The nucleotide sequence of Saccharomyces cerevisiae chromosome VII, Nature 1997 May;387(6632 Suppl):81-4.

Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, Arino J, Benes V, Bohn C, Bolotin-Fukuhara M, Bordonné R, Boyer J, Camasses A, Casamayor A, Casas C, Chéret G, Cziepluch C, Daignan-Fornier B, Dang DV, de Haan M, Delius H, Durand P, Fairhead C, Feldmann H, Gaillon L, Kleine K, The nucleotide sequence of Saccharomyces cerevisiae chromosome XV, Nature 1997 May;387(6632 Suppl):98-102.

Francesconi S, Grenon M, Bouvier D, Baldacci G, p56(chk1) protein kinase is required for the DNA replication checkpoint at 37 degrees C in fission yeast, EMBO J. 1997 Mar;16(6):1332-41.

Montagutelli X, Guénet JL, , [Animal models of hereditary diseases]., Rev Prat 1997 Jan; 47(2): 162-8.

Autiero M, Bouchier C, Basmaciogullari S, Zaborski P, el Marhomy S, Martin M, Guardiola J, Piatier-Tonneau D, Isolation from a human seminal vesicle library of the cDNA for gp17, a CD4 binding factor, Immunogenetics 1997;46(4):345-8.

Bouvet A, Grimont F, Collins MD, Benaoudia F, Devine C, Regnault B, Grimont PA, Streptococcus infantarius sp. nov. related to Streptococcus bovis and Streptococcus equinus, Adv. Exp. Med. Biol. 1997;418:393-5.

Lalouette A, Lablack A, Guenet JL, Montagutelli X, Segretain D, , Male sterility caused by sperm cell-specific structural abnormalities in ebouriffé, a new mutation of the house mouse., Biol. Reprod. 1996 Aug; 55(2): 355-63.

Montagutelli X, Turner R, Nadeau JH, , Epistatic control of non-Mendelian inheritance in mouse interspecific crosses., Genetics 1996 Aug; 143(4): 1739-52.

Montagutelli X, Hogan ME, Aubin G, Lalouette A, Guénet JL, King LE, Sundberg JP, , Lanceolate hair (lah): a recessive mouse mutation with alopecia and abnormal hair., J. Invest. Dermatol. 1996 Jul; 107(1): 20-5.

Gangloff S, Zou H, Rothstein R, Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast, EMBO J. 1996 Apr;15(7):1715-25.

Choumet V, Bouchier C, Délot E, Faure G, Saliou B, Bon C, Structure and function relationship of crotoxin, a heterodimeric neurotoxic phospholipase A2 from the venom of a South-American rattlesnake, Adv. Exp. Med. Biol. 1996;391:197-202.

Rothstein R, Gangloff S, Hyper-recombination and Bloom’s syndrome: microbes again provide clues about cancer, Genome Res. 1995 Dec;5(5):421-6.

Sundberg JP, Boggess D, Montagutelli X, Hogan ME, King LE, , C3H/HeJ mouse model for alopecia areata., J. Invest. Dermatol. 1995 May; 104(5 Suppl): 16S-17S.

Deltour L, Montagutelli X, Guenet JL, Jami J, Páldi A, , Tissue- and developmental stage-specific imprinting of the mouse proinsulin gene, Ins2., Dev. Biol. 1995 Apr; 168(2): 686-8.

Francesconi S, De Recondo AM, Baldacci G, DNA polymerase delta is required for the replication feedback control of cell cycle progression in Schizosaccharomyces pombe, Mol. Gen. Genet. 1995 Mar;246(5):561-9.

Auffray C, Behar G, Bois F, Bouchier C, Da Silva C, Devignes MD, Duprat S, Houlgatte R, Jumeau MN, Lamy B, [IMAGE: molecular integration of the analysis of the human genome and its expression], C. R. Acad. Sci. III, Sci. Vie 1995 Feb;318(2):263-72.

Thierry A, Gaillon L, Galibert F, Dujon B, Construction of a complete genomic library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3.7 kb resolution, Yeast 1995 Feb;11(2):121-35.

Gangloff S, McDonald JP, Bendixen C, Arthur L, Rothstein R, The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase, Mol. Cell. Biol. 1994 Dec;14(12):8391-8.

Beckers MC, Bar I, Huynh-Thu T, Dernoncourt C, Brunialti AL, Montagutelli X, Guénet JL, Goffinet AM, , A high-resolution genetic map of mouse chromosome 5 encompassing the reeler (rl) locus., Genomics 1994 Oct; 23(3): 685-90.

Faure G, Choumet V, Bouchier C, Camoin L, Guillaume JL, Monegier B, Vuilhorgne M, Bon C, The origin of the diversity of crotoxin isoforms in the venom of Crotalus durissus terrificus, Eur. J. Biochem. 1994 Jul;223(1):161-4.

Robert B, Montagutelli X, Houzelstein D, Ferland L, Cohen A, Buckingham M, Guénet JL, Msx1 is close but not allelic to either Hm or Hx on mouse chromosome 5., Mamm Genome 1994 Jul; 5(7): 446-9.

Dujon B, Alexandraki D, André B, Ansorge W, Baladron V, Ballesta JP, Banrevi A, Bolle PA, Bolotin-Fukuhara M, Bossier P, Bou G, Boyer J, Bultrago MJ, Cheret G, Colleaux L, Dalgnan-Fornler B, del Rey F, Dlon C, Domdey H, Düsterhoft A, Düsterhus S, Entlan KD, Erfle H, Esteban PF, Feldmann H, Fernandes L, Robo GM, Fritz C, Fukuhara H, Gabel C, Gaillon L, Carcia-Cantalejo JM, Garcia-Ramirez JJ, Gent NE, Ghazvini M, Goffeau A, Gonzaléz A, Grothues D, Guerreiro P, Hegemann J, Hewitt N, Hilger F, Hollenberg CP, Horaitis O, Indge KJ, Jacquier A, James CM, Jauniaux C, Jimenez A, Keuchel H, Kirchrath L, Kleine K, Kötter P, Legrain P, Liebl S, Louis EJ, Maia e Silva A, Marck C, Monnier AL, Möstl D, Müller S, Obermaier B, Oliver SG, Pallier C, Pascolo S, Pfeiffer F, Philippsen P, Planta RJ, Pohl FM, Pohl TM, Pöhlmann R, Portetelle D, Purnelle B, Puzos V, Ramezani Rad M, Rasmussen SW, Remacha M, Revuelta JL, Richard GF, Rieger M, Rodrigues-Pousada C, Rose M, Rupp T, Santos MA, Schwager C, Sensen C, Skala J, Soares H, Sor F, Stegemann J, Tettelin H, Thierry A, Tzermia M, Urrestarazu LA, van Dyck L, Van Vliet-Reedijk JC, Valens M, Vandenbo M, Vilela C, Vissers S, von Wettstein D, Voss H, Wiemann S, Xu G, Zimmermann J, Haasemann M, Becker I, Mewes HW, Complete DNA sequence of yeast chromosome XI, Nature 1994 Jun;369(6479):371-8.

Davies PO, Poirier C, Deltour L, Montagutelli X, , Genetic reassignment of the insulin-1 (Ins1) gene to distal mouse chromosome 19., Genomics 1994 Jun; 21(3): 665-7.

Bendixen C, Gangloff S, Rothstein R, A yeast mating-selection scheme for detection of protein-protein interactions, Nucleic Acids Res. 1994 May;22(9):1778-9.

Gangloff S, Lieber MR, Rothstein R, Transcription, topoisomerases and recombination, Experientia 1994 Mar;50(3):261-9.

Huang ME, Chuat JC, Thierry A, Dujon B, Galibert F, Construction of a cosmid contig and of an EcoRI restriction map of yeast chromosome X, DNA Seq. 1994;4(5):293-300.

Montagutelli X, Lalouette A, Coudé M, Kamoun P, Forest M, Guénet JL, , aku, a mutation of the mouse homologous to human alkaptonuria, maps to chromosome 16., Genomics 1994 Jan; 19(1): 9-11.

Coudé M, Montagutelli X, Guenet JL, Kamoun P, , Homogentisic acid oxidase activity in homozygous and heterozygous alkaptonuric mice., Ann. Biol. Clin. (Paris) 1994 ; 52(7-8): 569-70.

Janocha S, Wolz W, Srsen S, Srsnova K, Montagutelli X, Guénet JL, Grimm T, Kress W, Müller CR, , The human gene for alkaptonuria (AKU) maps to chromosome 3q., Genomics 1994 Jan; 19(1): 5-8.

Francesconi S, Copeland WC, Wang TS, In vivo species specificity of DNA polymerase alpha, Mol. Gen. Genet. 1993 Nov;241(3-4):457-66.

Bureau JF, Montagutelli X, Bihl F, Lefebvre S, Guénet JL, Brahic M, , Mapping loci influencing the persistence of Theiler’s virus in the murine central nervous system., Nat. Genet. 1993 Sep; 5(1): 87-91.

Francesconi S, Park H, Wang TS, Fission yeast with DNA polymerase delta temperature-sensitive alleles exhibits cell division cycle phenotype, Nucleic Acids Res. 1993 Aug;21(16):3821-8.

Scieux C, Grimont F, Regnault B, Bianchi A, Kowalski S, Grimont PA, Molecular typing of Chlamydia trachomatis by random amplification of polymorphic DNA, Res. Microbiol. 1993 Jun;144(5):395-404.

Boulechfar S, Lamoril J, Montagutelli X, Guenet JL, Deybach JC, Nordmann Y, Dailey H, Grandchamp B, de Verneuil H, , Ferrochelatase structural mutant (Fechm1Pas) in the house mouse., Genomics 1993 Jun; 16(3): 645-8.

Park H, Francesconi S, Wang TS, Cell cycle expression of two replicative DNA polymerases alpha and delta from Schizosaccharomyces pombe, Mol. Biol. Cell 1993 Feb;4(2):145-57.

Alonso S, Montagutelli X, Simon-Chazottes D, Guénet JL, Buckingham M, Re-localization of Actsk-1 to mouse chromosome 8, a new region of homology with human chromosome 1., Mamm Genome 1993 ; 4(1): 15-20.

Kondo Y, Mori M, Kuramoto T, Yamada J, Beckmann JS, Simon-Chazottes D, Montagutelli X, Guénet JL, Serikawa T, , DNA segments mapped by reciprocal use of microsatellite primers between mouse and rat., Mamm. Genome 1993 ; 4(10): 571-6.

Pascolo S, Ghazvini M, Boyer J, Colleaux L, Thierry A, Dujon B, The sequence of a 9.3 kb segment located on the left arm of the yeast chromosome XI reveals five open reading frames including the CCE1 gene and putative products related to MYO2 and to the ribosomal protein L10, Yeast 1992 Nov;8(11):987-95.

Scieux C, Grimont F, Regnault B, Grimont PA, DNA fingerprinting of Chlamydia trachomatis by use of ribosomal RNA, oligonucleotide and randomly cloned DNA probes, Res. Microbiol. 1992 Oct;143(8):755-65.

Bureau JF, Montagutelli X, Lefebvre S, Guénet JL, Pla M, Brahic M, , The interaction of two groups of murine genes determines the persistence of Theiler’s virus in the central nervous system., J. Virol. 1992 Aug; 66(8): 4698-704.

Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, Alexandraki D, Antoine G, Anwar R, Ballesta JP, Benit P, The complete DNA sequence of yeast chromosome III, Nature 1992 May;357(6373):38-46.

Kamoun P, Coude M, Forest M, Montagutelli X, Guenet JL, , Ascorbic acid and alkaptonuria., Eur. J. Pediatr. 1992 Feb; 151(2): 149.

Grimont F, Verger JM, Cornelis P, Limet J, Lefèvre M, Grayon M, Régnault B, Van Broeck J, Grimont PA, Molecular typing of Brucella with cloned DNA probes, Res. Microbiol. 1992 Jan;143(1):55-65.

Serikawa T, Montagutelli X, Simon-Chazottes D, Guénet JL, , Polymorphisms revealed by PCR with single, short-sized, arbitrary primers are reliable markers for mouse and rat gene mapping., Mamm. Genome 1992 ; 3(2): 65-72.

Le Roy H, Simon-Chazottes D, Montagutelli X, Guénet JL, , A set of anonymous DNA clones as markers for mouse gene mapping., Mamm. Genome 1992 ; 3(4): 244-6.

Bouchier C, Boyot P, Tesson F, Trémeau O, Bouet F, Hodgson D, Boulain JC, Ménez A, Notechis 11’2, a non-toxic phospholipase A2 from the venom of Notechis scutatus scutatus, Eur. J. Biochem. 1991 Dec;202(2):493-500.

Tutois S, Montagutelli X, Da Silva V, Jouault H, Rouyer-Fessard P, Leroy-Viard K, Guénet JL, Nordmann Y, Beuzard Y, Deybach JC, , Erythropoietic protoporphyria in the house mouse. A recessive inherited ferrochelatase deficiency with anemia, photosensitivity, and liver disease., J. Clin. Invest. 1991 Nov; 88(5): 1730-6.

Francesconi S, Longhese MP, Piseri A, Santocanale C, Lucchini G, Plevani P, Mutations in conserved yeast DNA primase domains impair DNA replication in vivo, Proc. Natl. Acad. Sci. U.S.A. 1991 May;88(9):3877-81.

Boyer S, Montagutelli X, Gomès D, Simon-Chazottes D, Guénet JL, Dupouey P, , Recent evolutionary origin of the expression of the glial fibrillary acidic protein (GFAP) in lens epithelial cells. A molecular and genetic analysis of various mouse species., Brain Res. Mol. Brain Res. 1991 May; 10(2): 159-66.

Bouchier C, Boulain JC, Bon C, Ménez A, Analysis of cDNAs encoding the two subunits of crotoxin, a phospholipase A2 neurotoxin from rattlesnake venom: the acidic non enzymatic subunit derives from a phospholipase A2-like precursor, Biochim. Biophys. Acta 1991 Mar;1088(3):401-8.

Montagutelli X, Serikawa T, Guénet JL, , PCR-analyzed microsatellites: data concerning laboratory and wild-derived mouse inbred strains., Mamm. Genome 1991 ; 1(4): 255-9.

Sheppard RD, Montagutelli X, Jean WC, Tsai JY, Rose A, Guénet JL, Cole MD, Silver LM, , Two-dimensional gel analysis of complex DNA families: methodology and apparatus., Mamm. Genome 1991 ; 1(2): 104-11.

Montagutelli X, , GENE-LINK: a program in PASCAL for backcross genetic analysis., J. Hered. ; 81(6): 490-1.

Gangloff SP, Marguet D, Lauquin GJ, Molecular cloning of the yeast mitochondrial aconitase gene (ACO1) and evidence of a synergistic regulation of expression by glucose plus glutamate, Mol. Cell. Biol. 1990 Jul;10(7):3551-61.

Pérolat P, Grimont F, Regnault B, Grimont PA, Fournié E, Thevenet H, Baranton G, rRNA gene restriction patterns of Leptospira: a molecular typing system, Res. Microbiol. 1990 Feb;141(2):159-71.

Bon C, Bouchier C, Choumet V, Faure G, Jiang MS, Lambezat MP, Radvanyi F, Saliou B, Crotoxin, half-century of investigations on a phospholipase A2 neurotoxin, Acta Physiol Pharmacol Latinoam 1989;39(4):439-48.

Charriere-Bertrand C, Le Prince G, Bouchier C, Fages C, Tardy M, Nunez J, Expression of tubulin, GFAP and of their encoding mRNAs during the proliferation and differentiation of cultured astrocytes, Neurochem. Int. 1989;15(2):215-22.

Plevani P, Foiani M, Muzi Falconi M, Pizzagalli A, Santocanale C, Francesconi S, Valsasnini P, Comedini A, Piatti S, Lucchini G, The yeast DNA polymerase-primase complex: genes and proteins, Biochim. Biophys. Acta 1988 Dec;951(2-3):268-73.

Ducancel F, Guignery-Frelat G, Bouchier C, Ménez A, Boulain JC, Sequence analysis of a cDNA encoding a PLA2 from the sea-snake Aipysurus laevis, Nucleic Acids Res. 1988 Sep;16(18):9048.

Bouchier C, Ducancel F, Guignery-Frelat G, Bon C, Boulain JC, Ménez A, Cloning and sequencing of cDNAs encoding the two subunits of Crotoxin, Nucleic Acids Res. 1988 Sep;16(18):9050.

Ducancel F, Guignery-Frelat G, Bouchier C, Ménez A, Boulain JC, Complete amino acid sequence of a PLA2 from the tiger snake Notechis scutatus scutatus as deduced from a complementary DNA, Nucleic Acids Res. 1988 Sep;16(18):9049.

Plevani P, Francesconi S, Lucchini G, The nucleotide sequence of the PRI1 gene related to DNA primase in Saccharomyces cerevisiae, Nucleic Acids Res. 1987 Oct;15(19):7975-89.

Lucchini G, Francesconi S, Foiani M, Badaracco G, Plevani P, Yeast DNA polymerase–DNA primase complex; cloning of PRI 1, a single essential gene related to DNA primase activity, EMBO J. 1987 Mar;6(3):737-42.

Turut P, Pfaelzer I, Regnault B, [Idiopathic massive preretinal hemorrhage. Etiopathogenic hypothesis. Prognosis], Bull Soc Ophtalmol Fr 1985 Feb;85(2):229-32, 235.

Harris WS, Marai L, Myher JJ, Subbiah MT, Bile acid ethyl esters. Their infrequent formation during routine bile acid analysis and identification by gas chromatography and mass spectrometry, J. Chromatogr. 1977 Jan;131:437-41.

Nagradova NK, Asriiants RA, Ivanov MV, [Binding of 1-anilino-8-naphthalene sulfonate by glyceraldehyde-3-phosphate dehydrogenase], Biokhimiia 1972 Mar-Apr;37(2):299-304.

Deutsch V, Frankl O, Drory Y, Eliahou H, Braf ZF, Bilateral renal cortical necrosis with survival through the acute phase with a note on the value of selective nephroangiography, Am. J. Med. 1971 Jun;50(6):828-34.

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