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© Research
Publication : Bioinformatics (Oxford, England)

GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring

Team: Computational Systems Biomedicine
Team: Group: Translation dependent mRNA degradation
Team: Cytoplasmic mRNA surveillance in yeast
Member: Micheline Fromont-Racine
Scientific Fields
Diseases
Organisms
Applications
Technique

Published in Bioinformatics (Oxford, England) - 24 Nov 2006

Garcia O, Saveanu C, Cline M, Fromont-Racine M, Jacquier A, Schwikowski B, Aittokallio T

Link to Pubmed [PMID] – 17127678

Bioinformatics 2007 Feb;23(3):394-6

We have implemented a graph layout algorithm that exposes Gene Ontology (GO) class structure on the network nodes. It can be used in conjunction with BiNGO plug-in to Cytoscape, which finds the GO categories over-represented in a given network. Our plug-in, named GOlorize, first highlights the class members with category-specific color-coding and then constructs an enhanced visualization of the network using a class-directed layout algorithm.