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Deputy Director of National Reference Center
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Department: Computational Biology

All Publications

Gnaien M, Maufrais C, Rebai Y, Kallel A, Ma L, Hamouda S, Khalsi F, Meftah K, Smaoui H, Khemiri M, Hadj Fredj S, Bachellier-Bassi S, Najjar I, Messaoud T, Boussetta K, Kallel K, Mardassi H, d'Enfert C, Bougnoux ME, Znaidi S, A gain-of-function mutation in zinc cluster transcription factor Rob1 Drives Candida albicans adaptive growth in the cystic fibrosis lung environment., PLoS Pathog 2024 Apr; 20(4): e1012154.

H. Nguyen, A. Desgrange, A. Ochandorena-Saa, V. Benhamo, S. Meilhac and C. Zimmer, Deep learning-based detection of murine congenital heart defects from µCT scans, bioRxiv.

Houzelstein D, Eozenou C, Lagos CF, Elzaiat M, Bignon-Topalovic J, Gonzalez I, Laville V, Schlick L, Wankanit S, Madon P, Kirtane J, Athalye A, Buonocore F, Bigou S, Conway GS, Bohl D, Achermann JC, Bashamboo A, McElreavey K, A conserved NR5A1-responsive enhancer regulates SRY in testis-determination., Nat Commun 2024 Mar; 15(1): 2796.

T. Holm Bønnelykke, M-A. Chabry, E. Perthame, A. Desgrange and S. Meilhac, Notch3 is a genetic modifier of NODAL signalling for patterning asymmetry during mouse heart looping, bioRxiv.

Lopes A-A, Vendrell-Fernández S, Deschamps J, Georgeault S, Cokelaer T, Briandet R, Ghigo J-M, Bile-induced biofilm formation in Bacteroides thetaiotaomicron requires magnesium efflux by an RND pump., mBio 2024 Mar; (): e0348823.

Morel C, Lemerle E, Tsai FC, Obadia T, Srivastava N, Marechal M, Salles A, Albert M, Stefani C, Benito Y, Vandenesch F, Lamaze C, Vassilopoulos S, Piel M, Bassereau P, Gonzalez-Rodriguez D, Leduc C, Lemichez E, Caveolin-1 protects endothelial cells from extensive expansion of transcellular tunnel by stiffening the plasma membrane., Elife 2024 Mar; 12(): .

Estelle Darrau, Elise Jacquemet, Stéphanie Pons, Laurène Schlick, Marios Zouridakis, Ching-Lien Wu, Jean-Romain Richard, Caroline Barau, Philippe Le Corvoisier, Robert Yolken, Ryad Tamouza, Marion Leboyer, Uwe Maskos, Serum autoantibodies against α7-nicotinic receptors in subgroups of patients with bipolar disorder or schizophrenia: clinical features and link with peripheral inflammation, Translational Psychiatry, 2024, 14 (1), pp.146. ⟨10.1038/s41398-024-02853-8⟩.

Planas D, Staropoli I, Michel V, Lemoine F, Donati F, Prot M, Porrot F, Guivel-Benhassine F, Jeyarajah B, Brisebarre A, Dehan O, Avon L, Bolland WH, Hubert M, Buchrieser J, Vanhoucke T, Rosenbaum P, Veyer D, Péré H, Lina B, Trouillet-Assant S, Hocqueloux L, Prazuck T, Simon-Loriere E, Schwartz O, Distinct evolution of SARS-CoV-2 Omicron XBB and BA.2.86/JN.1 lineages combining increased fitness and antibody evasion., Nat Commun 2024 Mar; 15(1): 2254.

d'Humières C, Delavy M, Alla L, Ichou F, Gauliard E, Ghozlane A, Levenez F, Galleron N, Quinquis B, Pons N, Mullaert J, Bridier-Nahmias A, Condamine B, Touchon M, Rainteau D, Lamazière A, Lesnik P, Ponnaiah M, Lhomme M, Sertour N, Devente S, Docquier JD, Bougnoux ME, Tenaillon O, Magnan M, Ruppé E, Grall N, Duval X, Ehrlich D, Mentré F, Denamur E, Rocha EPC, Le Chatelier E, Burdet C, Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases., Microbiome 2024 Mar; 12(1): 50.

Pepey A, Souris M, Kim S, Obadia T, Chy S, Ea M, Ouk S, Remoue F, Sovannaroth S, Mueller I, Witkowski B, Vantaux A, Comparing malaria risk exposure in rural Cambodia population using GPS tracking and questionnaires., Malar J 2024 Mar; 23(1): 75.

Aouadi W, Najburg V, Legendre R, Varet H, Kergoat L, Tangy F, Larrous F, Komarova AV, Bourhy H, Comparative analysis of rabies pathogenic and vaccine strains detection by RIG-I-like receptors., Microbes Infect 2024 Mar; (): 105321.

Trimbour R, Deutschmann IM, Cantini L, Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS., Bioinformatics 2024 Mar; (): .

Morel M, Zhukova A, Lemoine F, Gascuel O, Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor., Genome Biol Evol 2024 Mar; (): .

Miriam Labusch, Melina Thetiot, Emmanuel Than-Trong, David Morizet, Marion Coolen, Hugo Varet, Rachel Legendre, Sara Ortica, Laure Mancini, Laure Bally-Cuif, Prosaposin maintains adult neural stem cells in a state associated with deep quiescence, Stem Cell Reports, 2024, S2213-6711 (24), pp.00045-6. ⟨10.1016/j.stemcr.2024.02.007⟩.

Grimée M, Tacoli C, Sandfort M, Obadia T, Taylor AR, Vantaux A, Robinson LJ, Lek D, Longley RJ, Mueller I, Popovici J, White MT, Witkowski B, Using serological diagnostics to characterize remaining high-incidence pockets of malaria in forest-fringe Cambodia., Malar J 2024 Feb; 23(1): 49.

Gabiane G, Bohers C, Mousson L, Obadia T, Dinglasan RR, Vazeille M, Dauga C, Viglietta M, Yébakima A, Vega-Rúa A, Gutiérrez Bugallo G, Gélvez Ramírez RM, Sonor F, Etienne M, Duclovel-Pame N, Blateau A, Smith-Ravin J, De Lamballerie X, Failloux AB, Evaluating vector competence for Yellow fever in the Caribbean., Nat Commun 2024 Feb; 15(1): 1236.

Anjou C, Lotoux A, Zhukova A, Royer M, Caulat LC, Capuzzo E, Morvan C, Martin-Verstraete I, The multiplicity of thioredoxin systems meets the specific lifestyles of Clostridia., PLoS Pathog 2024 Feb; 20(2): e1012001.

Saint-André V, Charbit B, Biton A, Rouilly V, Possémé C, Bertrand A, Rotival M, Bergstedt J, Patin E, Albert ML, Quintana-Murci L, Duffy D, Smoking changes adaptive immunity with persistent effects., Nature 2024 Feb; 626(8000): 827-835.

Obara CJ, Nixon-Abell J, Moore AS, Riccio F, Hoffman DP, Shtengel G, Xu CS, Schaefer K, Pasolli HA, Masson JB, Hess HF, Calderon CP, Blackstone C, Lippincott-Schwartz J, Motion of VAPB molecules reveals ER-mitochondria contact site subdomains., Nature 2024 Jan; (): .

Emeline Perthame, Loïc Chartier, Jean-Claude George, Marie Varloud, Elisabeth Ferquel, Valérie Choumet, Case presentation and management of Lyme disease patients: a 9-year retrospective analysis in France, Frontiers in Medicine, 2024, 10, pp.1296486. ⟨10.3389/fmed.2023.1296486⟩.

Matamoro-Vidal A, Cumming T, Davidović A, Levillayer F, Levayer R, Patterned apoptosis has an instructive role for local growth and tissue shape regulation in a fast-growing epithelium., Curr Biol 2024 Jan; (): .

Chervova A, Molliex A, Baymaz HI, Coux RX, Papadopoulou T, Mueller F, Hercul E, Fournier D, Dubois A, Gaiani N, Beli P, Festuccia N, Navarro P, Mitotic bookmarking redundancy by nuclear receptors in pluripotent cells., Nat Struct Mol Biol 2024 Jan; (): .

Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frédéric Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo P C Rocha, Didier Mazel, Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites, Nature Microbiology, 2024, 9 (1), pp.228-240. ⟨10.1038/s41564-023-01548-y⟩.

Patitucci C, Hernández-Camacho JD, Vimont E, Yde S, Cokelaer T, Chaze T, Giai Gianetto Q, Matondo M, Gazi A, Nemazanyy I, Stroud DA, Hock DH, Donnarumma E, Wai T, Mtfp1 ablation enhances mitochondrial respiration and protects against hepatic steatosis., Nat Commun 2023 Dec; 14(1): 8474.

Sebastian Duchene, Tracing the origin of virulence, Sciences.

Shrestha S, Taib N, Gribaldo S, Shen A, Diversification of division mechanisms in endospore-forming bacteria revealed by analyses of peptidoglycan synthesis in Clostridioides difficile., Nat Commun 2023 Dec; 14(1): 7975.

Bergsten E, Mestivier D, Donnadieu F, Pedron T, Barau C, Meda LT, Mettouchi A, Lemichez E, Gorgette O, Chamaillard M, Vaysse A, Volant S, Doukani A, Sansonetti PJ, Sobhani I, Nigro G, Parvimonas micra, an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes., Gut Microbes 2023 Dec; 15(2): 2265138.

Fourgeaud J, Regnault B, Ok V, Da Rocha N, Sitterlé É, Mekouar M, Faury H, Milliancourt-Seels C, Jagorel F, Chrétien D, Bigot T, Troadec É, Marques I, Serris A, Seilhean D, Neven B, Frange P, Ferroni A, Lecuit M, Nassif X, Lortholary O, Leruez-Ville M, Pérot P, Eloit M, Jamet A, Performance of clinical metagenomics in France: a prospective observational study., Lancet Microbe 2023 Dec; (): .

Delavy M, Sertour N, Patin E, Le Chatelier E, Cole N, Dubois F, Xie Z, Saint-André V, Manichanh C, Walker AW, Quintana-Murci L, Duffy D, d'Enfert C, Bougnoux ME, Consortium MI, Unveiling Candida albicans intestinal carriage in healthy volunteers: the role of micro- and mycobiota, diet, host genetics and immune response., Gut Microbes 2023 Dec; 15(2): 2287618.

Pasquereau-Kotula E, du Merle L, Sismeiro O, Pietrosemoli N, Varet H, Legendre R, Trieu-Cuot P, Dramsi S, Transcriptome profiling of human col\onic cells exposed to the gut pathobiont Streptococcus gallolyticus subsp. gallolyticus., PLoS One 2023 ; 18(11): e0294868.

Andreace F, Lechat P, Dufresne Y, Chikhi R, Comparing methods for constructing and representing human pangenome graphs., Genome Biol 2023 Nov; 24(1): 274.

de Castro RJA, Marina CL, Sturny-Leclère A, Hoffmann C, Bürgel PH, Wong SSW, Aimanianda V, Varet H, Agrawal R, Bocca AL, Alanio A, Kicking sleepers out of bed: Macrophages promote reactivation of dormant Cryptococcus neoformans by extracellular vesicle release and non-lytic exocytosis., PLoS Pathog 2023 Nov; 19(11): e1011841.

J Michael Henderson, Nina Ljubojevic, Sevan Belian, Thibault Chaze, Daryl Castaneda, Aude Battistella, Quentin Giai Gianetto, Mariette Matondo, Stéphanie Descroix, Patricia Bassereau, Chiara Zurzolo, Tunnelling nanotube formation is driven by Eps8/IRSp53‐dependent linear actin polymerization, EMBO Journal, 2023, pp.e113761. ⟨10.15252/embj.2023113761⟩.

Huizing GJ, Deutschmann IM, Peyré G, Cantini L, Paired single-cell multi-omics data integration with Mowgli., Nat Commun 2023 Nov; 14(1): 7711.

Grasekamp KP, Beaud Benyahia B, Taib N, Audrain B, Bardiaux B, Rossez Y, Izadi-Pruneyre N, Lejeune M, Trivelli X, Chouit Z, Guerardel Y, Ghigo JM, Gribaldo S, Beloin C, The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope bridge for phospholipid trafficking., Nat Commun 2023 Nov; 14(1): 7642.

Bianca Elena Bratuleanu, Cristian Răileanu, Amal Bennouna, Delphine Chretien, Thomas Bigot, Pablo Guardado-Calvo, Gheorghe Savuta, Sara Moutailler, Marc Eloit, Sarah Temmam, Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses, Transboundary and emerging diseases, 2023, 2023, pp.1-14. ⟨10.1155/2023/6661723⟩.

Duitama González C, Rangavittal S, Vicedomini R, Chikhi R, Richard H, aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets., iScience 2023 Nov; 26(11): 108057.

Duitama González C, Vicedomini R, Lemane T, Rascovan N, Richard H, Chikhi R, decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods., Microbiome 2023 Nov; 11(1): 243.

Bernheim S, Borgel A, Le Garrec JF, Perthame E, Desgrange A, Michel C, Guillemot L, Sart S, Baroud CN, Krezel W, Raimondi F, Bonnet D, Zaffran S, Houyel L, Meilhac SM, Identification of Greb1l as a genetic determinant of crisscross heart in mice showing torsion of the heart tube by shortage of progenitor cells., Dev Cell 2023 Oct; 58(21).

Alex Barbier-Chebbah, Christian L. Vestergaard, Jean-Baptiste Masson, Etienne Boursier, Approximate information maximization for bandit games, 2023.

Di Carlo SE, Raffenne J, Varet H, Ode A, Granados DC, Stein M, Legendre R, Tuckermann J, Bousquet C, Peduto L, Depletion of slow-cycling PDGFRα+ADAM12+ mesenchymal cells promotes antitumor immunity by restricting macrophage efferocytosis., Nat Immunol 2023 Oct; (): .

Selam Mihreteab, Lucien Platon, Araia Berhane, Barbara Stokes, Marian Warsame, Pascal Campagne, Alexis Criscuolo, Laurence Ma, Nathalie Petiot, Cécile Doderer-Lang, Eric Legrand, Kurt Ward, Assefash Zehaie Kassahun, Pascal Ringwald, David Fidock, Didier Ménard, Increasing Prevalence of Artemisinin-Resistant HRP2-Negative Malaria in Eritrea, New England Journal of Medicine, 2023, 389 (13), pp.1191-1202. ⟨10.1056/NEJMoa2210956⟩.

Kosasih A, James R, Chau NH, Karman MM, Panggalo LV, Wini L, Thanh NV, Obadia T, Satyagraha AW, Asih PBS, Syafruddin D, Taylor WRJ, Mueller I, Sutanto I, Karunajeewa H, Pasaribu AP, Baird JK, Case Series of Primaquine-Induced Haemolytic Events in Controlled Trials with G6PD Screening., Pathogens 2023 Sep; 12(9): .

Zhukova A, Hecht F, Maday Y, Gascuel O, Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees., Syst Biol 2023 Sep; (): .

Lafoux B, Baillet N, Picard C, Fourcaud G, Borges-Cardoso V, Reynard S, Journeaux A, Germain C, Perthame E, Mateo M, Hortion J, Carnec X, Pietrosemoli N, Moroso M, Lacroix O, Jourjon O, Barron S, Vallve A, Duthey A, Jacquot F, Barrot L, Dirheimer M, Raoul H, Nougier C, Baize S, Hemostasis defects underlying the hemorrhagic syndrome caused by Mammarenaviruses in a cynomolgus macaque model., Blood 2023 Sep; (): .

Crochemore C, Chica C, Garagnani P, Lattanzi G, Horvath S, Sarasin A, Franceschi C, Bacalini MG, Ricchetti M, Epigenomic signature of accelerated ageing in progeroid Cockayne syndrome., Aging Cell 2023 Sep; (): e13959.

Temmam S, Tu TC, Regnault B, Bonomi M, Chrétien D, Vendramini L, Duong TN, Phong TV, Yen NT, Anh HN, Son TH, Anh PT, Amara F, Bigot T, Munier S, Thong VD, van der Werf S, Nam VS, Eloit M, Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence., Viruses 2023 Sep; 15(9): .

Caro H, Dollin S, Biton A, Brancotte B, Desvillechabrol D, Dufresne Y, Li B, Kornobis E, Lemoine F, Maillet N, Perrin A, Traut N, Néron B, Cokelaer T, BioConvert: a comprehensive format converter for life sciences., NAR Genom Bioinform 2023 Sep; 5(3): lqad074.

Amal Bennouna, Michael Luciano Tantely, Vololoniaina Raharinosy, Soa Fy Andriamandimby, Thomas Bigot, Delphine Chrétien, Elise Jacquemet, Stevenn Volant, Sarah Temmam, Philippe Dussart, Vincent Lacoste, Romain Girod, Marc Eloit, Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar, Viruses, 2023, 15 (9), pp.1852. ⟨10.3390/v15091852⟩.

Amatur Rahman, Yoann Dufresne, Paul Medvedev, Compression Algorithm for Colored de Bruijn Graphs, Leibniz International Proceedings in Informatics , 273 (17), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp.1-14, 2023, 978-3-95977-294-5. ⟨10.4230/LIPIcs.WABI.2023.17⟩.

Boulch M, Cazaux M, Cuffel A, Ruggiu M, Allain V, Corre B, Loe-Mie Y, Hosten B, Cisternino S, Auvity S, Thieblemont C, Caillat-Zucman S, Bousso P, A major role for CD4+ T cells in driving cytokine release syndrome during CAR T cell therapy., Cell Rep Med 2023 Aug; (): 101161.

Zaharias P, Lemoine F, Gascuel O, Robustness of Felsenstein’s Versus Transfer Bootstrap Supports With Respect to Taxon Sampling., Syst Biol 2023 Aug; (): .

Maxime Borry, Adrian Forsythe, Aida Andrades Valtueña, Alexander Hübner, Anan Ibrahim, Andrea Quagliariello, Anna E White, Arthur Kocher, Bjørn Peare Bartholdy, Diāna Spurīte, Gabriel Yaxal Ponce-Soto, Gunnar Neumann, I-Ting Huang, Ian Light, Irina M Velsko, Iseult Jackson, Jasmin Frangenberg, Javier G Serrano, Julien Fumey, Kadir T Özdoğan, Kelly E Blevins, Kevin G Daly, Maria Lopopolo, Markella Moraitou, Megan Michel, Meriam van Os, Miriam J Bravo-Lopez, Mohamed S Sarhan, Nihan D Dagtas, Nikolay Oskolkov, Olivia S Smith, Ophélie Lebrasseur, Piotr Rozwalak, Raphael Eisenhofer, Sally Wasef, Shreya L Ramachandran, Valentina Vanghi, Christina Warinner, James A Fellows Yates, Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT, F1000Research, 2023, 12, pp.926. ⟨10.12688/f1000research.134798.1⟩.

O'Donnell S, Yue JX, Saada OA, Agier N, Caradec C, Cokelaer T, De Chiara M, Delmas S, Dutreux F, Fournier T, Friedrich A, Kornobis E, Li J, Miao Z, Tattini L, Schacherer J, Liti G, Fischer G, Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae., Nat Genet 2023 Aug; 55(8): 1390-1399.

Lebrun E, Shenshin V, Plaire C, Vigneres V, Pizette T, Dumas B, Nicaud JM, Mottet G, Efficient full-length IgG secretion and sorting from single yeast clones in droplet picoreactors., Lab Chip 2023 Jul; 23(15): 3487-3500.

Legendre L, Rode J, Germon I, Pavie M, Quiviger C, Policarpo M, Leclercq J, Père S, Fumey J, Hyacinthe C, Ornelas-García P, Espinasa L, Rétaux S, Casane D, Genetic identification and reiterated captures suggest that the Astyanax mexicanus El Pachón cavefish population is closed and declining., Zool Res 2023 Jul; 44(4): 701-711.

Céline Cuche, Marta Mastrogiovanni, Marie Juzans, Hélène Laude, Marie-Noëlle Ungeheuer, Daniel Krentzel, Maria Isabella Gariboldi, Daniel Scott-Algara, Marianne Madec, Sophie Goyard, Camille Floch, Gaëlle Chauveau-Le Friec, Pierre Lafaye, Charlotte Renaudat, Muriel Le Bidan, Christine Micallef, Sandrine Schmutz, Sébastien Mella, Sophie Novault, Milena Hasan, Darragh Duffy, Vincenzo Di Bartolo, Andrés Alcover, T cell migration and effector function differences in familial adenomatous polyposis patients with APC gene mutations, Frontiers in Immunology, 2023, 14, pp.1163466. ⟨10.3389/fimmu.2023.1163466⟩.

Holtz A, Baele G, Bourhy H, Zhukova A, Integrating full and partial genome sequences to decipher the global spread of canine rabies virus., Nat Commun 2023 Jul; 14(1): 4247.

Uzum Z, Ershov D, Pavia MJ, Mallet A, Gorgette O, Plantard O, Sassera D, Stavru F, Three-dimensional images reveal the impact of the endosymbiont Midichloria mitochondrii on the host mitochondria., Nat Commun 2023 Jul; 14(1): 4133.

Fox ZR, Batt G, Ruess J, Bayesian filtering for model predictive control of stochastic gene expression in single cells, Phys Biol 2023 Jul 12; 20(5):055003 .

José Lista M, Jousset A, Cheng M, SaintAndré V, Perrot E, Rodrigues M, Di Primo C, Gadelle D, Toccafondi E, Segeral E, BerliozTorrent C, Emiliani S, Mergny J, Lavigne M, Correction to: DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence., Retrovirology 2023 Jul; 20(1): 12.

Alex Barbier--Chebbah, Christian L. Vestergaard, Jean-Baptiste Masson, Approximate information for efficient exploration-exploitation strategies Information approximée pour des stratégies d’exploration-exploitation efficaces, 2023.

Krentzel D, Shorte SL, Zimmer C, Deep learning in image-based phenotypic drug discovery., Trends Cell Biol 2023 Jul; 33(7): 538-554.

Cokelaer T, Cohen-Boulakia S, Lemoine F, Reprohackathons: promoting reproducibility in bioinformatics through training., Bioinformatics 2023 Jun; 39(39 Suppl 1): i11-i20.

Ekim B, Sahlin K, Medvedev P, Berger B, Chikhi R, Efficient mapping of accurate long reads in minimizer space with mapquik., Genome Res 2023 Jun; (): .

Groeneveld CS, Sanchez-Quiles V, Dufour F, Shi M, Dingli F, Nicolle R, Chapeaublanc E, Poullet P, Jeffery D, Krucker C, Maillé P, Vacherot F, Vordos D, Benhamou S, Lebret T, Micheau O, Zinovyev A, Loew D, Allory Y, de Reyniès A, Bernard-Pierrot I, Radvanyi F, Proteogenomic Characterization of Bladder Cancer Reveals Sensitivity to Apoptosis Induced by Tumor Necrosis Factor-related Apoptosis-inducing Ligand in FGFR3-mutated Tumors., Eur Urol 2023 Jun; (): .

Juliana Rizzo, Adèle Trottier, Frédérique Moyrand, Jean-Yves J.-Y. Coppée, Corinne Maufrais, Ana Claudia G. Zimbres, Thi Tuong Vi Dang, Alexandre Alanio, M. Desnos-Ollivier, Isabelle Mouyna, Gérard Péhau-Arnaude, Pierre-Henri Commere, Sophie Novault, Iuliana V. Ene, Leonardo Nimrichter, Marcio Rodrigues, Guilhem Janbon, Coregulation of extracellular vesicle production and fluconazole susceptibility in Cryptococcus neoformans, mBio, 2023, pp.e00870-23. ⟨10.1128/mbio.00870-23⟩.

Nekkab N, Obadia T, Monteiro WM, Lacerda MVG, White M, Mueller I, Accelerating towards P. vivax elimination with a novel serological test-and-treat strategy: a modelling case study in Brazil., Lancet Reg Health Am 2023 Jun; 22(): 100511.

Bertelli F, Raimondi F, Godard C, Bergonzoni E, Cattapan C, Gastino E, Galliotto F, Boddaert N, El Beheiry M, Masson JB, Guariento A, Vida VL, Fast-track virtual reality software to facilitate 3-dimensional reconstruction in congenital heart disease., Interdiscip Cardiovasc Thorac Surg 2023 Jun; 36(6): .

María José Lista, Anne-Caroline Jousset, Mingpan Cheng, Violaine Saint-André, Elouan Perrot, Melissa Rodrigues, Carmelo Di Primo, Danielle Gadelle, Elenia Toccafondi, Emmanuel Segeral, Clarisse Berlioz-Torrent, Stéphane Emiliani, Jean-Louis Mergny, Marc Lavigne, DNA topoisomerase 1 represses HIV-1 promoter activity through its interaction with a guanine quadruplex present in the LTR sequence, Retrovirology, 2023, 20 (1), pp.10. ⟨10.1186/s12977-023-00625-8⟩.

Zhukova A, Dunn D, Gascuel O, Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK., Viruses 2023 May; 15(6): .

Suspène R, Raymond KA, Boutin L, Guillier S, Lemoine F, Ferraris O, Tournier JN, Iseni F, Simon-Lorière E, Vartanian JP, APOBEC3F is a mutational driver of the human Monkeypox virus identified in the 2022 outbreak., J Infect Dis 2023 May; (): .

Julia Kende, Massimiliano Bonomi, Sarah Temmam, Béatrice Regnault, Philippe Pérot, Marc Eloit, Thomas Bigot, Virus Pop—Expanding Viral Databases by Protein Sequence Simulation, Viruses, 2023, 15 (6), pp.1227. ⟨10.3390/v15061227⟩.

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