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© Research
Publication : International journal of systematic and evolutionary microbiology

Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid

Scientific Fields
Diseases
Organisms
Applications
Technique

Published in International journal of systematic and evolutionary microbiology - 08 Apr 2019

Kämpfer P, Busse HJ, Criscuolo A, Bizet C, Clermont D, McInroy JA, Glaeser SP

Link to Pubmed [PMID] – 30958260

Int. J. Syst. Evol. Microbiol. 2019 Apr;

A slightly beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain IMT-318, was isolated from soil in a field located in Malvern, Alabama, USA. Phylogenetic analysis based on the 16S rRNA gene placed the strain within the genus Pigmentiphaga with highest 16S rRNA gene sequence similarity of 98.74 % and 98.67 % to the type strains of Pigmentiphaga kullae and Pigmentiphaga daeguensis, respectively. Sequence similarities to all other species of the genus were below 98.0 %. Results of the chemotaxonomic analysis, however, showed clear similarities to the genus Pigmentiphaga. The main cellular fatty acids of the strain were C16 : 0, C18 : 1 ω7c, C17 : 0 cyclo and C19 : 0 cyclo ω8c. The major quinone was ubiquinone Q-8. The polar lipid profile was composed of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unidentified aminophospholipid. In the polyamine pattern, putrescine and 2-hydroxyputrescine were predominant. The diamino acid of the peptidoglycan was meso-diaminopimelic acid. Based on phylogenetic, chemotaxonomic and phenotypic analyses, we propose a new species of the genus Pigmentiphaga, with the name Pigmentiphaga humi sp. nov. and strain IMT-318 (=LMG 30658=CIP 111626=CCM 8859) as the type strain.

https://www.ncbi.nlm.nih.gov/pubmed/30958260