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© Research
Publication : F1000Research

The Cytoscape Automation app article collection

Scientific Fields
Diseases
Organisms
Applications
Technique

Published in F1000Research - 20 Jun 2018

Demchak B, Otasek D, Pico AR, Bader GD, Ono K, Settle B, Sage E, Morris JH, Longabaugh W, Lopes C, Kucera M, Treister A, Schwikowski B, Molenaar P, Ideker T

Link to Pubmed [PMID] – 29983926

F1000Res 2018;7:800

Cytoscape is the premiere platform for interactive analysis, integration and visualization of network data. While Cytoscape itself delivers much basic functionality, it relies on community-written apps to deliver specialized functions and analyses. To date, Cytoscape’s CyREST feature has allowed researchers to write workflows that call basic Cytoscape functions, but provides no access to its high value app-based functions. With Cytoscape Automation, workflows can now call apps that have been upgraded to expose their functionality. This article collection is a resource to assist readers in quickly and economically leveraging such apps in reproducible workflows that scale independently to large data sets and production runs.

https://www.ncbi.nlm.nih.gov/pubmed/29983926