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About

Description

The HUB Team led by Marie-Agnès Dillies and Christophe Malabat is part of the Center of Bioinformatics, BioStatistics and Integrative Biology. The HUB team is composed by biostatistics and bioinformatics experts.

The Hub offers various services to the campus :

  • Short questions : if you have a simple question about bioinformatics and / or statistics, you can ask your question on our website. A mail is sent to all Hub members and one of them will answer you within a few hours.
  • Open desk : come and discuss about your data, your project, your analyses or just about bioinformatics and biostatistics every Tuesday morning from 10 to 12 at First floor of Yersin building (building 14). Hub members with complementary fields of expertise will be ready to answer your questions and discuss with you.
  • Collaborative projects : if you are starting a project or you are planning experiments and you need advice and / or help in bioinformatics and biostatistics to analyze your data or develop a specific software. Dedicated Hub members can be involved in your project from the beginning.

    Submit your project on our website

    We will acknowledge your submission and contact you to define more precisely your needs, the time and the expertise needed to do the job and the Hub member(s) that will be involved. We have three types of projects, depending on the cumulative time needed to do it

    • Short (less than one month) and
    • Long (more than one month). Decisions concerning long projects are taken by the C3BI steering committee that meets every 4 months.

Hub members involved in collaborative projects can be embedded in your unit if a close cooperation is needed for more efficiency. The rules to welcome a Hub member in your lab are described here.

You can have an overview of all the ongoing projects here.

>

All projects submitted to the HUB, since it’s creation, by the different Units of the campus

  • Trainings : the Hub offers practical trainings on specific bioinformatics and biostatistics topics throughout the year. These training sessions are of open access to all people from the Institut. The program can be checked here.
  • Software development : the Hub develops specific software on demand when existing tools do not fulfill the user needs. You can find all the tools developed within the Institut Pasteur on the Bioweb website.

Members

Groups

Courses

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]

2019-10-07 09:30:00 2019-11-11 17:30:00 Europe/Paris Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […] 28 Rue du Dr Roux, Paris, France

Introduction to Application development in Shiny

L’Institut Français de Bioinformatique organise en partenariat avec le SIB (Swiss Institute of Bioinformatics) une formation au package R-Shiny les 9 et 10 juillet 2019 à l’I. Pasteur (Paris). L’objectif de la formation est […]

2019-09-12 10:00:00 2019-09-13 18:00:00 Europe/Paris Introduction to Application development in Shiny L’Institut Français de Bioinformatique organise en partenariat avec le SIB (Swiss Institute of Bioinformatics) une formation au package R-Shiny les 9 et 10 juillet 2019 à l’I. Pasteur (Paris). L’objectif de la formation est […] 25-28 Rue du Dr Roux, 75015 Paris, France

High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics

The National Center for Aquaculture and Marine Research (CENAIM) of the Polytechnic School of the Litoral (Ecuador), the Computational Biology and Microbial Ecology Group (BCEM) of the Universidad de los Andes (Colombia) and the […]

2018-09-13 09:00:00 2018-09-21 17:00:00 Europe/Paris High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics The National Center for Aquaculture and Marine Research (CENAIM) of the Polytechnic School of the Litoral (Ecuador), the Computational Biology and Microbial Ecology Group (BCEM) of the Universidad de los Andes (Colombia) and the […] Escuela superior politécnica del litoral, Guayaquil, Ecuador

From genes to function: a survival guide to web-based tools for microbiologists

Target Audience: PhD students, Post-doctoral fellows, Research Staff and PIs that work in any field related to microbiology that requires to understand or predict gene function. Summary: Methods to allow experimental scientists lacking computer […]

2019-06-17 08:30:00 2019-06-21 17:30:00 Europe/Paris From genes to function: a survival guide to web-based tools for microbiologists Target Audience: PhD students, Post-doctoral fellows, Research Staff and PIs that work in any field related to microbiology that requires to understand or predict gene function. Summary: Methods to allow experimental scientists lacking computer […] Institut Pasteur, Rue du Docteur Roux, Paris, France

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]

2017-12-18 09:30:00 2017-12-22 17:30:00 Europe/Paris INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […] 25-28 Rue du Dr Roux, 75015 Paris, France

Scientific Programming in Python

The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]

2017-03-06 09:30:00 2017-03-18 17:00:00 Europe/Paris Scientific Programming in Python The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […] 25 Rue du Dr Roux, 75015 Paris, France

Introduction to Python Programming

Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]

2018-06-04 09:30:00 2018-06-08 17:00:00 Europe/Paris Introduction to Python Programming Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […] 25 Rue du Dr Roux, 75015 Paris, France

Morning session – Data analysis using R

This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […]

2016-03-08 09:00:00 2016-04-12 12:00:00 Europe/Paris Morning session – Data analysis using R This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […] 28 Rue du Docteur Roux, Paris, France

sincellTE

Single cell transcriptomics and Epigenomics: Theory and Practice This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the […]

2018-06-17 18:00:00 2018-06-22 14:00:00 Europe/Paris sincellTE Single cell transcriptomics and Epigenomics: Theory and Practice This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the […] Station Biologique de Roscoff, Place Georges Teissier, Roscoff, France

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

2018-10-22 08:00:00 2018-10-27 19:00:00 Europe/Paris C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018 General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong

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Open Desk

You have great data and you need help to analyse them. You have programming issues and you want to discuss that. Or you just want to talk about bioinformatics. Feel free to come and […]

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Contact

Phone: +33 (0)1 44 38 93 72 Email: bionfo-ask@pasteur.fr Address 25-28 Rue du Docteur Roux 75015, Paris France