Anna Zhukova

Large phylogenies module (COVEME)

“Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology” (VEME) workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]

2021-09-02 13:00:00 2021-09-02 18:00:00 Europe/Paris Large phylogenies module (COVEME) “Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology” (VEME) workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]

Sep 2021

Molecular evolution and phylogenetics module (IBT 2021 H3ABioNet)

The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]

2021-09-28 09:00:00 2021-10-07 14:00:00 Europe/Paris Molecular evolution and phylogenetics module (IBT 2021 H3ABioNet) The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […] Africa

Jul 2020

Molecular evolution and phylogenetics module (IBT 2020 H3ABioNet)

The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]

2020-07-28 09:00:00 2020-08-06 17:00:00 Europe/Paris Molecular evolution and phylogenetics module (IBT 2020 H3ABioNet) The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […] Africa

13:45

Dec 2018

minicourse Introduction to Phylogenetics – CentraleSupélec

The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […]

2018-12-18 13:45:00 2018-12-18 17:00:00 Europe/Paris minicourse Introduction to Phylogenetics – CentraleSupélec The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […] Centralesupélec, Rue Joliot Curie, Gif-sur-Yvette, France

Dec 2020

Introduction to Molecular Phylogenetics – ENS Paris

Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

2020-12-14 09:00:00 2020-12-18 18:00:00 Europe/Paris Introduction to Molecular Phylogenetics – ENS Paris Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] Ens Ulm, Rue d'Ulm, Paris, France

Oct 2019

Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019

Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […]

Institut Pasteur de Montevideo

Olivier Gascuel

Miraine Davila Felipe

2019-10-22 09:00:00 2019-10-24 17:00:00 Europe/Paris Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019 Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […] Institut Pasteur de Montevideo, Mataojo, Montevideo Montevideo Department, Uruguay

Oct 2019

Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019

Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics. Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […]

Miraine Davila Felipe

2019-10-14 09:00:00 2019-10-18 16:00:00 Europe/Paris Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019 Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics. Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […] Institute of Tropical Medicine “Pedro Kourí” (IPK), Havana, Cuba

Oct 2019

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]

2019-10-07 09:30:00 2019-11-11 17:30:00 Europe/Paris Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […] 28 Rue du Dr Roux, Paris, France

Feb 2019

Introduction à la phylogénie moléculaire

Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]

2019-02-18 09:00:00 2019-02-22 17:00:00 Europe/Paris Introduction à la phylogénie moléculaire Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […] 28 Rue du Dr Roux, Paris, France

Mar 2017

Scientific Programming in Python

The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]

2017-03-06 09:30:00 2017-03-18 17:00:00 Europe/Paris Scientific Programming in Python The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […] 25 Rue du Dr Roux, 75015 Paris, France

Jun 2018

Introduction to Python Programming

Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]

2018-06-04 09:30:00 2018-06-08 17:00:00 Europe/Paris Introduction to Python Programming Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […] 25 Rue du Dr Roux, 75015 Paris, France

Jan 2017

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]

Stéphane Descorps-Declère

Quentin Giai Gianetto

2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France

08:00

Oct 2018

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

Hong Kong University-Pasteur Research Pole

2018-10-22 08:00:00 2018-10-27 19:00:00 Europe/Paris C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018 General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong

Dec 2017

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]

2017-12-18 09:30:00 2017-12-22 17:30:00 Europe/Paris INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […] 25-28 Rue du Dr Roux, 75015 Paris, France

Transversal Projects

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

IINCEPTION Goal The Inception’s goal is to develop a core structure to mobilize data resources, numerical sciences, and fundamental experimental biology in a range of health issues (Official website here : https://www.inception-program.fr/en). Inception program […]

Projects

6 Members

The dynamics of HIV-1 epidemics in Cuba (Campus France)

We received a grant by Campus France (PHC Carlos J Finlay, 2019-20210) to collaborate with the team of Dr Vivian Kourí Cardellá from Instituto de Medicina Tropical Pedro Kourí (Habana) on the dynamics of […]

3 Members

Phylogeography

Anna Zhukova (PI)

Phylogeography is a field of study concerned with the principles and processes governing the geographic distributions of genealogical lineages, especially those within or among closely related species. [Avise et al. Ann Rev Ecol Syst […]

5 Members

The phylodynamics of partner notification and contact tracing in HIV epidemics

We develop phylodynamics models and methods to study viral epidemics, in particular HIV. This new, trendy domain is in between usual mathematical epidemiology, typically based on compartment models, and phylogenetics. The models used in […]

16 Members

Bioconvert

Thomas Cokelaer (PI)

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. Life science uses many different formats. They may be old, or with complex syntax and converting […]

3 Members

Ancestral Reconstruction

In 2019 we published several results on ancestral reconstruction, notably in Molecular Biology and Evolution, Systematic Biology and Bioinformatics. The reconstruction of ancestral scenarios is widely used to study the evolution of characters along […]

5 Members

HIV-1 Drug Resistance Mutation analysis

Anna Zhukova (PI)

HIV-1 drug resistance mutations (DRMs) can be dangerous not only on the individual level but also for the whole population. Acquired drug resistance (ADR) appears under drug selective pressure and limits the choice of […]

7 Members

Virogenesis

Virus discovery and epidemic tracing from high throughput metagenomic sequencing VIROGENESIS is a research project under the EC H2020 framework (2015-2018), that will develop bioinformatics software applications to fully exploit the potential of high-throughput Next-Generation-Sequencing […]

Javier Pizarro-Cerda (PI)

3 Members

Systems biology of cell infection by the bacterial pathogen Listeria monocytogenes

In the context of the Swiss consortium InfectX (www.infectx.ch), we have previously performed siRNA, microRNA and drug screens to investigate signaling pathways modulating invasion of host cells by the bacterial pathogen Listeria monocytogenes. In […]

Software