A computer scientist by training, I am applying this knowledge to solve biological problems and am particularly interested in mathematical modelling of biological systems, knowledge inference and data visualisation.
My research mainly focuses on improving our understanding of transmission patterns of drug resistance and geographic spread of HIV, via development of new methods and tools for phylodynamics and phylogeography.
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […]
Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […]
Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics. Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […]
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]
The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]
Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]
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| since 2015, Paris FR | Research Engineer @ Institut Pasteur | phylodynamics, phylogeography |
| 2014-15, Bordeaux FR | Postdoc @ IBGC CNRS UMR 5095/U. of Bordeaux | modelling mitochondrial metabolism |
| 2011-14, Bordeaux FR | Doctoral researcher @ Inria/U. of Bordeaux/CNRS joint project-team MAGNOME | knowledge-based generalization and visualization for metabolic models |
| 2011, Cambridge, UK | Intern @ EMBL-EBI, Comp. Systems Neurobiology group | Kinetic Simulation Algorithm Ontology (KiSAO) and libKiSAO |
| 2010, Bordeaux, FR | Intern @ Inria/U. of Bordeaux/CNRS joint project-team MAGNOME | Magus genome annotation system |
| 2009, Cambridge, UK | Intern @ EMBL-EBI, Functional Genomics group | Experimental Factor Ontology extension of search in ArrayExpress |
| 2008-10, St. Petersburg, RU | Junior software developer @ SwiftTeams |
| 2011-14 | PhD, Computer Science | University of Bordeaux, FR |
| 2005-10 | Specialist (BSc+MSc), Software Engineering & Math | St. Petersburg State University, RU |
| 2007-09 | Alumna, Software Engineering | Academy of Modern Software Engineering, RU |
