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About

A computer scientist by training, I am applying this knowledge to solve biological problems and am particularly interested in modelling of biological systems, knowledge inference, ontologies and data visualisation.

Events

MCEB 2017

Address: Porquerolles, Hyères, France
2017-06-12 14:00:00 2017-06-16 14:00:00 Europe/Paris MCEB 2017 The huge amount of molecular data available nowadays can help addressing new and essential questions in evolution. Answering these questions require efficient and sound mathematical and computational models and tools. The Mathematical and Computation […] Porquerolles, Hyères, France

MCEB 2018

Address: Le Hameau de l'Etoile, Saint-Martin-de-Londres, France
2018-06-25 09:00:00 2018-06-29 14:00:00 Europe/Paris MCEB 2018 MCEB 2018 Web site The huge amount of molecular data available nowadays can help addressing new and essential questions in evolution. Answering these questions require efficient and sound mathematical and computational models and tools. […] Le Hameau de l'Etoile, Saint-Martin-de-Londres, France

Courses

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

2018-10-22 08:00:00 2018-10-27 19:00:00 Europe/Paris C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018 General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong

Projects

CV

(EN)

Experience

since 2015

Institut Pasteur, Paris, France

  • Phylodynamics, phylogeography.
Research engineer
2014 – 2015

IBGC CNRS UMR 5095/University of Bordeaux, Bordeaux, France

  • Modelling of mitochondrial metabolism.
Postdoctoral researcher
2011 – 2014

Inria/University of Bordeaux/CNRS joint project-team MAGNOME, Bordeaux, France

  • Knowledge-based generalization and visualization for metabolic models. 
Doctoral researcher 
2011

EMBL-EBI, Computational Systems Neurobiology group, Cambridge, UK

Intern
2010

Inria/University of Bordeaux/CNRS joint project-team MAGNOME, Bordeaux, France

  • Magus genome annotation system development.
Intern
2009

EMBL-EBI, Functional Genomics group, Cambridge, UK

Intern
2008 – 2010

SwiftTeams, St. Petersburg, Russia

Junior software developer

Education 

2011 – 2014 University of Bordeaux, France PhD, Computer Science
2005 – 2010 Saint Petersburg State University,
Mathematics and Mechanics Faculty, Russia
Specialist (equiv. to BSc+MSc), Software Engineering
2007 – 2009 Academy of Modern Software Engineering, St. Petersburg, Russia Alumnus, Software Engineering

Publications

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