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About

I am applying my algorithmic and mathematical skills to extend our knowledge of pathogen transmission and evolution.

In my work I develop new phylogenetic methods, tools and mathematical models to answer such questions as: From where was Sars-CoV-2 introduced to France? What is the expected number of cases directly infected by an Ebola-positive individual? Are there onward transmissions of drug-resistant HIV-1 among treatment-naive individuals?

Courses

Phylogenetics, Molecular Epidemiology and Phylodynamics – Montevideo 2021

This course was a part of IRL IFUMI project. Teachers Paul Bastide (PB ‐ IMAG, Montpellier, France) Gonzalo Bello (GB – Instituto Oswaldo Fiocruz, RJ, Brazil) Miraine Davila Felipe (MDF – UTC, Compiègne, France) […]

2021-12-03 09:00:00 2021-12-10 17:00:00 Europe/Paris Phylogenetics, Molecular Epidemiology and Phylodynamics – Montevideo 2021 This course was a part of IRL IFUMI project. Teachers Paul Bastide (PB ‐ IMAG, Montpellier, France) Gonzalo Bello (GB – Instituto Oswaldo Fiocruz, RJ, Brazil) Miraine Davila Felipe (MDF – UTC, Compiègne, France) […] Ave Julio Herrera y Reissig 565, 11300 Montevideo, Departamento de Montevideo, Uruguay

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

Ce cours a pour objectif d’enseigner les bases théoriques et pratiques nécessaires à la conduite d’analyses phylogénétiques. Les sessions théoriques seront consacrées aux bases du domaine (représentation et combinatoire des arbres, modèles d’évolution) et […]

2021-12-13 09:00:00 2021-12-17 19:00:00 Europe/Paris Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation Ce cours a pour objectif d’enseigner les bases théoriques et pratiques nécessaires à la conduite d’analyses phylogénétiques. Les sessions théoriques seront consacrées aux bases du domaine (représentation et combinatoire des arbres, modèles d’évolution) et […] 28 Rue du Dr Roux, Paris, France

Large phylogenies module (COVEME)

“Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology”  (VEME)  workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]

2021-09-02 13:00:00 2021-09-02 18:00:00 Europe/Paris Large phylogenies module (COVEME) “Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology”  (VEME)  workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]

Molecular evolution and phylogenetics module (IBT 2021 H3ABioNet)

The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]

2021-09-28 09:00:00 2021-10-07 14:00:00 Europe/Paris Molecular evolution and phylogenetics module (IBT 2021 H3ABioNet) The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […] Africa

Molecular evolution and phylogenetics module (IBT 2020 H3ABioNet)

The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics  Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]

2020-07-28 09:00:00 2020-08-06 17:00:00 Europe/Paris Molecular evolution and phylogenetics module (IBT 2020 H3ABioNet) The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics  Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […] Africa

minicourse Introduction to Phylogenetics – CentraleSupélec

The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […]

2018-12-18 13:45:00 2018-12-18 17:00:00 Europe/Paris minicourse Introduction to Phylogenetics – CentraleSupélec The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […] Centralesupélec, Rue Joliot Curie, Gif-sur-Yvette, France

Introduction to Molecular Phylogenetics – ENS Paris

Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

2020-12-14 09:00:00 2020-12-18 18:00:00 Europe/Paris Introduction to Molecular Phylogenetics – ENS Paris Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] Ens Ulm, Rue d'Ulm, Paris, France

Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019

Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […]

2019-10-22 09:00:00 2019-10-24 17:00:00 Europe/Paris Behind Evolutionary Trees: Mathematics and Algorithms in Phylogenetics – Montevideo 2019 Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […] Institut Pasteur de Montevideo, Mataojo, Montevideo Montevideo Department, Uruguay

Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019

Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics.  Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […]

2019-10-14 09:00:00 2019-10-18 16:00:00 Europe/Paris Mathematical and Computational methods for Phylogenetics and Evolutionary Epidemiology – Havana 2019 Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics.  Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […] Institute of Tropical Medicine “Pedro Kourí” (IPK), Havana, Cuba

Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation

Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]

2019-10-07 09:30:00 2019-11-11 17:30:00 Europe/Paris Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […] 28 Rue du Dr Roux, Paris, France

Introduction à la phylogénie moléculaire

Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]

2019-02-18 09:00:00 2019-02-22 17:00:00 Europe/Paris Introduction à la phylogénie moléculaire Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […] 28 Rue du Dr Roux, Paris, France

Scientific Programming in Python

The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]

2017-03-06 09:30:00 2017-03-18 17:00:00 Europe/Paris Scientific Programming in Python The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […] 25 Rue du Dr Roux, 75015 Paris, France

Introduction to Python Programming

Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]

2018-06-04 09:30:00 2018-06-08 17:00:00 Europe/Paris Introduction to Python Programming Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […] 25 Rue du Dr Roux, 75015 Paris, France

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

2018-10-22 08:00:00 2018-10-27 19:00:00 Europe/Paris C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018 General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]

2017-12-18 09:30:00 2017-12-22 17:30:00 Europe/Paris INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […] 25-28 Rue du Dr Roux, 75015 Paris, France

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