I am applying my algorithmic and mathematical skills to extend our knowledge of pathogen transmission and evolution.
In my work I develop new phylogenetic methods, tools and mathematical models to answer such questions as: From where was Sars-CoV-2 introduced to France? What is the expected number of cases directly infected by an Ebola-positive individual? Are there onward transmissions of drug-resistant HIV-1 among treatment-naive individuals?
This course was a part of IRL IFUMI project. Teachers Paul Bastide (PB ‐ IMAG, Montpellier, France) Gonzalo Bello (GB – Instituto Oswaldo Fiocruz, RJ, Brazil) Miraine Davila Felipe (MDF – UTC, Compiègne, France) […]
Ce cours a pour objectif d’enseigner les bases théoriques et pratiques nécessaires à la conduite d’analyses phylogénétiques. Les sessions théoriques seront consacrées aux bases du domaine (représentation et combinatoire des arbres, modèles d’évolution) et […]
“Large phylogenies” is a half-day module withing the “Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology” (VEME) workshop. This module aims discusses approaches to reconstruct large trees and to perform downstream cluster analyses on […]
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2021 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
The Molecular evolution and phylogenetics is a 4-session module of the Introduction to Bioinformatics Training 2020 (IBT) organised by Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3ABioNet) consortium. It […]
The ‘Introduction to Phylogenetics’ was taught as a part of a course on mathematical modeling for biology for CentraleSupélec students. It introduced the mathematics and algorithms used for phylogenetic tree inference (with distance and […]
Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
Evolutionary trees are used in many domains, to reveal the function of genes, study the outbreak of epidemics, and set up inventories of biodiversity and its decline, among other things. Phylogenetic software programs for […]
Mathematical and Computational concepts and models are essentials in new developments of the evolutionary studies related to outbreaks of infectious diseases pandemics. Predicting, assessing and controlling potential outbreaks are key aspects of the worldwide […]
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]
The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]
Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]
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