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About

A computer scientist by training, I am applying this knowledge to solve biological problems and am particularly interested in modelling of biological systems, knowledge inference, ontologies and data visualisation.

Courses

INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS

Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]

2017-12-18 09:30:00 2017-12-22 17:30:00 Europe/Paris INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […] 25-28 Rue du Dr Roux, 75015 Paris, France

Scientific Programming in Python

The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]

2017-03-06 09:30:00 2017-03-18 17:00:00 Europe/Paris Scientific Programming in Python The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […] 25 Rue du Dr Roux, 75015 Paris, France

Introduction to Python Programming

Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]

2018-06-04 09:30:00 2018-06-08 17:00:00 Europe/Paris Introduction to Python Programming Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […] 25 Rue du Dr Roux, 75015 Paris, France

C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018

General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]

2018-10-22 08:00:00 2018-10-27 19:00:00 Europe/Paris C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018 General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […] HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong

Projects

CV

(EN)

Experience

since 2015, Paris FR Research Engineer @ Institut Pasteur phylodynamics, phylogeography
2014-15, Bordeaux FR Postdoc @ IBGC CNRS UMR 5095/U. of Bordeaux modelling mitochondrial metabolism
2011-14, Bordeaux FR Doctoral researcher @ Inria/U. of Bordeaux/CNRS joint project-team MAGNOME knowledge-based generalization and visualization for metabolic models
2011, Cambridge, UK Intern @ EMBL-EBI, Comp. Systems Neurobiology group Kinetic Simulation Algorithm Ontology (KiSAO) and libKiSAO
2010, Bordeaux, FR Intern @ Inria/U. of Bordeaux/CNRS joint project-team MAGNOME Magus genome annotation system
2009, Cambridge, UK Intern @ EMBL-EBI, Functional Genomics group Experimental Factor Ontology extension of search in ArrayExpress
2008-10, St. Petersburg, RU Junior software developer @ SwiftTeams

Education 

2011-14 PhD, Computer Science University of Bordeaux, FR
2005-10 Specialist (BSc+MSc), Software Engineering & Math St. Petersburg State University, RU
2007-09 Alumna, Software Engineering Academy of Modern Software Engineering, RU

Publications

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