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  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
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  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
21
Oct 2022
Ending Date
30
Jun 2023
Time
09:30:00
Address
2022-10-21 09:30:00 2023-06-30 18:00:00 Europe/Paris Bioinformatics program for PhD students 2022-2023 This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]

This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design and ethics, plagiarism and good scientific conduct.

Each student then can choose to follow one or several track of  modules — R and Statistics, Bioinformatics, or Image Analysis— according to their background and field of research. A certificate of attendance will be delivered to each student at the end of each track session.

Next key dates :

  • Common core :
    • Session 1 – on campus session – October 21, 2022, from 9:30 AM to 5:30 PM – Room Retrovirus Lwoff building
    • Session 2 – virtual session – February 17, 2023, from 9:30 AM to 5:30 PM – Join Teams Meeting

 

  • R Programming and Statistics: Session 1 – virtual session (on Teams) in French
    • RS1, Introduction to R and Statistics: November 7, 8, 9, 10, 2022 (mornings)
    • RS2, Hypothesis testing: November 14, 15, and 17, 18, 2022 (mornings)
    • RS3, Linear models: November 28, 29 and December 1, 2, 2022 (mornings)
    • RS4, Multivariate analyses: December 5, 6 and 8, 9 2022 (mornings)
  • Image Analysis : Session 1 – on campus (TBD)
    • IA1, Getting started in BioImage Analysis with Fiji: TBD (all day) – room 5 Teams
    • IA2, Using Icy for BioImage Analysis: TBD (morning) – room 5
    • IA3 Advanced Icy features: scripting and protocols: TBD (afternoon) – room 5
    • IA4 Reconstruction of super-resolution images: TBD – room 5 Teams
    • IA5 Using Machine Learning for BioImage analysis: TBD – room 5
  • Bioinformatics : (TBD)
    • B1, Unix basic commands: February 17-18, 2022 (all day)room 5 (on Teams) TBD, 2022 (all day) – on Teams
    • B2, Introduction to sequence analysis: TBD (all day) – room 6
    • B3, Proteomics data analysis: TBD(all day) – room 6
    • B4, Refresher on utilities for HTS data analysis: TBD (all day) – room 6on Teams
    • B5, Basic concepts in HTS data analysis: TBD (all day) – room 6
    • B6, Expression, quantification, differential analysis: TBD (all day) – room 6
    • B7, Variant calling: TBD(all day) – room 6
    • B8, Genotype data and association studies: TBD (all day) – room 6
    • B9, ChiP-seq data analysis: TBD (all day) – room 6
    • B10, Metagenomics: TBD (all day) – room 6
    • B11, Single cell analysis: TBD (all day) – room 6
    • B12, Functional analysis: TBD (all day) – room 6
    • B13, Advanced UNIX commands: TBD (all day) – room 6

 

  • R Programming and Statistics : Session 2 – on campus (Teaching Center) in English
    • RS1, Introduction to R and Statistics: April 3, 4, 5, 2023 (all day) – rooms 2 and 3
    • RS2, Hypothesis testing: April 6, 7, 2023 (all day) – rooms 2 and 3
    • RS3, Linear models: April 11, 12, 2023 (all day) – rooms 2 and 3
    • RS4, Multivariate analyses: April 13, 14, 2023 (all day) – rooms 2 and 3
  • Image Analysis : Session 2 – on campus
    • IA1, Getting started in BioImage Analysis with Fiji: TBD (all day) – room 6
    • IA2, Using Icy for BioImage Analysis: TBD (morning) – room 6
    • IA3 Advanced Icy features: scripting and protocols: TBD (afternoon) – room 6
    • IA4 Reconstruction of super-resolution images: TBD (morning) – room 6
    • IA5 Using Machine Learning for BioImage analysis: TBD (afternoon) – room 6

A detailed description of the next Common Core day is available here. No registration is required. First year PhD students will receive a Teams link from the Graduate Office. For an overview of all the courses and sessions of the program and a detailed description of each module, you can access the Course Content or download the flyer below.

Download (PDF, 539KB)

The bioinformatics program is also a Pasteur course. For more information, follow this link : www.pasteur.fr/en/bioinformatics-program-phd-students

Registration to the modules will open on TBD, and closed (usually) one week before the starting date of each module. If you experience any difficulties with the registration system, please contact the teaching team: bioinfo-program@pasteur.fr.

To register, you need first to create a Moodle account. To do that, fill out and submit the sign-up form. Once you receive your credentials, use the links below to register to the modules that you want to attend:

Course Session Track Room Enrolment Link Course Start Date Enrolment Start Date Enrolment End Date
RS1 Session 1 RS Teams Click to enrol 2021-11-02 2021-10-25 2021-10-26
RS2 Session 1 RS Teams Click to enrol 2021-11-08 2021-10-25 2021-11-01
RS3 Session 1 RS Teams Click to enrol 2021-11-17 2021-10-25 2021-11-10
RS4 Session 1 RS Teams Click to enrol 2021-11-23 2021-10-25 2021-11-16
IA1 Session 1 IA Salle 5 Click to enrol 2022-01-11 2021-10-25 2022-01-04
IA2 Session 1 IA Salle 5 Click to enrol 2022-01-12 2021-10-25 2022-01-05
IA3 Session 1 IA Salle 5 Click to enrol 2022-01-12 2021-10-25 2022-01-05
IA4 Session 1 IA Salle 5 Click to enrol 2022-01-13 2021-10-25 2022-01-06
IA5 Session 1 IA Salle 5 Click to enrol 2022-01-13 2021-10-25 2022-01-06
B1 Session 1 B Teams closed 2022-03 17 2022-01-02 2022-02-10
B2 Session 1 B Salle 6 Closed 2022-02-24 2022-01-02 2022-02-17
B3 Session 1 B Salle 6 Closed 2022-02-28 2022-01-02 2022-02-21
B4 Session 1 B Salle 6 Closed 2022-03-03 2022-01-02 2022-02-24
B5 Session 1 B Salle 6 Closed 2022-03-04 2022-01-02 2022-02-25
B6 Session 1 B Salle 6 Closed 2022-03-21 2022-01-02 2022-03-14
B7 Session 1 B Salle 6 Closed 2022-03-22 2022-01-02 2022-03-15
B8 Session 1 B Salle 6 Closed 2022-03-23 2022-01-02 2022-03-16
B9 Session 1 B Teams Closed 2022-03-24 2022-01-02 2022-03-17
B10 Session 1 B Salle 6 Closed 2022-03-25 2022-01-02 2022-03-18
B11 Session 1 B Salle 6 Closed 2022-03-28 2022-01-02 2022-03-20
B12 Session 1 B Salle 6 Closed 2022-03-30 2022-01-02 2022-03-20
RS1 Session 2 RS Salles 2&3 Closed 2022-04-04 2021-10-25 2022-03-17
RS2 Session 2 RS Salles 2&3 Closed 2022-04-07 2021-10-25 2022-03-17
RS3 Session 2 RS Salles 2&3 Closed 2022-04-11 2021-10-25 2022-03-17
RS4 Session 2 RS Salles 2&3 Closed 2022-04-14 2021-10-25 2022-03-17
B13 Session 1 B Salle 6 Closed 2022-05-19 2022-01-02 2022-05-05
IA1 Session 2 IA Salle 6 Closed 2022-05-31 2021-10-25 2022-05-24
IA2 Session 2 IA Salle 6 Closed 2022-06-01 2021-10-25 2022-05-25
IA3 Session 2 IA Salle 6 Closed 2022-06-01 2021-10-25 2022-05-25
IA4 Session 2 IA Salle 6 Closed 2022-06-02 2021-10-25 2022-05-26
IA5 Session 2 IA Salle 6 Closed 2022-06-02 2021-10-25 2022-05-26