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  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Full Professor
  • Graduate Student
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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Starting Date
03
Nov 2014
Ending Date
31
Dec 2018
Status
Ongoing
Members
4
Structures
18

About

The PIBnet initiative is a large collaborative program that aims at reinforcing microbial strain collection management and characterization approaches and technologies. It involves National Reference Centers, WHO-collaborative centers, biological resources centers and other microbiological expertise laboratories, together with the Center for Bioinformatics, Biostatistics and Integrative Biology and the Biomics center.

Within this large concerted effort, a priority is to promote whole genome sequencing (WGS) as a rapid and accurate characterization approach of microbial agents for population biology, epidemiological surveillance and  outbreak detection. The target volume is 10 000 genomes per year to be sequenced and analyzed within 3 workdays. On the bioinformatics level, this requires implementing fast data treatment tools, genotyping strategies and automated methods to extract medically relevant information from genomic sequences (resistome, virulome). 

 More information on the PIBnet initiative.

Fundings