Hugo Varet

May 2021

1ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2

Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers thématiques en session […]

Rachel Legendre

Hugo Varet

Vincent Guillemot

2021-05-25 09:00:00 2021-05-28 18:00:00 Europe/Paris 1ème Ecole de Bioinformatique AVIESAN – IFB – INSERM Niveau 2 Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour de trois ateliers thématiques en session […] Roscoff, France

09:30

Oct 2020

Bioinformatics program for PhD students 2020-2021

This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]

Image Analysis Hub

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Computational Biology

Center for Technological Resources and Research

2020-10-15 09:30:00 2021-06-03 17:00:00 Europe/Paris Bioinformatics program for PhD students 2020-2021 This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […] 25-28 Rue du Dr Roux, 75015 Paris, France

Jan 2017

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]

Stéphane Descorps-Declère

2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France

May 2016

Morning session – Introduction to NGS data analysis

The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]

Claudia Chica

Frédéric Lemoine

Jack Christophe Cossec

2016-05-10 09:00:00 2016-06-28 12:00:00 Europe/Paris Morning session – Introduction to NGS data analysis The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […] 28 Rue du Dr Roux, Paris, France

Mar 2016

Morning session – Data analysis using R

This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […]

2016-03-08 09:00:00 2016-04-12 12:00:00 Europe/Paris Morning session – Data analysis using R This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […] 28 Rue du Docteur Roux, Paris, France

Oct 2017

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Marie-Agnès Dillies

Stéphane Descorps-Declère

2017-10-16 09:00:00 2017-11-17 12:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

Oct 2018

Introduction to Data Analysis

2018-10-22 09:00:00 2018-11-20 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Dr Roux, Paris, France

Jan 2018

Introduction to Data Analysis

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Marie-Agnès Dillies

Stéphane Descorps-Declère

Anne Biton

Félix Cheysson

Christophe Becavin

2018-01-08 09:00:00 2018-02-02 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

18:00

Nov 2018

7ème école de bioinformatique AVIESAN-IFB

Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école […]

Rachel Legendre

Hugo Varet

Adrien Pain

2018-11-25 18:00:00 2018-11-30 16:00:00 Europe/Paris 7ème école de bioinformatique AVIESAN-IFB Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école […] Station Biologique de Roscoff, Place Georges Teissier, Roscoff, France

18:00

Nov 2017

6ème école de bioinformatique AVIESAN-IFB

Objectifs La formation s’adresse à des chercheurs et ingénieurs directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école s’adresse aux nouveaux enjeux technologiques: elle inclura notamment une ouverture aux technologies […]

2017-11-12 18:00:00 2017-11-17 15:00:00 Europe/Paris 6ème école de bioinformatique AVIESAN-IFB Objectifs La formation s’adresse à des chercheurs et ingénieurs directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école s’adresse aux nouveaux enjeux technologiques: elle inclura notamment une ouverture aux technologies […] Station Biologique de Roscoff, Place Georges Teissier, Roscoff, France

17:00

Nov 2016

5ème école de bioinformatique AVIESAN-IFB

Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […]

Expertise group : SysBio – System Bioinformatics

2016-11-20 17:00:00 2016-11-25 17:00:00 Europe/Paris 5ème école de bioinformatique AVIESAN-IFB Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […] Station biologique de Roscoff, Place Georges Teissier, Roscoff, France

Oct 2016

Training: analysis of the transcriptome by RNAseq

The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […]

Olivia Doppelt-Azeroual

Fabien Mareuil

Natalia Pietrosemoli

2016-10-10 09:00:00 2016-10-14 17:00:00 Europe/Paris Training: analysis of the transcriptome by RNAseq The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […] 28 Rue du Docteur Roux, Paris, France

Projects

12 Members

Insights into amebiasis using a human 3D-intestinal model (ANR-14-IFEC-0001-02)

Nancy Guillen (PI)

This project is a part of the international Infect-Era program, AMOEBAC: Entamoeba histolytica-bacterium interaction and the role of this interaction in intestinal pathogenesis (http://www.infect-era.eu/2nd-call-2014) The aim of this investigation is to understand the induced […]

Understanding the Pathogenicity of Entamoeba Using Comparative Transcriptomics and Phylogenomics – GENAMIBE. Project-ANR-10-GENM-0011

Nancy Guillen (PI)

Entamoeba histolytica is a protozoan parasite and an amitochondriate pathogenic amoeba, which may cause dysentery and liver abscess in humans (i.e. amoebiasis). Differential pathogenicity is observed among E. histolytica strains: strain HM1:IMSS is virulent […]

3 Members

Deciphering the mechanisms of infection of lyssaviruses at the cellular level in bats

Laurent Dacheux (PI)

In collaboration with the Institute of Vertebrate Biology in Brno, Czech Republic (Dr. Natalia Martinkova and Markéta Harazim), the aim of this project is to study the mechanisms of lyssavirus infection in bats based […]

Deciphering the virulence factors of Mycobacterium abscessus activated in the presence of environmental amoebae

Jean-Yves Coppee (PI)

Mycobacterium abscessus (M. abs) is an emerging pathogen causing lung infections in cystic fibrosis patients. Although the environmental reservoir of M. abs is currently unknown, M. abs possesses a gene pool dedicated to a […]

8 Members

Transcriptome of different quiescence sub-states of neural stem cells in adult zebrafish

Laure Bally-Cuif (PI)

Vertebrate adult neural stem cells (NSCs) are generally quiescent, and the frequency of their cell cycle re-entry (“activation”) conditions their lifespan. Little is known of the molecular pathways controlling the NSC quiescence/activation balance. We […]

The role of lncRNA H19 in Thymopoiesis

Ana Cumano (PI)

“The thymus is a specialized organ that provides a unique environment for T cell development and differentiation. The study the thymus-settling progenitors (TSPs) and how they differentiate is important for the characterization of the […]

Gene expression profiling in germinal center B cells

Paulo Vieira (PI)

Germinal centers (GC) are essential for an effective humoral immune response. The GC provides an environment that stimulates B cells to proliferate in response to antigens and accumulate somatic mutations in immunoglobulin (Ig) genes, […]

Anastasia V. Komarova (PI)

12 Members

HIV signature on RIG-I-like receptors

The pathogenesis of HIV infection, and in particular the development of immunodeficiency, remains incompletely understood. During HIV infection both innate and adaptive immune responses are raised, but they appear to be insufficient or too […]

5 Members

Dynamic regulation of chromatin and transcription by HP1 Heterochromatin Proteins in relationship with RNA.

Christophe Rachez (PI)

The three HP1 (Heterochromatin Protein 1), HP1a, HP1b, and HP1g proteins are epigenetic markers of heterochromatin, the condensed, repressed form of chromatin. They are typically known to associate to the di-/tri-methylated lysine 9 of […]

7 Members

Functional characterization of mosquito genes involved in dengue virus transmission identified by RNA-seq at the individual midgut level

Louis Lambrechts (PI)

Dengue is the most rapidly expanding, globally dominant arthropod-borne (arbo) viral disease. It affects close to 400 million people each year in more than 125 countries. Recent reports of autochtonous cases in Southern France […]

5 Members

Régulation transcriptionnelle par l’Enhancer de Trithorax et Polycomb Corto et la Protéine Ribosomique L12.

(PI)

Il est aujourd’hui connu que les protéines ribosomiques ont des fonctions extra-ribosomiques, et qu’en particulier, certaines d’entre elles contrôlent la transcription. Nous avons montré que, chez la drosophile, RPL12 interagit avec le facteur épigénétique […]

Software

8 Members

SARTools

Hugo Varet (PI)

SARTools is a R package dedicated to the differential analysis of RNA-seq data. It provides tools to generate descriptive and diagnostic graphs, to run the differential analysis with one of the well known DESeq2 […]

Tools

Tool