Hugo Varet is a biostatistician engineer from the Ensai (Ecole Nationale de la Statistique et de l’Analyse de l’Information) and has been recruited in 2013 by the Transcriptome & Epigenome Platform of the Biomics Pole. Late 2014 he obtained a permanent position at the Bioinformatics & Biostatistics Hub and has continued his work on the analyses of RNA-Seq data. In January 2021 he joined the newly created Metabolomics Core Facility in order to set up bioinformatics analyses and help in the development of the platform.
Courses
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
Morning session – Data analysis using R
This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […]
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Introduction to Data Analysis
This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
7ème école de bioinformatique AVIESAN-IFB
Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école […]
6ème école de bioinformatique AVIESAN-IFB
Objectifs La formation s’adresse à des chercheurs et ingénieurs directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école s’adresse aux nouveaux enjeux technologiques: elle inclura notamment une ouverture aux technologies […]
5ème école de bioinformatique AVIESAN-IFB
Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […]
Training: analysis of the transcriptome by RNAseq
The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […]
Projects
Software
Tools
Former Teams
CV
Professional experience:
- 2013-Present: Institut Pasteur, Paris (75), France
- 2021-Present: Metabolomics Core Facility – Center for Technological Resources and Research
- 2014-Present: Bioinformatics & Biostatistics Hub – Department of Computational Biology
- 2013-2019: Transcriptome & Epigenome Platform – Biomics Pole – Center for Technological Resources and Research
- 2012-2013: Necker Hospital and Paris Descartes University – Biostatistics & Medical Informatics Service, Paris (75), France
- 2011-2012: Henri Mondor Hospital – Clinical Research Unit, Créteil (94), France
Education:
- 2008-2011: National School For Statistics and Information Analysis, Rennes (35), France
- 2006-2008: Intensive general program for Top Schools in Mathematics & Physics, Le Mans (72), France
Publications
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2021Tissue damage induces a conserved stress response that initiates quiescent muscle stem cell activation., Cell Stem Cell 2021 Feb; (): .
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2021Aspergillus fumigatus, One Uninucleate Species with Disparate Offspring., J Fungi (Basel) 2021 Jan; 7(1): .
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2021Characterization of a Four-Component Regulatory System Controlling Bacteriocin Production in Streptococcus gallolyticus, mBio. 2021 Jan 5;12(1):e03187-20..
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20204-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans., Nucleic Acids Res 2020 Dec; 48(21): 12102-12115.
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2020Functionally distinct resident macrophage subsets differentially shape responses to infection in the bladder., Sci Adv 2020 Nov; 6(48): .
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2020Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2., Microb Genom 2020 Oct; (): .
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2020The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress., PLoS Pathog 2020 Oct; 16(10): e1008904.
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2020Cellular and molecular profiling of T-cell subsets at the onset of human acute GVHD., Blood Adv 2020 Aug; 4(16): 3927-3942.
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2020Insights into amebiasis using a human 3D-intestinal model., Cell Microbiol 2020 Aug; 22(8): e13203.
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2020Leishmania amazonensis Subverts the Transcription Factor Landscape in Dendritic Cells to Avoid Inflammasome Activation and Stall Maturation, Front Immunol . 2020 Jun 9;11:1098.
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