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About

Hugo Varet is a biostatistician engineer from the Ensai (Ecole Nationale de la Statistique et de l’Analyse de l’Information) and has been recruited by the hub of the C3BI (Center of Bioinformatics, Biostatistics and Integrative Biology) to work at the Transcriptome & Epigenome Platform. He is in charge of the statistical analyses of the RNA-Seq data produced by the platform and develops R pipelines that help in this task. One of them is named SARTools and is available on GitHub: https://github.com/PF2-pasteur-fr/SARTools.

Courses

18:00
25
Nov 2018
Course

7ème école de bioinformatique AVIESAN-IFB

Initiation au traitement des données de génomique obtenues par séquençage à haut débit   Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école […]
Rachel Legendre
Hugo Varet
Adrien Pain
Violaine Saint-André
2018-11-25 18:00:00 2018-11-30 16:00:00 Europe/Paris 7ème école de bioinformatique AVIESAN-IFB Initiation au traitement des données de génomique obtenues par séquençage à haut débit   Objectifs La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école […] Station Biologique de Roscoff, Place Georges Teissier, Roscoff, France
18:00
12
Nov 2017
Course

6ème école de bioinformatique AVIESAN-IFB

Objectifs La formation s’adresse à des chercheurs et ingénieurs directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école s’adresse aux nouveaux enjeux technologiques: elle inclura notamment une ouverture aux technologies […]
Rachel Legendre
Hugo Varet
Adrien Pain
Violaine Saint-André
2017-11-12 18:00:00 2017-11-17 15:00:00 Europe/Paris 6ème école de bioinformatique AVIESAN-IFB Objectifs La formation s’adresse à des chercheurs et ingénieurs directement impliqués dans des projets “Next Generation Sequencing” (NGS). Cette édition de l’école s’adresse aux nouveaux enjeux technologiques: elle inclura notamment une ouverture aux technologies […] Station biologique de Roscoff, Place Georges Teissier, Roscoff, France
17:00
20
Nov 2016
Course

5ème école de bioinformatique AVIESAN-IFB

Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […]
Rachel Legendre
Hugo Varet
Damien Mornico
Adrien Pain
2016-11-20 17:00:00 2016-11-25 17:00:00 Europe/Paris 5ème école de bioinformatique AVIESAN-IFB Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […] Station biologique de Roscoff, Place Georges Teissier, Roscoff, France
09:00
10
Oct 2016
Course

Training: analysis of the transcriptome by RNAseq

The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […]
Biomics
Transcriptome and EpiGenome
Genomes and Genetics
Center for Innovation & Technological Research
Caroline Proux
Odile Sismeiro
Jean-Yves Coppee
Marie-Agnès Dillies
Hugo Varet
Rachel Legendre
Olivia Doppelt-Azeroual
Fabien Mareuil
Natalia Pietrosemoli
2016-10-10 09:00:00 2016-10-14 17:00:00 Europe/Paris Training: analysis of the transcriptome by RNAseq The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […] 28 Rue du Docteur Roux, Paris, France

Projects

project
Ongoing
5 Members

Entamoeba histolytica – bacterium interaction and the role of this interaction in intestinal pathogenesis

Nancy Guillen (PI)

Amoebiasis, a global medical problem, is a parasitic infection of the intestines caused by the protozoan Entamoeba histolytica. The consortium AMOEBAC, headed by Dr Serge Ankri (Technion Israel Institute of Technology, Israel) aims to […]
project
Ongoing
6 Members

Deciphering the virulence factors of Mycobacterium abscessus activated in the presence of environmental amoebae

Jean-Yves Coppee (PI)

Mycobacterium abscessus (M. abs) is an emerging pathogen causing lung infections in cystic fibrosis patients. Although the environmental reservoir of M. abs is currently unknown, M. abs possesses a gene pool dedicated to a […]
project
Ongoing
8 Members

Transcriptome of different quiescence sub-states of neural stem cells in adult zebrafish

Laure Bally-Cuif (PI)

Vertebrate adult neural stem cells (NSCs) are generally quiescent, and the frequency of their cell cycle re-entry (“activation”) conditions their lifespan. Little is known of the molecular pathways controlling the NSC quiescence/activation balance. We […]
project
Ongoing
6 Members

The role of lncRNA H19 in Thymopoiesis

Ana Cumano (PI)

“The thymus is a specialized organ that provides a unique environment for T cell development and differentiation. The study the thymus-settling progenitors (TSPs) and how they differentiate is important for the characterization of the […]
project
Ongoing
6 Members

Interactions between HP1 proteins and RNA

Christian Muchardt (PI)

The three HP1 proteins (Heterochromatin Protein 1 alpha, -beta, -gamma) are epigenetic markers of heterochromatin, the condensed, repressed form of chromatin. They are typically known to associate to the di-/tri-methylated lysine 9 of histone […]
project
Ongoing
6 Members

Gene expression profiling in germinal center B cells

Paulo Vieira (PI)

Germinal centers (GC) are essential for an effective humoral immune response. The GC provides an environment that stimulates B cells to proliferate in response to antigens and accumulate somatic mutations in immunoglobulin (Ig) genes, […]
project
Ongoing
12 Members

HIV signature on RIG-I-like receptors

Anastasia V. Komarova (PI)

The pathogenesis of HIV infection, and in particular the development of immunodeficiency, remains incompletely understood. During HIV infection both innate and adaptive immune responses are raised, but they appear to be insufficient or too […]
project
Ongoing
7 Members

Functional characterization of mosquito genes involved in dengue virus transmission identified by RNA-seq at the individual midgut level

Louis Lambrechts (PI)

Dengue is the most rapidly expanding, globally dominant arthropod-borne (arbo) viral disease. It affects close to 400 million people each year in more than 125 countries. Recent reports of autochtonous cases in Southern France […]
project
Completed
5 Members

Régulation transcriptionnelle par l’Enhancer de Trithorax et Polycomb Corto et la Protéine Ribosomique L12.

Frédérique Peronnet (PI)

Il est aujourd’hui connu que les protéines ribosomiques ont des fonctions extra-ribosomiques, et qu’en particulier, certaines d’entre elles contrôlent la transcription. Nous avons montré que, chez la drosophile, RPL12 interagit avec le facteur épigénétique […]

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