I started as a biologist, then oriented my career toward image analysis and programming. Today, I have a balanced profile between biology/image acquisition, image analysis/programming and communication/collaboration. I like working in highly collaborative environments at the frontier between different disciplines. I enjoy a lot finding creative solutions to image and data analysis questions, that require me to extend my knowledge, improve my programming skills and raise my curiosity to new scientific fields.
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Timeline
Courses
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Bioinformatics and Biostatistics HUB
Image Analysis Hub
Expertise group : SysBio – System Bioinformatics
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Research and Resource Centre for Scientific Informatics
Emmanuelle Permal
Emeline Perthame
Jean-Yves Tinevez
Blaise Li
Sébastien MELLA
Anđela Davidović
Pascal Campagne
Thomas Obadia
Elise Jacquemet
Violaine Saint-André
Hanna Julienne
Thomas Bigot
Frédéric Lemoine
Nicolas Maillet
Matthew Albert
Claudia Chica
Stéphane Dallongeville
Julien Guglielmini
Vincent Guillemot
Bernd Jagla
Vincent Laville
Benoît Lelandais
Gaëlle Letort
Yann Loe-Mie
Hélène Lopez-Maestre
Marion Louveaux
Olivier Mirabeau
Damien Mornico
Adrien Pain
Natalia Pietrosemoli
Stéphane Rigaud
Hugo Varet
Amaury Vaysse
Minh-Son Phan
Marvin Albert
2022-10-21 09:30:00
2023-06-30 18:00:00
Europe/Paris
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Webinar d’introduction à Icy pour le rtMFM
Analyses d’images avec le logiciel Icy https://youtu.be/mmFW_qufRa8
2021-01-12 14:00:00
2021-01-12 18:00:00
Europe/Paris
Webinar d’introduction à Icy pour le rtMFM
Analyses d’images avec le logiciel Icy https://youtu.be/mmFW_qufRa8
Pasteur Institute, Rue du Docteur Roux, Paris, France
Webinar d’introduction à Icy pour la NEUBIAS Academy
Introduction 0:01 Part I: “Icy, a bioimage analysis software bridging people across disciplines” 5:10 Part 2:”Protocols, making quantitative analyses accessible to everyone” 29:18 Part 3:”Community, get involved!” 57:35 ======== Content: Icy (http://icy.bioimageanalysis.org/) is a […]
2020-04-26 14:00:00
2020-04-26 18:00:00
Europe/Paris
Webinar d’introduction à Icy pour la NEUBIAS Academy
Introduction 0:01 Part I: “Icy, a bioimage analysis software bridging people across disciplines” 5:10 Part 2:”Protocols, making quantitative analyses accessible to everyone” 29:18 Part 3:”Community, get involved!” 57:35 ======== Content: Icy (http://icy.bioimageanalysis.org/) is a […]
Pasteur Institute, Rue du Docteur Roux, Paris, France
Former Teams
CV
Professionnal experience
2019 – today: Application specialist for the bioimage analysis software Icy, Bioimage Analysis Unit, Institut Pasteur, France.
2016 – 2019: Postdoctoral researcher. “Study of the morphogenesis of Arabidopsis thaliana lateral root using light sheet microscopy”. Ruprecht-Karls-Universität Heidelberg, Germany.
2016: Postdoctoral researcher (EMBO short term fellowship – 3 months). “Characterisation of the cortical microtubules in the embryo of Arabidopsis thaliana”. Wageningen University & Research, Netherlands.
2012 – 2015: PhD on “Contribution of mechanical stress to cell division plane orientation at the shoot apical meristem of Arabidopsis thaliana”. ENS Lyon. France.
Grants
2016: EMBO Short term fellowship – 3 months.
2012: PhD grant from Région Rhônes-Alpes – 3 years.
Education
2012 – 2015: ENS Lyon, Lyon. PhD thesis in Life sciences.
2011 – 2012: AgroParisTech, Paris. Master 2 degree in Plant sciences.
2009 – 2012: Agrocampus Ouest, Rennes. Engineering degree (= Master 2) in Agronomy.