Minh-Son Phan has a background in computer science with specialities in image analysis and computational geometry. He finished his PhD at ICUBE, University of Strasbourg for the studies of 2D & 3D tomographic reconstruction. He then joined LOB, Ecole Polytechnique where he worked in quantitative image analysis from largescale multicolor image volume of mouse brain cortex. He is also the developer of GeNePy3D-a quantitative geometry python toolbox for large scale bioimaging. He is now the research engineer at Institut Pasteur Paris, jointly working in the Image Analysis Hub and the Dynamics of Developmental Decisions in Drosophila Unit. He is fascinated by using machine learning and deep learning to address various issues in image analysis.
About
Courses
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Bioinformatics and Biostatistics HUB
Image Analysis Hub
Expertise group : SysBio – System Bioinformatics
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Research and Resource Centre for Scientific Informatics
Emmanuelle Permal
Emeline Perthame
Jean-Yves Tinevez
Blaise Li
Sébastien MELLA
Anđela Davidović
Pascal Campagne
Thomas Obadia
Elise Jacquemet
Violaine Saint-André
Hanna Julienne
Thomas Bigot
Frédéric Lemoine
Nicolas Maillet
Matthew Albert
Claudia Chica
Stéphane Dallongeville
Julien Guglielmini
Vincent Guillemot
Bernd Jagla
Vincent Laville
Benoît Lelandais
Gaëlle Letort
Yann Loe-Mie
Hélène Lopez-Maestre
Marion Louveaux
Olivier Mirabeau
Damien Mornico
Adrien Pain
Natalia Pietrosemoli
Stéphane Rigaud
Hugo Varet
Amaury Vaysse
Minh-Son Phan
Marvin Albert
2022-10-21 09:30:00
2023-06-30 18:00:00
Europe/Paris
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Publications
Download-
2022HaloTag-based reporters for sparse labeling and cell tracking., Fly (Austin) 2022 Dec; 16(1): 360-366.
-
2022nAdder: A scale-space approach for the 3D analysis of neuronal traces., PLoS Comput Biol 2022 07; 18(7): e1010211.
-
2022TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines., Nat Methods 2022 Jun; (): .
-
2020GeNePy3D: a quantitative geometry python toolbox for bioimaging., F1000Res 2020 ; 9(): 1374.