I joined the Hub Team @ Pasteur as a Bioinformatician in February 2021
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Connections
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Timeline
Courses
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
Bioinformatics and Biostatistics HUB
Image Analysis Hub
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Research and Resource Centre for Scientific Informatics
Emeline Perthame
Emmanuelle Permal
Marvin Albert
Jean-Yves Tinevez
Victoire Baillet
Thomas Bigot
Pascal Campagne
Elodie Chapeaublanc
Claudia Chica
Anđela Davidović
Stephan Fischer
Amine Ghozlane
Julien Guglielmini
Vincent Guillemot
Elise Jacquemet
Bernd Jagla
Hanna Julienne
Julia Kende
Vincent Laville
Frédéric Lemoine
Gaëlle Letort
Blaise Li
Yann Loe-Mie
Hélène Lopez-Maestre
Nicolas Maillet
Sébastien MELLA
Juliette Meyer
Olivier Mirabeau
Damien Mornico
Thomas Obadia
Adrien Pain
Minh-Son Phan
Natalia Pietrosemoli
Stéphane Rigaud
Violaine Saint-André
Rachel Torchet
Hugo Varet
Amaury Vaysse
Laura Xénard
2023-10-23 09:30:00
2024-06-28 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
25-28 Rue du Docteur Roux, Paris, France
PHINDaccess – Comparative Genomics
Comparative genomics is a field of biological research in which a variety of tools are used to compare genome sequences of different species. By carefully comparing characteristics that define various organisms, researchers can pinpoint […]
2022-03-16 09:00:00
2022-03-18 17:00:00
Europe/Paris
PHINDaccess – Comparative Genomics
Comparative genomics is a field of biological research in which a variety of tools are used to compare genome sequences of different species. By carefully comparing characteristics that define various organisms, researchers can pinpoint […]
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Bioinformatics and Biostatistics HUB
Image Analysis Hub
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Research and Resource Centre for Scientific Informatics
Emmanuelle Permal
Emeline Perthame
Jean-Yves Tinevez
Blaise Li
Sébastien MELLA
Anđela Davidović
Pascal Campagne
Thomas Obadia
Elise Jacquemet
Violaine Saint-André
Hanna Julienne
Thomas Bigot
Frédéric Lemoine
Nicolas Maillet
Claudia Chica
Julien Guglielmini
Vincent Guillemot
Bernd Jagla
Vincent Laville
Benoît Lelandais
Gaëlle Letort
Yann Loe-Mie
Hélène Lopez-Maestre
Marion Louveaux
Olivier Mirabeau
Damien Mornico
Adrien Pain
Natalia Pietrosemoli
Stéphane Rigaud
Hugo Varet
Amaury Vaysse
Minh-Son Phan
Marvin Albert
2022-10-21 09:30:00
2023-06-30 18:00:00
Europe/Paris
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
25-28 Rue du Docteur Roux, Paris, France
Former Teams
CV
Experiences
2021
Research engineer
Pasteur (HUB)
Pasteur (HUB)
2019
Bioinformatician engineer : Bulk and single cell RNAseq data analyses
Panther (U 1234) & Litis, Université de Rouen, France
Panther (U 1234) & Litis, Université de Rouen, France
2018
Data Scientist – Bioinformatician : Automatic data extraction from scientific papers
omicX, Rouen, France
omicX, Rouen, France
2017
Bioinformatician : Transcriptomic profiling of immune cells in tumor environment
CRCL – Centre Léon Bérard, Lyon France, France
CRCL – Centre Léon Bérard, Lyon France, France
Education
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20172013 – 2017 PhD in Bioinformatics : Analyses and method developmment for sequencing data
Teams : Baobab – Transposable Elements, Laboratoire de Biométrie et Biologie Evolutive (LBBE), Université de Lyon 1, France
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20132010 – 2013 M.Sc. in Bioinformatics and Modelling
Engineering school, INSA Lyon, France -
20102008 – 2010 Preparatory Level in an international class (Eurinsa)
Engineering school, INSA Lyon, France
Publications
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2025Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti., BMC Biol 2025 May; 23(1): 130.
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2025IL-23 tunes inflammatory functions of human mucosal-associated invariant T cells., iScience 2025 Feb; 28(2): 111898.
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2024Fatal Lassa fever in cynomolgus monkeys is associated with systemic viral dissemination and inflammation., PLoS Pathog 2024 Dec; 20(12): e1012768.
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2023Rapid protection induced by a single-shot Lassa vaccine in male cynomolgus monkeys., Nat Commun 2023 Mar; 14(1): 1352.
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2023Throughout in vitro first spermatogenic wave: Next-generation sequencing gene expression patterns of fresh and cryopreserved prepubertal mice testicular tissue explants., Front Endocrinol (Lausanne) 2023 ; 14(): 1112834.
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2017Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids., Genome Biol Evol 2017 Jun; 9(6): 1450-1470.
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2017TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes., Nucleic Acids Res 2017 Feb; 45(4): e17.
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2017Identification of misexpressed genetic elements in hybrids between Drosophila-related species., Sci Rep 2017 Jan; 7(): 40618.
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2017Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads., Algorithms Mol Biol 2017 ; 12(): 2.
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2016SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence., Nucleic Acids Res 2016 Nov; 44(19): e148.
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