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© Research

Member: Research Engineer

Emmanuelle Permal

• Bioinformatics and Biostatistics HUB • Expertise group: Genomics • Genetics of Macromolecular Interactions • Quality Control at the Ribosome

Laboratory: Genetics of Macromolecular Interactions

Platform: Bioinformatics and Biostatistics HUB

Group: Quality Control at the Ribosome

Group: Expertise group: Genomics

PM RG

Scientific Fields

Diseases

Organisms

Applications

Technique

Scientific Fields

Scientific computing

Organisms & Organs

Candida albicans
Drosophila melanogaster (Fruit
Saccharomyces cerevisiae

Technique

Bioinformatics Data Analysis a
Genome analysis
Program development
RNA structure analysis
Sequence analysis
Workflow and pipeline developm

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11 Publications

About

I joined the Bioinformatics and Biostatistics Hub at Institut Pasteur in January 2020 as Research engineer. I am member of the Geno group and the GIM laboratory where I do NGS analysis. In 2020 and 2021, I was involved in two Covid-19 project for data curation and insertion for GISAID and CNR.

I am also involved in the Ph.D bioinformatics program.

Courses

Bioinformatics program for PhD students 2022-2023

This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]

Bioinformatics and Biostatistics HUB

Image Analysis Hub

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Research and Resource Centre for Scientific Informatics

Emmanuelle Permal

Emeline Perthame

Jean-Yves Tinevez

Sébastien MELLA

Anđela Davidović

Pascal Campagne

Elise Jacquemet

Violaine Saint-André

Frédéric Lemoine

Nicolas Maillet

Stéphane Dallongeville

Julien Guglielmini

Vincent Guillemot

Vincent Laville

Benoît Lelandais

Hélène Lopez-Maestre

Marion Louveaux

Olivier Mirabeau

Natalia Pietrosemoli

Stéphane Rigaud

2022-10-21 09:30:00 2023-06-30 18:00:00 Europe/Paris Bioinformatics program for PhD students 2022-2023 This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]

Bioinformatics program for PhD students 2021-2022

This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]

Bioinformatics and Biostatistics HUB

Image Analysis Hub

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Computational Biology

Center for Technological Resources and Research

Marie-Agnès Dillies

Jean-Yves Tinevez

Vincent Guillemot

Emmanuelle Permal

2021-10-21 09:30:00 2022-06-02 17:00:00 Europe/Paris Bioinformatics program for PhD students 2021-2022 This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […] 28 Rue du Docteur Roux, Paris, France

Projects

Cytoplasmic mRNA degradation pathways

Micheline Fromont-Racine (PI)

Cellular mRNAs are subjected to a balance between synthesis and degradation, which determines the shape of the transcriptome and greatly participates to protein homeostasis. In addition to the general degradation pathways, which ensure the […]

Translation and Ribosome rescue

Micheline Fromont-Racine (PI)

Translation involves four main steps: initiation, elongation, termination and recycling. Each step is highly controlled and can be modulated depending on the mRNA characteristics. The first step begins with the binding of eIF3 to […]

CV

Education

2007 PhD in Bioinformatics, IRIC, RNA Engineering lab, Université de Montréal
2001 Graduated from the DEA Genomics and Informatics, Université de Rennes I
1999 Graduated from the Master Molecular Biology and Molecular Genetics, Université Paris XI

Professional experiences

2020 – present Research Engineer, HUB, Institut Pasteur
2012 – 2014 Post-Doc in Bioinformatics, GenPhyse, INRA Toulouse
2011 – 2012 Post-Doc in Bioinformatics, Fungal Biology and pathogenicity, Institut Pasteur
2008 – 2010 Post-Doc in Bioinformatics, URGI, INRA Versailles

Publications

Download

2023

Audebert L, Feuerbach F, Decourty L, Namane A, Permal E, Badis G, Saveanu C, Deadenylation rate is not a major determinant of RNA degradation in yeast, bioRxiv, 2023.01.16.524186.
2018

Legrand M, Bachellier-Bassi S, Lee KK, Chaudhari Y, Tournu H, Arbogast L, Boyer H, Chauvel M, Cabral V, Maufrais C, Nesseir A, Maslanka I, Permal E, Rossignol T, Walker LA, Zeidler U, Znaidi S, Schoeters F, Majgier C, Julien RA, Ma L, Tichit M, Bouchier C, Van Dijck P, Munro CA, d'Enfert C, Erratum: Generating genomic platforms to study Candida albicans pathogenesis, Nucleic Acids Res. 2018 09;46(16):8664.
2018

Legrand M, Bachellier-Bassi S, Lee KK, Chaudhari Y, Tournu H, Arbogast L, Boyer H, Chauvel M, Cabral V, Maufrais C, Nesseir A, Maslanka I, Permal E, Rossignol T, Walker LA, Zeidler U, Znaidi S, Schoeters F, Majgier C, Julien RA, Ma L, Tichit M, Bouchier C, Van Dijck P, Munro CA, d'Enfert C, , Generating genomic platforms to study Candida albicans pathogenesis., Nucleic Acids Res 2018 08; 46(14): 6935-6949.
2018

Ropars J, Maufrais C, Diogo D, Marcet-Houben M, Perin A, Sertour N, Mosca K, Permal E, Laval G, Bouchier C, Ma L, Schwartz K, Voelz K, May RC, Poulain J, Battail C, Wincker P, Borman AM, Chowdhary A, Fan S, Kim SH, Le Pape P, Romeo O, Shin JH, Gabaldon T, Sherlock G, Bougnoux ME, d'Enfert C, Gene flow contributes to diversification of the major fungal pathogen Candida albicans, Nat Commun 2018 06;9(1):2253.
2013

Angebault C, Djossou F, Abélanet S, Permal E, Ben Soltana M, Diancourt L, Bouchier C, Woerther PL, Catzeflis F, Andremont A, d'Enfert C, Bougnoux ME, Candida albicans is not always the preferential yeast colonizing humans: a study in Wayampi Amerindians, J. Infect. Dis. 2013 Nov;208(10):1705-16.
2012

Permal E, Flutre T, Quesneville H, Roadmap for annotating transposable elements in eukaryote genomes, Methods Mol. Biol. 2012;859:53-68.
2011

Stanojcic S, Gimenez S, Permal E, Cousserans F, Quesneville H, Fournier P, d'Alençon E, Correlation of LNCR rasiRNAs expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperda, PLoS ONE 2011;6(9):e24746.
2011

Flutre T, Permal E, Quesneville H, In search of lost trajectories: Recovering the diversification of transposable elements, Mob Genet Elements 2011 Jul;1(2):151-154.
2010

d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, Flutre T, Couloux A, East P, Gordon K, Mita K, Quesneville H, Fournier P, Feyereisen R, Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements, Proc. Natl. Acad. Sci. U.S.A. 2010 Apr;107(17):7680-5.
2010

, Genome sequence of the pea aphid Acyrthosiphon pisum, PLoS Biol. 2010 Feb;8(2):e1000313.
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View full list of publications

Published on: 07 Jan 2020 • Modified on: 13 Jan 2022

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