Initially trained in evolutionary and environmental sciences, I studied population genetics and micro-evolutionary processes in a number of postdoctoral research projects. I recently joined the C3BI-Hub at the Institut Pasteur, where I work on various aspects involving Biostatistics and the analysis of genetic data.
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
Plasmodium falciparum evolution under artemisinin pressure
Artemisinins, combined with another antimalarial, are the core component of Artemisinin-based Combination Therapies (ACTs): the front-line antimalarial drugs. Today the fight against malaria faces to the emergence of resistance of the parasite Plasmodium falciparum […]
SHADE : SHiny Application for Designing Experiments
SHADE is a Shiny application for providing support to research teams in refining their experiments designs. In particular, SHADE was designed to help biologist with nested designs, raising awareness on common statistical biases. It […]
2021Release of infectious virus and cytokines in nasopharyngeal swabs from individuals infected with non-alpha or alpha SARS-CoV-2 variants: an observational retrospective study., EBioMedicine 2021 Nov; 73(): 103637.
2021Host genetic control of natural killer cell diversity revealed in the Collaborative Cross., Proc Natl Acad Sci U S A 2021 Mar; 118(10): .
2021Altered Immune Phenotypes and HLA-DQB1 Gene Variation in Multiple Sclerosis Patients Failing Interferon β Treatment., Front Immunol 2021 ; 12(): 628375.
2020The Spatial Heterogeneity of the Gut Limits Predation and Fosters Coexistence of Bacteria and Bacteriophages., Cell Host Microbe 2020 09; 28(3): 390-401.e5.
2020SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis., BMC Bioinformatics 2020 Aug; 21(1): 345.
2020Emergence and clonal expansion of in vitro artemisinin-resistant Plasmodium falciparum kelch13 R561H mutant parasites in Rwanda., Nat. Med. 2020 Aug; (): .
2019Excess calorie intake early in life increases susceptibility to colitis in adulthood, Nat Metab (2019) doi:10.1038/s42255-019-0129-5.
2017Genetic hitchhiking and resistance evolution to transgenic Bt toxins: insights from the African stalk borer Busseola fusca (Noctuidae), Heredity (Edinb) 2017 04;118(4):330-339.
2016Spatial Distribution of Coffee Wilt Disease Under Roguing and Replanting Conditions: A Case Study from Kaweri Estate in Uganda, Phytopathology 2016 11;106(11):1291-1299.
2016The industrial melanism mutation in British peppered moths is a transposable element, Nature 2016 06;534(7605):102-5.
+View full list of publications