Group
Phylogeny/phylogenetics [107]
Tool
Spirochase
Elodie Chapeaublanc
Project
CREID Pilot Program “Danube Ticks”
Sarah Temmam • Bianca Elena Baisan
PhD Student
Visiting Scientist
John Tay
Evolutionary dynamics of infectious diseases
PhD student at Institut Pasteur investigating rate heterogeneity, heterotachy, and Markov-modulated models in dengue virus and other human pathogens.
Undergraduate Student
Alejandra de Selys Gómez
Modelling of Pathogens: Evolution, Adaptation and Spread
Post-doc
Xin Hou
Evolutionary genomics of RNA viruses
I am passionate about integrating bioinformatics and artificial intelligence to advance virology, focusing on virus discovery, evolution, ecology, virus-host interactions, and tools development. My research highlights include: i) Pioneering the use of deep learning […]
Software
bdct – Birth-Death Contact-Tracing parameter estimator
Anna Zhukova
Software
treesimulator – Transmission tree generator
Anna Zhukova • Alejandra de Selys Gómez
Software
PyBDEI – Birth-Death Exposed-Infectious parameter estimator
Anna Zhukova
Software
PhyloDeep
Jakub Voznica
Software
Bboot: Bayesian phylogenetic bootstrap
Frédéric Lemoine
Software
ConDor: Detection of Convergent Mutations in Large Protein Alignments
Frédéric Lemoine
Post-doc
Camille Pelletier
Sorry, this entry is only available in FR.
Permanent Researcher
Aude Bernheim
Molecular diversity of microbes
Aude Bernheim is a microbiologist interested in how bacteria fight off their viruses. She did her PhD in the Pasteur Institute in Paris studying the evolution of CRISPR-Cas systems and her post-doc in the […]
Group
Pole PAGE – Phylogeny, Algorithms, (meta)Genomics, Evolution
Julien Guglielmini
Research Engineer