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10X Genomics barcode ordering
Rayan Chikhi (PI)
Linked-reads are a valuable technologies laying in between short reads and long reads. LR technologies allow the simulation of long reads using barcoded short reads. But the chemistry of such technologies have a limitation […]
2022The K-mer File Format: a standardized and compact disk representation of sets of k-mers., Bioinformatics 2022 Jul; (): .
2020A Graph-Theoretic Barcode Ordering Model forLinked-Reads, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020).
2020Norine: update of the nonribosomal peptide resource., Nucleic Acids Res. 2020 01; 48(D1): D465-D469.
2019SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data, BMC Bioinformatics 2019 Feb;20(1):88.
2018Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring, Mol Ecol Resour 2018 Jul;.
2018MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes, Bioinformatics 2018 02;34(4):585-591.
2016Norine: A powerful resource for novel nonribosomal peptide discovery, Synth Syst Biotechnol 2016 Jun;1(2):89-94.
2015Smiles2Monomers: a link between chemical and biological structures for polymers, J Cheminform 2015;7:62.
2015Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing, Nucleic Acids Res. 2016 Jan;44(D1):D1113-8.