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About

I obtained a PhD in phylogeny in 2008 at the Muséum National d’Histoire Naturelle in Paris, then worked as a post-doc in Torino (Italy, 2009 – 2011) and Faro (Portugal, 2011 – 2013) where I worked on methodological aspects of phylogeny.

In 2013, I have been hired as research engineer in bioinformatics at the Institut de Génétique Humaine in Montpellier where I wrote tools to analyse high-throughput sequencing data, especially small RNA-seq. This is also the kind of job I do now at Institut Pasteur since 2016.

I enjoy programming in python, I’m interested in evolutionary biology, and I find teaching the UNIX command-line and other practical computer skills a rewarding activity.

See also my page at the bioinformatics and biostatistics hub.

My published work is available here: http://www.normalesup.org/~bli/useful.html

Courses

09:00
28
Mar 2018
Course

Software Carpentry

Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including […]
2018-03-28 09:00:00 2018-03-29 17:00:00 Europe/Paris Software Carpentry Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including […] Pasteur, Paris, France
09:00
16
Jan 2017
Course

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France

Projects

project
Ongoing
6 Members

ERC-2015-StG_RNAEPIGEN – Mechanisms of epigenetic inheritance by short RNAs

Germano Cecere (PI)

Epigenetic mechanisms are considered to be central to the development of multicellular organisms made of different cell types, all having identical genomes. Similarly, they may explain how genetically identical organisms are capable of adapting […]
project
Ongoing
16 Members

Bioconvert

Thomas Cokelaer (PI)

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. Life science uses many different formats. They may be old, or with complex syntax and converting […]

CV

  • 2016 – present:  Ingénieur de recherche, Institut Pasteur (Paris)
  • 2013 – 2016: Ingénieur de recherche, Institut de Génétique Humaine (CNRS, Montpellier)
  • 2011 – 2013: Bolsista de pós-doutorado, Centro de Ciências do Mar (Universidade do Algarve, Portugal)
  • 2009 – 2011: Assegnista di ricerca, Dipartimento di Fisica (Politecnico di Torino, Italie)
  • 2007 – 2008: Middle-school biology teacher (Issy-les-Moulineaux)
  • 2004 – 2007: Allocataire de recherche (Université Paris VI) Moniteur (Université Versailles – St-Quentin)
  • 2000 – 2004: Civil-servant student, ENS (Paris)

Publications

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