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© Research
Member: Research Engineer - Alumni

Amine Ghozlane

About

After a PhD in Bioinformatics on the metabolic networks of Trypanosoma brucei and sRNA-mRNA interaction graphs at the LaBRI (Bordeaux), I joined the DSIMB team (INTS) for a post-doc on structural modeling. Then, I performed a second post-doc at Metagenopolis – INRA Jouy-en-Josas, where I was initiated to the analysis of metagenomic data by Dusko Ehrlich (Leader of the Metahit project). This second post-doc was crucial in my career. I was dedicated to project studying microbiome – immunity with Danone Nutricia and microbiome – antibiotic resistance with Davolterra and the European project EvoTAR. I discovered during these projects that metagenomics was a field where I could apply all my previous experience in graph analysis and structural modeling to study the microbiome.
I was recruited at Institut Pasteur Paris in 2015 as research engineer to pursue my work on metagenomics and microbiome. I develop software dedicated to the treatment of metagenomic data by combining either the treatment of sequencing data, statistics, protein structural modeling and graph analysis. SHAMAN is great example of the help that we provide to community with software that provide an easy access to the microbiome secrets.

Courses

Morning session – Introduction to NGS data analysis

The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]

2016-05-10 09:00:00 2016-06-28 12:00:00 Europe/Paris Morning session – Introduction to NGS data analysis The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […] 28 Rue du Dr Roux, Paris, France

CV

Professional experience :

September 2015 to present Research engineer in the HUB of bioinformatics and biostatistics, Institut Pasteur
2013-2015 Postdoctoral researcher at Metagenopolis, INRA Jouy-en-Josas.
Supervisors : Nicolas Pons, S. Dusko Ehrlich
Developpement of pipeline dedicated to the assembly, annotation and differential analysis of metagenomic data. Involved in EVOTAR project (http://www.evotar.eu/), DAV132-CL1002 clinical study of DaVolterra company (http://www.davolterra.com/) and Danone research program.
2012-2013 Postdoctoral researcher INSERM UMR 665, INTS Paris, University of Paris Diderot.
Supervisors : Alexandre G. de Brevern, Nathalie Caulet
Subject:Structural modeling of laccase proteins
March – April 2010 Scientific consultant at the Institut Dermatologique d’Aquitaine (IDEA)
Supervisor : Frédéric Nunzi (Directeur du département In Vitro chez IDEA )
Subject : Statistical analysis of phototoxicity of cosmetic compounds.

Formation :

2012 Ph.D of Bioinformatics – Laboratoire Bordelais de Recherche en Informatique (LaBRI)University of Bordeaux 1 and Centre de Bioinformatique de Bordeaux (CBiB) (France). Subject : Methodological development for the analysis of metabolic networks and non coding RNA Supervisors : Maylis Delest, Patricia Thébault, Isabelle Dutour
2009 Master of Bioinformatics – University of Paris Diderot (France).
2007 Licence of Bioinformatics University of Paris Diderot (France).
2006 DUT (two-year university degree in technology) in biology University of Paris XII (France).

 

Publications

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