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About

Graduated in “Structural Genomics and Bioinformatics”, I mainly worked during almost 6 years at the Genoscope (CEA) in the LABGeM team, within the microbial annotation platform MicroScope.

I specifically focused on functional annotation and microbial metabolic pathways prediction and reconstruction, through pipeline implementation, database modeling and web interface development. Broadly, interactions in the MicroScope platform allowed me to tackle the whole annotation process: from genome assembly and gene prediction to network reconstruction. I also performed several comparative genomics analyses.

As a member of the “Hub team”, I now take part to various projects, linked to HTS data, on different subjects (lncRNAs and stem cells, HIV integration and DNA structure, Ribosomal protein genes and genome evolution, Natural Antisense Transcripts in compact genomes…).

 

Courses

5ème école de bioinformatique AVIESAN-IFB

Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […]

2016-11-20 17:00:00 2016-11-25 17:00:00 Europe/Paris 5ème école de bioinformatique AVIESAN-IFB Initiation au traitement des données de génomique obtenues par séquençage à haut débit Objectifs Les domaines des sciences du vivant liés à l’analyse du génome ont vu au cours des dernières années une accumulation […] Station biologique de Roscoff, Place Georges Teissier, Roscoff, France

CV

Professional Experience

Since October 2014 – Institut Pasteur – HUB Team

2011 – 2014 – CEA – GenoScope – LABGeM (Evry)

Databases and interfaces development for metabolic network curation in the european MICROME project.

2009 – 2010 – IRD – Laboratoire d’étude des symbioses tropicales et méditerranéennes (Montpellier)

Comparative genomics of 9 Aeschyomene symiont strains from the Bradyrhizobium genus : Comparison of the genomic sequences, Core and Pan genome identification, Study of the potential genomic island distribution, Metabolic network comparison.

2008 – 2009 – CEA – GenoScope – LABGeM (Evry)

Setup of a pipeline for Metabolic network reconstruction, database design and web interfaces development in the MicroScope bacterial analysis platform. Metabolic comparison within the Carnoules metagenomics analysis.

 

Education

2007 – MSc : Structural Genomics and Bioinformatics – Université L.Pasteur (Strasbourg)

2005 – BSc : Biology – Univeristé H.Poincarré (Nancy)  

Publications

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