After a PhD in bioinformatics and microbial ecology, I joined the team of C. Brochier-Armanet (Laboratoire de Biométrie et Biologie Évolutive) for a 2 years postdoc to study the deep evolution history of Archaea and Bacteria. Then I performed a postdoc at Institut Pasteur in S Gribaldo’s team to develop phylogenomic approaches aiming at tackling ancient evolutionary events within the microbial world. Since January 2018, I integrated the HUB as a permanent bioinformatician and I am involved in phylogenomic, metagenomics and comparative genomics projects.
Click to view graph
Connections
Click to view timeline
Timeline
Courses
Introduction to Molecular Phylogenetics – ENS Paris
Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
2020-12-14 09:00:00
2020-12-18 18:00:00
Europe/Paris
Introduction to Molecular Phylogenetics – ENS Paris
Introduction to Molecular Phylogenetics course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
Ens Ulm, Rue d'Ulm, Paris, France
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
2019-10-07 09:30:00
2019-11-11 17:30:00
Europe/Paris
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
28 Rue du Dr Roux, Paris, France
Projects
CV
Experiences
-
2018Bioinformatician
Institut Pasteur (EBMC Unit – Bioinformatics and Biostatistics HUB)2017Postdoctoral fellow (9 months)
Institut Pasteur (BMGE Unit)2015Postdoctoral fellow (2 years)
Laboratoire de Biométrie et Biologie Évolutive, Université Lyon 12013Postdoctoral fellow (1,5 years)
Laboratoire Microorganismes : Génome et Environnement, Université Clermont
Education
-
2013Phd in Bioinformatics at Université Blaise Pascal, Clermont-Ferrand
Exploring the microbial diversity from high throughput sequencing2009Master 2 research at Université Blaise Pascal, Clermont-Ferrand
Analysis and modelling of biological data2007Diploma in Agronomic engineering from Institut Agronomique et Vétérinaire Hassan II
Rabat – Morocco
Publications
Download-
2020A dynamic, ring-forming MucB / RseB-like protein influences spore shape in Bacillus subtilis., PLoS Genet 2020 12; 16(12): e1009246.
-
2020Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition., Nat Ecol Evol 2020 Oct 19. Online ahead of print.
-
2020Autotransporters drive biofilm formation and auto-aggregation in the diderm Firmicute Veillonella parvula, J Bacteriol . 2020 Aug 17;JB.00461-20. doi: 10.1128/JB.00461-20. Online ahead of print. .
-
2020One or two membranes? Diderm Firmicutes challenge the Gram-positive/Gram-negative divide., Mol. Microbiol. 2020 03; 113(3): 659-671.
-
2020Transient Dynamics of Archaea and Bacteria in Sediments and Brine Across a Salinity Gradient in a Solar Saltern of Goa, India., Front Microbiol 2020 ; 11(): 1891.
-
2019The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity, Environ. Microbiol. 2019 Aug;21(8):2809-2835.
-
2019Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation, Res. Microbiol. 2019 Jun - Aug;170(4-5):202-213.
-
2019New insights into the pelagic microorganisms involved in the methane cycle in the meromictic Lake Pavin through metagenomics, FEMS Microbiol. Ecol. 2019 Mar;95(3).
-
2019Draft genome sequences for three unisolated Alnus-infective Frankia Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced Frankia strains able to sporulate in-planta., J Genomics 2019 ; 7(): 50-55.
-
2018Extreme halophilic archaea derive from two distinct methanogen Class II lineages, Mol. Phylogenet. Evol. 2018 Apr;127:46-54.
-
+View full list of publications