After a PhD in bioinformatics and microbial ecology, I joined the team of C. Brochier-Armanet (Laboratoire de Biométrie et Biologie Évolutive) for a 2 years postdoc to study the deep evolution history of Archaea and Bacteria. Then I performed a postdoc at Institut Pasteur in S Gribaldo’s team to develop phylogenomic approaches aiming at tackling ancient evolutionary events within the microbial world. Since January 2018, I integrated the HUB as a permanent bioinformatician and I am involved in phylogenomic, metagenomics and comparative genomics projects.
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Courses
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
2019-10-07 09:30:00
2019-11-11 17:30:00
Europe/Paris
Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation
Ce cours a pour objectif de donner les bases théoriques et pratiques, ainsi que les bonnes pratiques nécessaires au démarrage de travaux en phylogénie et épidémiologie moléculaires. Les sessions théoriques donneront les bases du […]
28 Rue du Dr Roux, Paris, France
Projects
CV
Experiences
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Publications
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2019The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity, Environ. Microbiol. 2019 Aug;21(8):2809-2835.
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2019Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation, Res. Microbiol. 2019 Jun - Aug;170(4-5):202-213.
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2019New insights into the pelagic microorganisms involved in the methane cycle in the meromictic Lake Pavin through metagenomics, FEMS Microbiol. Ecol. 2019 Mar;95(3).
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2018Extreme halophilic archaea derive from two distinct methanogen Class II lineages, Mol. Phylogenet. Evol. 2018 Apr;127:46-54.
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2017The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen, Genome Biol Evol 2017 09;9(9):2292-2307.
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2017Active microorganisms thrive among extremely diverse communities in cloud water, PLoS ONE 2017;12(8):e0182869.
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2017Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France, Sci Rep 2017 Jun;7(1):4344.
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2017Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data, FEMS Microbiol. Ecol. 2017 04;93(4).
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2016Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments, Front Microbiol 2016;7:1303.
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2015Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea, Microb. Ecol. 2015 Aug;70(2):473-83.
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