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  • member
  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Clinical Research Nurse
  • Clinician Researcher
  • Department Manager
  • Dual-education Student
  • Full Professor
  • Honorary Professor
  • Lab assistant
  • Master Student
  • Non-permanent Researcher
  • Nursing Staff
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Prize
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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About

I’m a bioinformatician and computational biologist by training, with experiences in mathematical and computational modeling of genome evolution (PhD, Insa-Lyon), constraint-based modeling of bacterial metabolism (Post-Doc, INRAE-Jouy), and analysis of single-cell data (Post-Doc, Cold Spring Harbor Lab).

Thanks to my participation in the NIH’s Brain Initiative Cell Census Network (BICCN) consortium, I became particularly interested in the understanding of cell type identity through the lens of single-cell technologies. I worked on developing comparative tools (MetaNeighbor, MetaMarkers) that enable researchers to integrate and contrast datasets from a variety of single-cell modalities, including transcriptomics (RNA), chromatin accessibility (ATAC), methylation (mC), and spatially resolved transcriptomics (BARseq technology).

I joined the Hub in 2022 and am happy to collaborate on any single-cell related project!

Courses

Bioinformatics program for PhD students 2023 2024

This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]

2023-10-23 09:30:00 2024-06-28 17:00:00 Europe/Paris Bioinformatics program for PhD students 2023 2024 This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […] 25-28 Rue du Docteur Roux, Paris, France

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