Stevenn Volant • Research - Institut Pasteur

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Associate Professor
Clinical Research Assistant
Full Professor
Graduate Student
Lab assistant
Non-permanent Researcher
Permanent Researcher
Pharmacist
PhD Student
Physician
Post-doc
Project Manager
Research Associate
Research Engineer
Retired scientist
Technician
Undergraduate Student
Veterinary
Visiting Scientist

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Deputy Director of Center
Deputy Director of Department
Deputy Director of National Reference Center
Deputy Head of Facility
Director of Center
Director of Department
Director of Institute
Director of National Reference Center
Group Leader
Head of Facility
Head of Operations
Head of Structure
Honorary President of the Departement
Labex Coordinator

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Alexis Criscuolo

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20 Publications

About

After a diploma of statistician engineer from the Ensai (Ecole Nationale de la Statistique et de l’Analyse de l’Information) and a Ph.D in applied mathematics in the Statistics & Genome lab (AgroParisTech), I worked as a developer for the XLSTAT software. I have implemented some statistical methods such as mixture models, log-linear regression, mood test, bayesian hierarchical modeling CBC/HB, … Then I worked as a head teacher in statistics for one year. I was recruited in the Bioinformatic and biostatistic hub of the C3BI (Center of Bioinformatics, Biostatistics and Integrative Biology) in 2014, I am in charge of the statistical analysis and the development of R/R shiny pipelines.

Courses

Bioinformatics program for PhD students 2020-2021

This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]

Image Analysis Hub

Bioinformatics and Biostatistics HUB

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Computational Biology

Center for Technological Resources and Research

Vincent Guillemot

Christophe Malabat

Jean-Yves Tinevez

Marie-Agnès Dillies

Frédéric Lemoine

Nicolas Maillet

Pascal Campagne

Violaine Saint-André

Julien Guglielmini

Quentin Giai Gianetto

Rachel Legendre

Natalia Pietrosemoli

Emeline Perthame

Stéphane Rigaud

Benoît Lelandais

Sébastien MELLA

Anđela Davidović

Véronique Hourdel

Alexis Criscuolo

2020-10-15 09:30:00 2021-06-03 17:00:00 Europe/Paris Bioinformatics program for PhD students 2020-2021 This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […] 25-28 Rue du Dr Roux, 75015 Paris, France

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]

Bioinformatics and Biostatistics HUB

Stéphane Descorps-Declère

Marie-Agnès Dillies

Quentin Giai Gianetto

Vincent Guillemot

Nicolas Maillet

Amandine Perrin

Bertrand Néron

2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France

Morning session – Data analysis using R

This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […]

Bioinformatics and Biostatistics HUB

Marie-Agnès Dillies

Félix Cheysson

2016-03-08 09:00:00 2016-04-12 12:00:00 Europe/Paris Morning session – Data analysis using R This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […] 28 Rue du Docteur Roux, Paris, France

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]

Bioinformatics and Biostatistics HUB

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Marie-Agnès Dillies

Stéphane Descorps-Declère

Vincent Guillemot

Emeline Perthame

Félix Cheysson

Quentin Giai Gianetto

2017-10-16 09:00:00 2017-11-17 12:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]

Bioinformatics and Biostatistics HUB

Marie-Agnès Dillies

Vincent Guillemot

Emeline Perthame

Quentin Giai Gianetto

Christophe Becavin

Violaine Saint-André

2018-10-22 09:00:00 2018-11-20 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Dr Roux, Paris, France

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]

Bioinformatics and Biostatistics HUB

INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations

Marie-Agnès Dillies

Stéphane Descorps-Declère

Vincent Guillemot

Emeline Perthame

Quentin Giai Gianetto

Félix Cheysson

Christophe Becavin

2018-01-08 09:00:00 2018-02-02 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

Projects

Oncobiomics – THE (heterogenity tumor ecosystem)

Marc Monot (PI)

The Oncobiomics project is conducted in the HTE (heterogenity tumor ecosystem) national program launched by the cancer nation institute (Inca) in the third national cancer plan 2014-2019. It’s a consortium project involving 8 teams […]

Host microbiota modification by epidemic Listeria monocytogenes

Javier Pizarro-Cerda (PI)

Listeriolysin S is a bacteriocin specifically produced in the intestine of orally infected mice and necessary for Listeria monocytogenes survival in this organ. In order to investigate whether this toxin might influence the composition […]

Development of a new statistical tool for the analysis of large HDX-MS data sets

Sébastien Brier (PI)

Hydrogen Deuterium eXchange followed by Mass Spectrometry (HDX-MS) is a recognized biophysical tool in structural biology capable of probing protein/ligand interactions, conformational changes, and protein folding and dynamics. The use of improved HDX-MS workflows […]

16S rDNA data analysis

Laurent Debarbieux (PI)

To perform assignment of 16S sequences to bacterial genera and statistical analysis of variations of bacterial populations collected from mice feces

Software

MEMHDX – Mixed Effects Models for HDX experiments

Sébastien Brier (PI)

This tool allows users to perform an automated workflow to analyze, validate and visualize large HDX-MS datasets. The input file is the output of DynamX software from Waters. Output files provide a plot of […]

SHAMAN: SHiny Application for Metagenomic ANalysis

Amine Ghozlane (PI)

SHAMAN is a SHiny Application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization. SHAMAN is based on DESeq2 R package [Anders and Huber 2010] for the analysis of metagenomic data, […]

CV

Professional Experience

Since October 2014 – Institut Pasteur – HUB Team

2013 – 2014 – Head teacher in statistics – MEDISUP sciences

Main activities: Teach statistics to first year medicine students

2012 – 2013 – Developer of algorithms and statistical methods – Addinsoft, XLSTAT software

Main activities: Implement new statistical modules for XLSTAT software. Write support and tutorials for each new methods (french/english).

2008 – 2012 – Ph.D student in applied mathematics, statistics – AgroParisTech

Subject: Semi-parametric modelisation with Markovian dependency. Main activities: Develop new statistical models to deal with spatial dependency in tiling-array data (microarrays with overlapping probes). Supervisors: Stéphane Robin and Marie-Laure Martin Magniette

Education

2012 – Ph.D in applied mathematics, statistics – AgroParisTech

2008 – Master 2 degree in mathematics, statistics option – Université de Rennes 1

2008 – Biostatistics engineer – ENSAI (Ecole Nationale de la Statistique et de l’Analyse de l’Information) – Bruz

Publications

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Published on: 12 May 2015 • Modified on: 16 Mar 2018