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About

After a diploma of statistician engineer from the Ensai (Ecole Nationale de la Statistique et de l’Analyse de l’Information) and a Ph.D in applied mathematics in the Statistics & Genome lab (AgroParisTech), I worked as a developer for the XLSTAT software. I have implemented some statistical methods such as mixture models, log-linear regression, mood test, bayesian hierarchical modeling CBC/HB, … Then I worked as a head teacher in statistics for one year. I was recruited in the Bioinformatic and biostatistic hub of the C3BI (Center of Bioinformatics, Biostatistics and Integrative Biology) in 2014, I am in charge of the statistical analysis and the development of R/R shiny pipelines.

Courses

09:30
15
Oct 2020
Course

Bioinformatics program for PhD students 2020-2021

This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
Image Analysis Hub
Bioinformatics and Biostatistics HUB
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Computational Biology
Center for Technological Resources and Research
Vincent Guillemot
Christophe Malabat
Jean-Yves Tinevez
Marie-Agnès Dillies
Frédéric Lemoine
Nicolas Maillet
Blaise Li
Stevenn Volant
Pascal Campagne
Hugo Varet
Hanna Julienne
Violaine Saint-André
Julien Guglielmini
Thomas Bigot
Quentin Giai Gianetto
Claudia Chica
Rachel Legendre
Adrien Pain
Natalia Pietrosemoli
Emeline Perthame
Stéphane Rigaud
Benoît Lelandais
Dmitry Ershov
Sébastien MELLA
Anđela Davidović
Thomas Obadia
Véronique Hourdel
Amine Ghozlane
Alexis Criscuolo
Amaury Vaysse
2020-10-15 09:30:00 2021-06-03 17:00:00 Europe/Paris Bioinformatics program for PhD students 2020-2021 This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […] 25-28 Rue du Dr Roux, 75015 Paris, France
09:00
16
Jan 2017
Course

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
Bioinformatics and Biostatistics HUB
Stéphane Descorps-Declère
Marie-Agnès Dillies
Gaël Millot
Anne Biton
Stevenn Volant
Quentin Giai Gianetto
Vincent Guillemot
Nicolas Maillet
Blaise Li
Anna Zhukova
Hugo Varet
Amandine Perrin
Eric Deveaud
Bertrand Néron
2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France
09:00
08
Mar 2016
Course

Morning session – Data analysis using R

This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […]
Bioinformatics and Biostatistics HUB
Marie-Agnès Dillies
Stevenn Volant
Hugo Varet
Anne Biton
Félix Cheysson
2016-03-08 09:00:00 2016-04-12 12:00:00 Europe/Paris Morning session – Data analysis using R This course is an introduction to data analysis. It is better to have a minimal knowledge of R. If not, an introductory tutorial is available on the course’s web page and the basics of […] 28 Rue du Docteur Roux, Paris, France
09:00
16
Oct 2017
Course

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Bioinformatics and Biostatistics HUB
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Marie-Agnès Dillies
Stéphane Descorps-Declère
Vincent Guillemot
Emeline Perthame
Stevenn Volant
Hugo Varet
Thomas Obadia
Anne Biton
Félix Cheysson
Gaël Millot
Quentin Giai Gianetto
2017-10-16 09:00:00 2017-11-17 12:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France
09:00
22
Oct 2018
Course

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Bioinformatics and Biostatistics HUB
Marie-Agnès Dillies
Vincent Guillemot
Emeline Perthame
Hugo Varet
Stevenn Volant
Thomas Obadia
Quentin Giai Gianetto
Anne Biton
Claudia Chica
Christophe Becavin
Gaël Millot
Violaine Saint-André
2018-10-22 09:00:00 2018-11-20 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Dr Roux, Paris, France
09:00
08
Jan 2018
Course

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]
Bioinformatics and Biostatistics HUB
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Marie-Agnès Dillies
Stéphane Descorps-Declère
Vincent Guillemot
Emeline Perthame
Hugo Varet
Stevenn Volant
Thomas Obadia
Gaël Millot
Quentin Giai Gianetto
Anne Biton
Félix Cheysson
Christophe Becavin
2018-01-08 09:00:00 2018-02-02 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

Projects

Project
Completed
16 Members

Oncobiomics – THE (heterogenity tumor ecosystem)

Marc Monot (PI)

The Oncobiomics project is conducted in the HTE (heterogenity tumor ecosystem) national program launched by the cancer nation institute (Inca) in the third national cancer plan 2014-2019. It’s a consortium project involving 8 teams […]
Project
Ongoing
5 Members

Host microbiota modification by epidemic Listeria monocytogenes

Javier Pizarro-Cerda (PI)

Listeriolysin S is a bacteriocin specifically produced in the intestine of orally infected mice and necessary for Listeria monocytogenes survival in this organ. In order to investigate whether this toxin might influence the composition […]
Project
Ongoing
6 Members

Development of a new statistical tool for the analysis of large HDX-MS data sets

Sébastien Brier (PI)

Hydrogen Deuterium eXchange followed by Mass Spectrometry (HDX-MS) is a recognized biophysical tool in structural biology capable of probing protein/ligand interactions, conformational changes, and protein folding and dynamics. The use of improved HDX-MS workflows […]
Project
Completed
6 Members

16S rDNA data analysis

Laurent Debarbieux (PI)

To perform assignment of 16S sequences to bacterial genera and statistical analysis of variations of bacterial populations collected from mice feces

Software

Software
Completed
5 Members

MEMHDX – Mixed Effects Models for HDX experiments

Sébastien Brier (PI)

This tool allows users to perform an automated workflow to analyze, validate and visualize large HDX-MS datasets. The input file is the output of DynamX software from Waters. Output files provide a plot of […]
Software
Ongoing
8 Members

SHAMAN: SHiny Application for Metagenomic ANalysis

Amine Ghozlane (PI)

SHAMAN is a SHiny Application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization. SHAMAN is based on DESeq2 R package [Anders and Huber 2010] for the analysis of metagenomic data, […]

CV

Professional Experience

Since October 2014 – Institut Pasteur – HUB Team

2013 – 2014 – Head teacher in statistics – MEDISUP sciences

Main activities: Teach statistics to first year medicine students

2012 – 2013 – Developer of algorithms and statistical methods – Addinsoft, XLSTAT software

Main activities: Implement new statistical modules for XLSTAT software. Write support and tutorials for each new methods (french/english).

2008 – 2012 – Ph.D student in applied mathematics, statistics – AgroParisTech

Subject: Semi-parametric modelisation with Markovian dependency. Main activities: Develop new statistical models to deal with spatial dependency in tiling-array data (microarrays with overlapping probes). Supervisors: Stéphane Robin and Marie-Laure Martin Magniette

 

Education

2012 – Ph.D in applied mathematics, statistics – AgroParisTech

2008 – Master 2 degree in mathematics, statistics option – Université de Rennes 1

2008 – Biostatistics engineer – ENSAI (Ecole Nationale de la Statistique et de l’Analyse de l’Information) – Bruz

Publications

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