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  • team
  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
  • Administrative Staff
  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Full Professor
  • Graduate Student
  • Lab assistant
  • Non-permanent Researcher
  • Permanent Researcher
  • Pharmacist
  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
01
Jan 2017
Ending Date
01
Jan 2018
Status
Completed
Members
1
Structures
5
Publications
2

About

sequana_coverage is a standalone application that reports genomic regions of interest (ROIs) which are significantly over- or under-represented in high throughput sequencing data. Thanks to HTML reports, is allows users to browse the detected ROI. This tool can be used to detect CNVs or deleted regions from a few bases to several kB. It was published in 2018 in GigaScience (, giy110, https://doi.org/10.1093/gigascience/giy110). Please see the online article for details.

Here below is a snapshot of a CNV detectd within a bacterial genome. The algorithm implemented within sequana_coverage can be very precise and determined the starting and ending position with high confidence.

This work was done within the Biomics Platform and is part of the Sequana software

CNV detection

References