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  • department
  • center
  • program_project
  • nrc
  • whocc
  • project
  • software
  • tool
  • patent
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  • Assistant Professor
  • Associate Professor
  • Clinical Research Assistant
  • Full Professor
  • Graduate Student
  • Lab assistant
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  • Permanent Researcher
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  • PhD Student
  • Physician
  • Post-doc
  • Project Manager
  • Research Associate
  • Research Engineer
  • Retired scientist
  • Technician
  • Undergraduate Student
  • Veterinary
  • Visiting Scientist
  • Deputy Director of Center
  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Deputy Head of Facility
  • Director of Center
  • Director of Department
  • Director of Institute
  • Director of National Reference Center
  • Group Leader
  • Head of Facility
  • Head of Operations
  • Head of Structure
  • Honorary President of the Departement
  • Labex Coordinator
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About

I started my career 15 years ago as an engineer. I had for first tasks software and hardware administration of the laboratory as well as the development of a of multi-genomics relational database. During these first two years, I have acquired solid technical bases and a high degree of autonomy.

Later, I had the chance to work as an engineer in an INRIA project. In contact with the researchers, I have received training in software development. In particular, I participated in the development of the exploratory genomics platform “GenoStar”.

At the end of this project, I had the opportunity to complete my formation with PhD. The thesis I wrote led me to analyze, model and criticize the functioning of most used  genomics annotation workbench and to develop an original approach that has resulted in a functional and published prototype.

Following my doctorate, I joined as postdoc fellow a team involved in the development of a genomic data warehouse, thus extending my fields of expertise to data integration of ill-defined and heterogeneous genomic knowledge.

The evolution of the profession in Pasteur has led me to focus my efforts more particularly on the analysis of genomic data. Since then, I have been working more and more closely in Biology at the frontiers of computer methodology and bioanalysis.

For the past ten years or so, I have also been very involved in university teaching and training organization within the Pasteur’s Central Teaching Committee.

Courses

From genes to function: a survival guide to web-based tools for microbiologists

Target Audience: PhD students, Post-doctoral fellows, Research Staff and PIs that work in any field related to microbiology that requires to understand or predict gene function. Summary: Methods to allow experimental scientists lacking computer […]

2019-06-17 08:30:00 2019-06-21 17:30:00 Europe/Paris From genes to function: a survival guide to web-based tools for microbiologists Target Audience: PhD students, Post-doctoral fellows, Research Staff and PIs that work in any field related to microbiology that requires to understand or predict gene function. Summary: Methods to allow experimental scientists lacking computer […] Institut Pasteur, Rue du Docteur Roux, Paris, France

Introduction to data analysis

This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]

2017-01-16 09:00:00 2017-02-17 13:00:00 Europe/Paris Introduction to data analysis This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […] 28 Rue du Docteur Roux, Paris, France

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]

2017-10-16 09:00:00 2017-11-17 12:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

Introduction to Data Analysis

This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […]

2018-01-08 09:00:00 2018-02-02 00:00:00 Europe/Paris Introduction to Data Analysis This four-week graduate level course will give participants basic skills and hands-on training in statistics and descriptive data analysis. This course is (primarily) dedicated to first year PhD students of the Institut Pasteur (each […] 28 Rue du Docteur Roux, Paris, France

CV

Professional Experience

TodayInstitut Pasteur – HUB Team 2009 – 2015Institut Pasteur – Bioinformatician 2006 – 2009 – CNRS, Orsay – Institut Génétique et Microbiologie – PostDoc 2002 – 2006INRIA, Grenoble – Ph.D 2000 – 2002INRIA, Action Helix, Grenoble – Expert engineer 1999 – 2000Infobiogen – Université EVE, Evry – Engineer

Education

2002 – 2006 Thesis Paris VI, INRIA, Grenoble. 1999 – 2000 DESS Informatique Appliquée à la Biologie, UPMC 1997 – 1998 Maîtrise Biologie cellulaire et Physiologie animale, UPMC

Publications

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