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  • team
  • department
  • center
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  • whocc
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  • tool
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  • Associate Professor
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  • Clinical Research Nurse
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  • Master Student
  • MD-PhD Student
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  • Pharmacist
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  • Undergraduate Student
  • Veterinary
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  • Deputy Head of Facility
  • Director of Center
  • Director of Department
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© Research
Service

Open Desk of the Hub of Bioinformatics and Biostatistics

Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
29
Jun 2015
Status
Ongoing
Members
2
Structures
1
Internal price: free
Internal assisted price: free

About

Every Tuesday mornings from 10am to 12am, Hub engineers are enlisted to provide a direct support to any members of Institut Pasteur seeking help on bioinformatics or biostatistics related subjects. You can come directly to Yersin Building (24), Ground Floor.

Please note that open desks are suspended during Christmas & summer breaks, in august.

If you need urgent help from the Hub at that time, please ask a short questions submitted through our web site Hub Portal (https://hub-portal.pasteur.cloud/).

Hub engineers can provide support on :

  • Design of experiment (from the statistical point)
  • Analysis & integration of various types of data, including but not limited to :
    • OMICS data
    • epidemiological data
    • time series data
  • Statistics methods
  • Software development
  • Web tool development
  • Database development
  • Code review
Sessions Group Hub members
08-07-2025 Group 4 Joseph Josephides
Rachel Legendre – Transcriptomics, Epigenomics
Simon Malesys – Web & Software development, Data integration & management
Anna Zhukova – Phylogenetics, Software development, Network analysis
15-07-2025 Group 5 Samar Berreira Ibraim
Johann Dreo – Software Development, Decision support systems, Network analysis
Hanna Julienne – Statistics, Development, Genomics
Emmanuelle Permal – Genomics, Development, Transcriptomics
22-07-2025 Group 6 Agnès Baud – Metagenomic
Quentin Giai Gianetto – Statistics, Proteomics
Blaise Li – Software development, Automation, Reproducibility, Python, command-line
Hélène Lopez-Maestre – Genomics, Transcriptomics, Single Cell
Marie Schmit – Software development, Data integration
29-07-2025 Group 7 Bryan Brancotte – Web Development, Database management
Pascal Campagne – Statistics, Genomics, GWAS
Natalia Pietrosemoli – Systems bioinformatics, Transcriptomics, Proteomics, Metabolomics
Najwa Taib – Phylogenetics

Please use the following table to see available hub members for future sessions

Sessions Group Hub members
02/09/2025
13/01/2026
12/05/2026
Group 1 Claudia Chica – Transcriptomics, Epigenomics, Single cell
Fabien Mareuil – Web development, Galaxy, Structural bioinformatics
Adrien Pain – Genomics, Transcriptomics
Emeline Perthame – Statistics, transcriptomics, Proteomics, Experimental design
09/09/2025
20/01/2026
19/05/2026
Group 2 Stéphane Descorps-Declère – Structural annotation
Eva Eleftheriou – Epigenomics, Genomics, Transcriptomics
Elise Jacquemet – Statistics, Transcriptomics, Experimental design
Bertrand Néron – Algorithmics, Software development, Database management
16/09/2025
27/01/2026
26/05/2026
Group 3 Thomas Cokelaer – Algorithmics, Genomics, Transcriptomics, Assembly, Reproductible pipeline
Bernd Jagla – Single cell, Cytometry data analysis, Transcriptomics
Gaël Millot – Statistics, Genomics, Image analysis
Nicolas Traut – Neuroimaging, Genomics
23/09/2025
03/02/2026
02/06/2026
Group 4 Elodie Chapeaublanc – Web development, Database management
Kevin Da Silva
Anđela Davidović – Mathematical analysis and modelling, scientific computing, numerical simulations, parameter inference, basics in data analysis, statistics and AI
Yann Loe-Mie – Genomics, Transcriptomics, Epigenomics, Single cell
30/09/2025
10/02/2026
09/06/2026
Group 5 Samar Berreira Ibraim
François Laurent – Software development, Modelisation, Statistics
Pierre Lechat – Software development, Variant calling
Olivier Mirabeau – Transcriptomics, Genomics, Statistics, Single cell
07/10/2025
17/02/2026
16/06/2026
Group 6 Almira Chervova – Epigenomics, Transcriptomics, Statistics, Single cell
Johann Dreo – Optimization/Hyper-parameters setting, Algorithmics, Ontology building, Mathematical modeling, Software development, Decision support systems
Sébastien Mella – Single Cell, Statistics
Juliette Meyer – Statistics
14/10/2025
24/02/2026
23/06/2026
Group 7 Julien Fumey – Genomics, Phylogenetics, Web dev, Nextflow
Julia Kende – Phylogenetics, Software development & Algorithmics
Benoît Lelandais – Image analysis, Software development, Artificial Intelligence
Rania Ouazahrou – Transcriptomics, Genomics
21/10/2025
03/03/2026
30/06/2026
Group 8 Freddy Cliquet – Algorithmics, Statistics, System biology
Vincent Laville – Statistics, Development, Genomics
Hélène Lopez-Maestre – Genomics, Transcriptomics, Single Cell
Raphaël Tackx – Web development
28/10/2025
10/03/2026
07/07/2026
Group 9 Amande Dieuaide – Web development
Etienne Kornobis – Software development, Transcriptomics, Genomics
Nathalie Lehmann – Single Cell, Transcriptomics, Pipeline development, Genome annotation
Corinne Maufrais – Genomics, Data management
04/11/2025
17/03/2026
14/07/2026
Group 10 Artem Baidaliuk – Virus discovery in metagenomic/metatranscriptomic data
Stephan Fischer – Single Cell, Genomics
Mickael Orgeur – Genomics, Transcriptomics
Amandine Perrin – Software development, Comparative genomics
11/11/2025
24/03/2026
21/07/2026
Group 11 Jérôme Bourret
Daniele Capocefalo – Transcriptomics, Single cell, Multidimensional analysis, Biological Networks,Network theory, Python
Rémi Planel – Web development, Database management, Galaxy
Hugo Varet – Statistics, R, Metabolomics genomics
18/11/2025
31/03/2026
28/07/2026
Group 12 Thomas Bigot – Sequence alignments, databases, taxonomic classification, divergent sequences detection, phylogeny
Julie Lao – Projet ABRomics
Damien Mornico – Genomics, Paleogenomics, (Transcriptomics)
Stevenn Volant – Statistics, Metagenomics, Rshiny
25/11/2025
07/04/2026
01/09/2026
Group 13 Amine Ghozlane – Metagenomic, Software Development
Julien Gugluielmini – Phylogenetics, Genomics
Vincent Guillemot – Statistics,R
Amaury Vaysse – Genomics, R, GWAS
02/12/2025
14/04/2026
Group 14 Frédéric Lemoine – Phylogenetics, Software development, Transcriptomics
Nicolas Maillet -Algorithmics, Software development, Metagenomics, Stringology
Arnaud Meng – Single Cell, Transcriptomics, Mass spectometry, pipeline Development
Thomas Obadia – Statistics, Epidemiology
09/12/2025
21/04/2026
Group 15 Joseph Josephides – Single Cell, Genomics, Transcriptomics, Machine Learning
Rachel Legendre – Transcriptomics, Epigenomics
Simon Malesys – Web development and databases, Javascript, Vue.js, Node.js
Emmanuelle Permal – Genomics, Development, Transcriptomics
16/12/2025
28/04/2026
Group 16 Agnès Baud – Metagenomic
Quentin Giai Gianetto – Statistics, R, Proteomics, Protein-protein interaction networks, Pathway enrichment analysis
Blaise Li – Software development, Automation, Reproducibility, Python, command-line
Marie Schmit – Software development, Data integration
06/01/2026
05/05/2026
Group 17 Bryan Brancotte – Kubernetes, Web development, Software development
Pascal Campagne – Statistics, Genomics, GWAS
Natalia Pietrosemoli – Systems bioinformatics, Transcriptomics, Proteomics, Metabolomics
Najwa Taib – Phylogenetics

Access Protocol

  • Every Tuesday morning
  • From 10 to 12
  • Yersin Building (24), Ground Floor
  • On Teams using this link
  • Short term assistance, first contact