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About

After a PhD in bioinformatics at Inria/IRISA, Université de Rennes 1, Rennes (France), under the supervision of Dominique Lavenier and Pierre Peterlongo, I did a postdoc in bioinformatics at Laboratory of Ecology and Evolution of Plankton in Stazione Zoologica Anton Dohrn of Naples, Italy.

Both my thesis and my postdoc were about the Tara Oceans projet and the development of new software to analyze huge quantities of raw reads coming from metagenomics sample.

I am currently occupying a research engineer position at the Hub as leader of ALPS group and focus on different computing problems including metagenomics, protein assembly and several short term developments.

Courses

Introduction to Python Programming

Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […]

2018-06-04 09:30:00 2018-06-08 17:00:00 Europe/Paris Introduction to Python Programming Python is often used to learn programming as it is very readable and easy to write. Python is a very popular language in bioinformatics where many programs and libraries are written in python. This […] 25 Rue du Dr Roux, 75015 Paris, France

Morning session – Introduction to NGS data analysis

The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]

2016-05-10 09:00:00 2016-06-28 12:00:00 Europe/Paris Morning session – Introduction to NGS data analysis The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […] 28 Rue du Dr Roux, Paris, France

Software

CV

  • 2013
    PhD in Bioinformatics
    Genscale team, Inria/IRISA, Université de Rennes 1, Rennes, France
    Algorithms for de novo comparisons of huge metagenomic experiments. Application on Tara Oceans project. Advisors: Dominique Lavenier and Pierre Peterlongo. PDF version: http://tel.archives-ouvertes.fr/docs/00/94/19/22/PDF/Maillet_Nicolas.pdf
  • 2010
    Research Master’s Degree of Science
    Université de Rennes 1, Rennes, France
    Majoring in Modelisation of Biological Systems, Specialization in Bioinformatics
  • 2008
    Bachelor’s Degree in Computer Science
    Université de Bretagne Sud, Vannes, France
    Specialization in Mathematics, Informatics & Statistics
  • 2006
    Higher National Diploma of Computer Science
    IUT Informatique, Université de Bretagne Sud, Vannes, France
    Specialization in Computer Engineering
  • 2004
    French Scientific Baccalaureate
    Lycée Joubert, Ancenis, France
    Specialization in Earth and Life Sciences

Experiences

  • 2015
    Research engineer
    Pasteur (HUB, department C3BI)
    Leader of ALPS group. Focusing on different computing problems including metagenomics, protein assembly and several short term developments.
  • 2014
    Postdoctoral position in Bioinformatics
    Stazione Zoologica Anton Dohrn of Naples, Italy (Laboratory of Ecology and Evolution of Plankton)
    Inside the Laboratory of Ecology and Evolution of Plankton, developing new ways for a global comparison of Tara Oceans samples

Publications

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