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  • Deputy Director of Department
  • Deputy Director of National Reference Center
  • Director of Center
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  • Head of Facility
  • Head of Structure
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  • Labex Coordinator
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Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
19
Jan 2012
Ending Date
04
Jul 2018
Status
Ongoing
Members
4
Structures
4

About

Listeriomics integrates all complete genomes, transcriptomes and proteomes published for Listeria species to date. It allows navigating among all these datasets with enriched metadata in a user-friendly format.

listeriomics.pasteur.fr

The main purpose of the website is to give scientists a quick and easy access to tools created for answering the four questions one has when starting a study on a specific genomic element:

  1. What are the known functions of a genomic feature in a given strain and homologies in closely related strains?
  2. What are the biological conditions in which a genomic feature is transcribed?
  3. What are the biological conditions in which a genomic feature is translated?
  4. What is the regulation network involved with a genomic feature of interest?

The website integrates different type of tools for “omics” data analyses:

  • A highly interactive genome viewer for display of gene expression arrays, tiling arrays, and RNA-Seq datasets along with proteomics and genomics datasets.
  • Expression and protein atlas, which are tools to connect every genomic feature (genes, smallRNAs, antisenseRNAs) or proteins to the most relevant “omics” data.
  • A tool to explore gene conservation throughout Listeria strains.
  • A co-expression network tool to discover new potential regulation.

Reference : Bécavin et al., mSystems 2017

Fundings