INCEPTION – INstitut Convergences pour l’étude de l’Émergence des Pathologies au Travers des Individus et des populatiONs

2023

D2I PhD Project

• Juliette Bellangier (PhD Fellow) – Isabelle Rosinski-Chupin (IP) & Olivier Tenaillon (INSERM)
• Camille Schneider (PhD Fellow) – Sylvain Brisse (IP) & Lulla Opatowski (IP)
• Raphaël Malak (PhD Fellow) – Rayan Chikhi (IP) & Hugues Aschard (IP)

2022

D2I PhD Project

• Eli Barthome (PhD Fellow) – Richard Delorme (IP) & Thomas Bourgeron (IP)
• Laura Xénard (PhD Fellow) – Daria Bonazzi (IP) & Guillaume Duménil (IP)
• Mohamed Mounib Benimam (PhD Fellow) – Jean-Christophe Olivo-Marin (IP) & Lucie Peduto (IP)
• Alex Westbrook (PhD Fellow) – Julien Mozziconaci (MNHN/CNRS) & Romain Koszul (IP)

2021

G5 Research Project

• Machine Learning for Integrative Biology – Laura Cantini
• Evolutionary Dynamics of Infectious Diseases – Sebastian Duchene-Garzon

D2I PhD Project

• Simon Galmiche (PhD Fellow) – Arnaud Fontanet (IP) & Simon Cauchemez (IP)
• Mathilde Grimée (PhD Fellow) – Simon Cauchemez (IP) & Michael White (IP)

P2I Collaborative Research Project

• Merging quantitative imaging and statistical modeling to quantify the impact of dengue virus infection on mosquito blood-feeding behavior (BitesGoingViral). Felix Hol (IP), Louis Lambrechts (IP), Jean-Baptiste Masson (IP) and Christian Vestergaard (IP)
• Modelling the role of microbiota in the acquisition and transmission of antibiotic resistant pathogenic bacteria (MICROMOD). Béatrice Laroche (INRAE), Lulla Opatowski (IP) and Didier Guillemot (IP)

2020

G5 Research Project

• Infectious Disease Epidemiology – Michael White
• Comparative Functional Genomics – Camille Berthelot

D2I PhD Project

• Andrew Holtz (PhD Fellow) – Hervé Bourhy (IP) & Anna Zhukova (IP)
• Maria Lopopolo (PhD Fellow) – Nicolas Rascovan (IP) & Lluis Quintana-Murci (IP)
• Cantin Ortiz (PhD Fellow) Christoph Schmidt-Hieber (IP) & Uwe Maskos (IP)
• Viktoriia Gruss (PhD Fellow) Grégory Batt (IP) & Imane El-Meouche (IAME, INSERM/APHP)

P2I Collaborative Research Project

• Integrative genetics and brain research on autism/ neurodevelopmental disorders in france. Thomas Bourgeron (IP), Richard Delorme (AP-HP) and Jean-François Deleuze (CEA).
• Pluridisciplinary characterization of double-strand break repair at single-cell level. Guy-Franck Richard (IP) & Charles Baroud (IP).
• Artificial intelligence for antibiotic drugs (AI4AB). Ivo Gomperts Boneca (IP) Nathalie Aulner (IP), Spencer Shorte (IP), Soojin Jang (IP Korea) and Christophe Zimmer (IP)

2019

G5 Research Project

• Microbial Paleogenomics – Nicolas Rascovan

D2I PhD Project

• Vincent Mallet (PhD Fellow) – Michael Nilges (IP) & Jean-Philippe Vert (MINES ParisTech)
• Armin Shoushtarizadeh (PhD Fellow) – Thomas Gregor (IP) & Pablo Navarro-Gil (IP)
• Chiara Figazzolo (PhD Fellow) – Marcel Hollenstein (IP) & Paola Arimondo (IP)
• Mariana Gonzalez (PhD Fellow) – Arnaud Blondel (IP) & Pierre-Jean Corringer (IP)

P2I Collaborative Research Project

• Identifying Tunneling Nanotube-like Structures in the Developing Cerebellum. Chiara Zurzolo (IP)  &  Jean-Baptiste Masson (IP).
• Path2Resistance: Deciphering evolutionary trajectories to characterize emergence and dissemination of multidrug resistant Escherichia coli. Eduardo Rocha (IP), Philippe Glaser (IP), Amaury Lambert (CIRB, Collège de France), and Guillaume Achaz (CIRB, Collège de France).
• Computational analysis of 3D cell architecture : application in quantifying myocardium orientation at the cellular and tissue levels. Sigolène Meilhac (IP/Institut Imagine) & Jean-Christophe Olivo-Marin (IP)
• Aptamer-labeling as a strategy to determine the structure of macromolecular assemblies. Marcel Hollenstein (IP), Ricardo Pellarin (IP), Eric Durand (Inserm)

2018

P2I Collaborative Research Project

• Machine learning to get at the heart of diagnostic cardiology Sigolène Meilhac, G5 (IP/Imagine), Timothy Wai, G5 (IP), Christophe Zimmer Unit (IP), Francesca Raimondi (APHP/INSERM).
• HOST AND BACTERIAL FACTORS INVOLVED IN INVASIVE LISTERIOSIS Marc Lecuit Unit (IP/INSERM), Lluis Quintana Unit (IP/CNRS), Hugues Aschard, G5 (IP).

G5 Research Project

• Sequence Bioinformatics – Rayan Chikhi

D2I PhD Project

• Marie Morel (PhD Fellow) – Olivier Gascuel Unit, Etienne Simon Loriere G5 (IP).
• Robin Chalumeau (PhD Fellow) – Jean-Christophe Olivo-Marin Unit, Jost Eninnga Unit (IP).

2017

G5 Research Project

• Evolutionary genomics of RNA viruses – Etienne Simon-Loriere

D2I PhD Project

• Jérémy CHOIN (PhD Fellow) – Lluis Quintana Unit, Antoine Gessain Unit (IP).
• Jonathan Bastard (PhD fellow) – Lulla Opatowski (Didier Guillemot Unit, IP), Laura Temime (Cnam).

P2I Collaborative Research Project

• Understanding whooping cough resurgence in Europe by combining genomic, epidemiological and sociological approaches Sylvain Brisse, Simon Cauchemez.
• Microbial and viral circulations among people and wild and domesticated animals in an ecotone, Democratic Republic of Congo (MICROTONE) IP: Tamara Giles-Vernick, Sean Kennedy, Etienne Simon-Lorière, Victor Narat, Romain Duda (postdoc fellow) Université Paris-Diderot : Guillaume Lachenal.