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2022SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads., Nat Methods 2022 Dec; (): .
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2022Mapping-friendly sequence reductions: Going beyond homopolymer compression., iScience 2022 Nov; 25(11): 105305.
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2022The K-mer File Format: a standardized and compact disk representation of sets of k-mers., Bioinformatics 2022 Jul; (): .
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2021Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer., Cell Syst 2021 Sep; (): .
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2021Strainberry: automated strain separation in low-complexity metagenomes using long reads., Nat Commun 2021 07; 12(1): 4485.
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2020A Graph-Theoretic Barcode Ordering Model forLinked-Reads, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020).
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2019Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data, Brief. Bioinformatics 2019 Jun;.
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2019Parallel decompression of gzip-compressed files and random access to DNA sequences, HiCOMB'19, Proceedings of IPDPS 2019.
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2019Graph analysis of fragmented long-read bacterial genome assemblies, Bioinformatics 2019 Mar;.