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Rayan Chikhi
Responsable de Structure
Responsable
Projet Transversal
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2024Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes., Nat Microbiol 2024 Dec; 9(12): 3345-3361.
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2024The Backpack Quotient Filter: a dynamic and space-efficient data structure for querying k -mers with abundance, iScience, 2024, pp.111435. ⟨10.1016/j.isci.2024.111435⟩.
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2024MUSET: Set of utilities for the construction of abundance unitig matrices from sequencing data, 2024.
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2023Comparing methods for constructing and representing human pangenome graphs, Genome Biology, 2023, 24 (1), pp.274. ⟨10.1186/s13059-023-03098-2⟩.
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2023aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets., iScience 2023 Nov; 26(11): 108057.
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2023decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods., Microbiome 2023 Nov; 11(1): 243.
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2023BioConvert: a comprehensive format converter for life sciences, NAR Genomics and Bioinformatics, 2023, 5 (3), ⟨10.1093/nargab/lqad074⟩.
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2023Compression Algorithm for Colored de Bruijn Graphs, Leibniz International Proceedings in Informatics , 273 (17), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, pp.1-14, 2023, 978-3-95977-294-5. ⟨10.4230/LIPIcs.WABI.2023.17⟩.
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2023Efficient mapping of accurate long reads in minimizer space with mapquik., Genome Res 2023 Jun; (): .
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2023Construction and representation of human pangenome graphs, 2023.
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