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CV
Since 2019 – Head of the Genomes & Genetics department at Pasteur Institute.
Since 2013 – Head of the unit Microbial Evolutionary Genomics at Pasteur Institute.
Since 2009 – Senior researcher (DR2 then DR1) at the UMR3525 CNRS in Pasteur Institute.
2016-2017 – Member of the COMESP (president SC5)
2015-17 – Associate director for research of the C3BI (Pasteur Institute).
2012-16– President of the CID51 of the National Research Committee (CoNRS).
2010-2015 – Associate director of the GdR BIM.
2008 to 2012– Head junior team Microbial Evolutionary Genomics in URA2171 and UMR3525.
2005– Habilitation in Biology (U Pierre et Marie Curie, Paris).
2000 to 2009– Junior researcher (CR) at the URA2171 CNRS in the Atelier de BioInformatique at UPMC and at Pasteur Institute.
2000– PhD in BioInformatics (U Versailles Saint–Quentin en Yvelines, France).
1997– MSc in Applied Mathematics (Lisbon Technical U, Portugal).
1995– BSc and MSc in Chemical Engineering/Biotechnology (Lisbon Technical U, Portugal).
Publications
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2020Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation, ISME J (2020). https://doi.org/10.1038/s41396-020-0726-z.
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2020Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids., Nat Commun 2020 07; 11(1): 3602.
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2020A synthesis of bacterial and archaeal phenotypic trait data., Sci Data 2020 06; 7(1): 170.
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2020Phylogenetic background and habitat drive the genetic diversification of Escherichia coli., PLoS Genet. 2020 Jun; 16(6): e1008866.
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2020The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold., J. Biol. Chem. 2020 May; 295(19): 6594-6604.
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2020The Evolution of Protein Secretion Systems by Co-option and Tinkering of Cellular Machineries., Trends Microbiol. 2020 May; 28(5): 372-386.
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2020Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae, BMC Biol. 2020 Apr;18(1):43.
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2020Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells., J. Mol. Biol. 2020 02; 432(3): 745-761.
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2020Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria., Nat Commun 2020 02; 11(1): 758.
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2020Unlinked rRNA genes are widespread among bacteria and archaea., ISME J 2020 02; 14(2): 597-608.
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