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Events

09:00
11
Oct 2018
symposium

Neural networks – From brains to machines and vice versa

Building: François Jacob – Room: Auditorium François Jacob – Address: 28 Rue du Docteur Roux, Paris, France
Dynamic Neuronal Imaging
Neural circuits for spatial navigation and memory
Decision and Bayesian Computation
Imaging and Modeling
Quantitative biology
INCEPTION – Institut Convergence for the study of Emergence of Pathology Through Individuals and Populations
Neuroscience
Cell Biology & Infection
David DiGregorio
Jean-Baptiste Masson
Christoph Schmidt-Hieber
Christophe Zimmer
2018-10-11 09:00:00 2018-10-12 18:00:00 Europe/Paris Neural networks – From brains to machines and vice versa Continuous advances in machine learning have enabled groundbreaking progress in diverse fields such as computer vision or strategy games by making use of artificial neural networks. In parallel, novel technologies for recording and manipulating […] 28 Rue du Docteur Roux, Paris, France

Projects

project
Ongoing
2 Members

Deep learning for biology

Christophe Zimmer (PI)

Deep learning methods use artificial neural networks to learn complex mappings between raw numeric input data and higher order semantic outputs. These computational techniques are at the heart of recent advances in artificial intelligence, with breakthrough […]
project
Ongoing
10 Members

Pointillist nanoscopy

Christophe Zimmer (PI)

Fluorescence microscopy is a defining technology in cellular biology but the diffraction of light limits the resolution of standard microscopes to ~200 nm, thus preventing detailed analyses of molecular structures. We are actively interested […]
project
Ongoing
10 Members

Nuclear architecture and function

Christophe Zimmer (PI)

The one-dimensional sequence of the genome is carried by long polymers (chromosomes), which fold in the three dimensional volume of the nucleus. How this folding occurs and what it implies for genome function remains […]

Software

software
Completed
2 Members

ANNA-PALM

Christophe Zimmer (PI)

This software allows to vastly reduce the acquisition time of super-resolution localization microscopy. See https://annapalm.pasteur.fr/#/. The method is described in detail in Ouyang et al. 2018.
software
Completed
6 Members

GRAAL: genome assembly from chromosome contact frequencies

Christophe Zimmer (PI)

A software to reconstruct 1D genome structures from 3D contact data obtained from Hi-C experiments. This movie shows the iterative assembly by GRAAL of the Trichoderma reesei genome (right) using contact frequencies determined by […]
software
Completed
2 Members

FISH-quant: automatically counting transcripts in RNA-FISH images

Christophe Zimmer (PI)

  A free Matlab-based toolbox to detect and count individual mRNA transcripts in single cells by automatic analysis of 3D RNA-FISH images. Software is available freely together with extensive instructions at : https://code.google.com/p/fish-quant/. The […]
software
Completed
2 Members

QuickPALM: Reconstruction of PALM/STORM super-resolution microscopy images

Christophe Zimmer (PI)

A free and fast ImageJ plugin for reconstructing super-resolution 3D images in PALM/STORM microscopy is available freely for download at : http://code.google.com/p/quickpalm/This website also offers tutorials about using the software and practical information on […]
software
Completed
2 Members

Nucloc: mapping gene territories in the yeast nucleus

Christophe Zimmer (PI)

We have developed a series of software tools to compute and analyze the positions of genomic loci from thousands of yeast cells observed in fluorescence microscopy.  These tools are available freely to academic and […]

Publications

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