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Centre: Archivé: Centre de Bioinformatique, Biostatistique et Biologie Intégrative

Tous Publications

de Tredern E, Manceau D, Blanc A, Parameswaran A, Sakagiannis P, Barre C, Sus V, Viscido F, Akiki P, Hasan MA, Autran S, Laurent F, Nawrot MP, Masson JB, Jovanic T, Feeding state-dependent neuropeptidergic modulation of reciprocally interconnected inhibitory neurons biases sensorimotor decisions in Drosophila., Nat Commun 2025 Sep; 16(1): 8198.

Eloïse de Tredern, Dylan Manceau, Alexandre Blanc, Abhijit Parameswaran, Panagiotis Sakagiannis, Chloe Barre, Victoria Sus, Francesca Viscido, Perla Akiki, Md Amit Hasan, Sandra Autran, François Laurent, Martin Paul Nawrot, Jean-Baptiste Masson, Tihana Jovanic, Feeding state-dependent neuropeptidergic modulation of reciprocally interconnected inhibitory neurons biases sensorimotor decisions in Drosophila, Nature Communications, 2025, 16 (1), pp.8198. ⟨10.1038/s41467-025-61805-y⟩.

Vial T, Lopez-Maestre H, Couderc E, Pinaud S, Howick V, Akorli J, Lawniczak M, Marti G, Merkling SH, Single-cell transcriptional landscapes of Aedes aegypti midgut and fat body after a bloodmeal., Cell Genom 2025 Aug; 5(8): 100924.

Sarah H Merkling, Elodie Couderc, Anna B Crist, Stéphanie Dabo, Josquin Daron, Natapong Jupatanakul, Myriam Burckbuchler, Thomas Vial, Odile Sismeiro, Rachel Legendre, Adrien Pain, Hugo Varet, Davy Jiolle, Diego Ayala, Christophe Paupy, Eric Marois, Louis Lambrechts, Dengue virus susceptibility in Aedes aegypti linked to natural cytochrome P450 promoter variants, Nature Communications, 2025, 16 (1), pp.7468. ⟨10.1038/s41467-025-62693-y⟩.

Elodie Couderc, Anna B Crist, Josquin Daron, Hugo Varet, Femke a H van Hout, Pascal Miesen, Umberto Palatini, Stéphanie Dabo, Thomas Vial, Louis Lambrechts, Sarah H Merkling, Aedes aegypti VLG-1 challenges the assumed antiviral nature of Vago genes, BMC Biology, 2025, 23 (1), pp.223. ⟨10.1186/s12915-025-02325-5⟩.

Gonnella G, Libri V, Gioacchino E, Mella S, Sann S, Sorn S, Ken S, Seffer V, Ya N, Heng L, Yay C, Sakuntabhai A, Ly S, Dussart P, Duong V, Hasan M, Cantaert T, Immune profiling in subclinical secondary dengue-infected cases reveals adaptive immune signatures correlated to protection from severe dengue., Cell Host Microbe 2025 Jul; 33(7): 1191-1207.e4.

Isabelle Bouyssou, Lemu Golassa, Inès Vigan-Womas, Matthieu Schoenhals, Arsène Ratsimbasoa, Ali Ould Mohamed Salem Boukhary, Maria de Fátima Ferreira-Da-Cruz, Sandrine Houzé, Laurence Ma, Feng Lu, Chetan Chitnis, Pascal Campagne, Didier Ménard, Genomic analysis of Plasmodium vivax field isolates circulating in sub-Saharan Africa, Communications Biology, 2025, 8 (1), pp.1012. ⟨10.1038/s42003-025-08276-5⟩.

Cyril Savin, Pierre Lê-Bury, Julien Guglielmini, Thibaut Douché, Guillem Mas Fiol, Rodolphe Buzelé, Cécile Le Brun, Frédéric Bastides, Maud François, Béatrice Birmelé, Laura Guichard, Julien Madej, Rémi Beau, Nicolas Cabanel, Laurent Dortet, Mariette Matondo, Olivier Dussurget, Elisabeth Carniel, Philippe Lanotte, Javier Pizarro-Cerdá, In-host evolution of Yersinia enterocolitica during a chronic human infection, Nature Communications, 2025, 16 (1), pp.5637. ⟨10.1038/s41467-025-60782-6⟩.

Adeline Pastuszka, Maria-Vittoria Mazzuoli, Chiara Crestani, Léonie Deborde, Odile Sismeiro, Coralie Lemaire, Vanessa Rong, Myriam Gominet, Elise Jacquemet, Rachel Legendre, Philippe Lanotte, Arnaud Firon, The virulence regulator CovR boosts CRISPR-Cas9 immunity in Group B Streptococcus, Nature Communications, 2025, 16 (1), pp.5678. ⟨10.1038/s41467-025-60871-6⟩.

Manish K Singh, Laetitia Cavellini, Maria Angeles Morcillo-Parra, Christina Kunz, Mickaël Lelek, Perrine Bomme, Aurélia Barascu, Cynthia Alsayyah, Maria Teresa Teixeira, Naïma Belgareh-Touzé, Adeline Mallet, Lea Dietrich, Christophe Zimmer, Mickael M Cohen, A constricted mitochondrial morphology formed during respiration, Nature Communications, 2025, 16 (1), pp.5314. ⟨10.1038/s41467-025-60658-9⟩.

Gaston Bizel-Bizellot, Simon Galmiche, Benoît Lelandais, Tiffany Charmet, Laurent Coudeville, Arnaud Fontanet, Christophe Zimmer, Extracting circumstances of Covid-19 transmission from free text with large language models, Nature Communications, 2025, 16 (1), pp.5836. ⟨10.1038/s41467-025-60762-w⟩.

Alemany C, Da Graça J, Giai Gianetto Q, Dupont M, Paisant S, Douché T, Isel C, Delevoye C, Danglot L, Matondo M, Morel E, Brault JB, Naffakh N, Influenza A virus induces PI4P production at the endoplasmic reticulum in an ATG16L1-dependent manner to promote the egress of viral ribonucleoproteins., PLoS Biol 2025 Jul; 23(7): e3002958.

Parul Singh, Justine Couble, Jacques Serizay, Maureen D Cabahug, Catarina Rosa, Patty Chen, Artur Scherf, Romain Koszul, Sebastian Baumgarten, Jessica M Bryant, High-resolution map of the Plasmodium falciparum genome reveals MORC/ ApiAP2-mediated links between distant, functionally related genes, Nature Microbiology, 2025, 10 (7), pp.1665-1683. ⟨10.1038/s41564-025-02038-z⟩.

Rasoamalala F, Ramasindrazana B, Parany MJ, Rahajandraibe S, Randriantseheno L, Rahelinirina S, Gorgé O, Valade E, Harimalala M, Rajerison M, Cauchemez S, Brault A, Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar., Proc Natl Acad Sci U S A 2025 Jun; 122(24): e2502161122.

Pereda J, Espinosa R, García-Solís B, Guerra-Galán T, Van-Den-Rym A, Kars ME, Mena R, Galán V, de Andrés-Martín A, Rodríguez-Gallego C, López-Lera A, Corvillo F, Pérez-Martínez A, López-Collazo E, Sánchez-Ramón S, Martínez-Barricarte R, Quintana-Murci L, Lorenzo-Salazar JM, Itan Y, Flores C, Pérez-de-Diego R, IEIVariantFilter: a bioinformatics tool to speed up genetic diagnosis of inborn errors of immunity patients., NAR Genom Bioinform 2025 Jun; 7(2): lqaf069.

Julia Faillace Thiesen, Elise Jacquemet, Pascal Campagne, Denis Chatelain, Etienne Brochot, Yves-Edouard Herpe, Nolwenn M Dheilly, Fabrice Bouilloux, Bénédicte Rognon, Alexandre Douablin, Guillaume Leboucher, Florent Percher, Marc Eloit, Philippe Pérot, Molecular detection of hrHPV-induced high-grade squamous intraepithelial lesions of the cervix through a targeted RNA next generation sequencing assay, Molecular Medicine, 2025, 31 (1), pp.215. ⟨10.1186/s10020-025-01238-x⟩.

Zhukova A, Gascuel O, Accounting for contact tracing in epidemiological birth-death models., PLoS Comput Biol 2025 May; 21(5): e1012461.

Lopopolo M, Avanzi C, Duchene S, Luisi P, de Flamingh A, Ponce-Soto GY, Tressieres G, Neumeyer S, Lemoine F, Nelson EA, Iraeta-Orbegozo M, Cybulski JS, Mitchell J, Marks VT, Adams LB, Lindo J, DeGiorgio M, Ortiz N, Wiens C, Hiebert J, Bonifaz A, Montes de Oca G, Paredes-Solis V, Franco-Paredes C, Vera-Cabrera L, Pereira Brunelli JG, Jackson M, Spencer JS, Salgado CG, Han XY, Pearce CM, Warren AK, Rosa PS, de Finardi AJ, Belone AFF, Ferreira C, Suffys PN, Fontes ANB, Vasconcellos SEG, Schaub R, Couppié P, Drak Alsibai K, Hernández-Castro R, Silva Miranda M, Estrada-Garcia I, Jurado-Santacruz F, Orlando L, Schroeder H, Quintana-Murci L, Del Papa M, Lahiri R, Malhi RS, Rasmussen S, Rascovan N, Pre-European contact leprosy in the Americas and its current persistence., Science 2025 May; (): eadu7144.

Bonnet I, Orgeur M, Brossier F, Sayes F, Frigui W, Madacki J, Varet H, Chauffour A, Aubry A, Veziris N, Sougakoff W, Brosch R, Tournebize R, Evaluation of the role of whiB6 and kdpDE in the dominant multidrug-resistant clone Mycobacterium tuberculosis B0/W148., Microbiol Spectr 2025 May; (): e0322424.

, Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems, Science, 388, 6747, (2025)..

Alexander Bergman, Anna Crist, Hélène Lopez-Maestre, Hervé Blanc, Mauro Castelló-Sanjuán, Lionel Frangeul, Hugo Varet, Josquin Daron, Sarah Hélène Merkling, Maria-Carla P Saleh, Louis A Lambrechts, Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti, BMC Biology, 2025, 23 (1), pp.130. ⟨10.1186/s12915-025-02225-8⟩.

Darracq B, Littner E, Brunie M, Bos J, Kaminski PA, Depardieu F, Slesak W, Debatisse K, Touchon M, Bernheim A, Bikard D, Le Roux F, Mazel D, Rocha EPC, Loot C, Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems., Science, 2025 May; 388(6747): eads0768.

Mareuil F, Torchet R, Ruano LC, Mallet V, Nilges M, Bouvier G, Sperandio O, InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep., Nucleic Acids Res 2025 May; (): .

Salim Chibani, Elhem Yacoub, Safa Boujemaa, Helmi Mardassi, J. Guglielmini, Amaury Vaysse, Nadine Khadraoui, Béhija Mlik, Boutheina Ben Abdelmoumen Mardassi, A genome-wide investigation of Mycoplasma hominis genes associated with gynecological infections or infertility, Frontiers in Microbiology, In press, 16, pp.1561378. ⟨10.3389/fmicb.2025.1561378⟩.

Mazzuoli MV, van Raaphorst R, Martin LS, Bock FP, Thierry A, Marbouty M, Waclawiková B, Stinenbosch J, Koszul R, Veening JW, HU promotes higher order chromosome organization and influences DNA replication rates in Streptococcus pneumoniae., Nucleic Acids Res 2025 Apr; 53(8): .

Blaise Lafoux, Gustave Fourcaud, Jimmy Hortion, Laura Soyer, Alexandra Journeaux, Clara Germain, Stéphanie Reynard, Hadrien Cousseau, Clémentine Larignon, Natalia Pietrosemoli, Séverine Croze, Joël Lachuer, Emeline Perthame, Sylvain Baize, Expansion of myeloid suppressor cells and suppression of Lassa virus-specific T cells during fatal Lassa fever, PLoS Pathogens, 2025, 21 (4), pp.e1013111. ⟨10.1371/journal.ppat.1013111⟩.

Charles Bernard, Yannick Labreuche, Carine Diarra, Pauline Daszkowski, Karine Cahier, David Goudenège, Martin G Lamarche, Gregory B Whitfield, Manon Lang, Jeffrey Valencia, Justine Groseille, Damien Piel, Yan-Jiun Lee, Peter Weigele, Yves V Brun, Eduardo P. C. Rocha, Frédérique Le Roux, Adaptive genomic plasticity in large-genome, broad-host-range vibrio phages, The International Society of Microbiologial Ecology Journal, In press, pp.wraf063. ⟨10.1093/ismejo/wraf063⟩.

Léa Deltourbe, Jamie Sugrue, Elizabeth Maloney, Florian Dubois, Anthony Jaquaniello, Jacob Bergstedt, Etienne Patin, Lluis Quintana-Murci, Molly Ingersoll, Darragh Duffy, Steroid hormone levels vary with sex, aging, lifestyle, and genetics, Science Advances , 2025, 11 (13), pp.eadu6094. ⟨10.1126/sciadv.adu6094⟩.

Dugied G, Laurent EM, Attia M, Gimeno JP, Bachiri K, Samavarchi-Tehrani P, Donati F, Rahou Y, Munier S, Amara F, Dos Santos M, Soler N, Volant S, Pietrosemoli N, Gingras AC, Pavlopoulos GA, van der Werf S, Falter-Braun P, Aloy P, Jacob Y, Komarova A, Sofianatos Y, Coyaud E, Demeret C, Multimodal SARS-CoV-2 interactome sketches the virus-host spatial organization., Commun Biol 2025 Mar; 8(1): 501.

Iacopo Ruolo, Sara Napolitano, Lorena Postiglione, Gennaro Napolitano, Andrea Ballabio, Diego Di Bernardo, Investigation of dynamic regulation of TFEB nuclear shuttling by microfluidics and quantitative modelling, Communications Biology, 2025, 8 (1), pp.443. ⟨10.1038/s42003-025-07870-x⟩.

Coluzzi C, Rocha EPC, The Spread of Antibiotic Resistance Is Driven by Plasmids Among the Fastest Evolving and of Broadest Host Range., Mol Biol Evol 2025 Mar; 42(3): .

Ziyatdinov A, Hobbs BD, Kanaan-Izquierdo S, Moll M, Sakornsakolpat P, Shrine N, Chen J, Song K, Bowler RP, Castaldi PJ, Tobin MD, Kraft P, Silverman EK, Julienne H, Cho MH, Aschard H, Identifying chronic obstructive pulmonary disease subtypes using multi-trait genetics., EBioMedicine 2025 Mar; 113(): 105609.

Bønnelykke TH, Chabry MA, Perthame E, Dombrowsky G, Berger F, Dittrich S, Hitz MP, Desgrange A, Meilhac SM, Notch3 is an asymmetric gene and a modifier of heart looping defects in Nodal mouse mutants., PLoS Biol 2025 Mar; 23(3): e3002598.

Vendrell-Fernández S, Beamud B, Abou Haydar Y, Am de Sousa J, Burlaud-Gaillard J, Kornobis E, Raynal B, Vinh J, Bikard D, Ghigo JM, Incomplete lytic cycle of a widespread Bacteroides bacteriophage leads to the formation of defective viral particles., PLoS Biol 2025 Mar; 23(3): e3002787.

Girard F, Even A, Thierry A, Ruault M, Meneu L, Larrous P, Garnier M, Adiba S, Taddei A, Koszul R, Cournac A, Parasitic plasmids are anchored to inactive regions of eukaryotic chromosomes through a nucleosome signal., EMBO J 2025 Feb; (): .

Camard L, Stephen T, Yahia-Cherbal H, Guillemot V, Mella S, Baillet V, Lopez-Maestre H, Capocefalo D, Cantini L, Leloup C, Marsande J, Garro K, Sienes Bailo J, Dangien A, Pietrosemoli N, Hasan M, Wang H, Eckle SBG, Fourie AM, Greving C, Joyce-Shaikh B, Parker R, Cua DJ, Bianchi E, Rogge L, IL-23 tunes inflammatory functions of human mucosal-associated invariant T cells., iScience 2025 Feb; 28(2): 111898.

Gagliardini M, Mechaussier S, Campos Pina C, Morais M, Postal O, Jean P, Dupont T, Singh-Estivalet A, Udugampolage S, Scandola C, Verpy E, Libé-Philippot B, Inbar TC, Schwenkgrub J, Spinola CMB, Etournay R, El-Amraoui A, Bathellier B, Mallet A, Delmaghani S, Giraudet F, Petit C, Gourévitch B, Avan P, Michalski N, Deciphering Auditory Hyperexcitability in Otogl Mutant Mice Unravels an Auditory Neuropathy Mechanism., Adv Sci (Weinh) 2025 Feb; (): e2410776.

Cortier T, Gilboa M, Layan M, Joseph G, Meltzer L, Amit S, Rubin C, Lustig Y, Alroy-Preis S, Kreiss Y, Cauchemez S, Regev-Yochay G, Factors associated with the transmission of the delta SARS-CoV-2 variant in households: the Israeli COVID-19 Family Study (ICoFS)., J Infect Dis 2025 Feb; (): .

Léa Meneu, Christophe Chapard, Jacques Serizay, Alex Westbrook, Etienne Routhier, Myriam Ruault, Manon Perrot, Alexandros Minakakis, Fabien Girard, Amaury Bignaud, Antoine Even, Géraldine Gourgues, Domenico Libri, Carole Lartigue, Aurèle Piazza, Agnès Thierry, Angela Taddei, Frédéric Beckouët, Julien Mozziconacci, Romain Koszul, Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus, Science, 2025, 387 (6734), pp.eadm9466. ⟨10.1126/science.adm9466⟩.

Liu J, Lelek M, Yang Y, Salles A, Zimmer C, Shen Y, Krupovic M, A relay race of ESCRT-III paralogs drives cell division in a hyperthermophilic archaeon., mBio 2025 Feb; 16(2): e0099124.

Vicedomini R, Andreace F, Dufresne Y, Chikhi R, Duitama González C, MUSET: Set of utilities for constructing abundance unitig matrices from sequencing data., Bioinformatics 2025 Feb; (): .

Dejoux A, Zhu Q, Woolfe A, Godon O, Ellouze S, Mottet G, Castrillon C, Gillis C, Pecalvel C, Ganneau C, Iannascoli B, Lemoine F, Saul F, England P, Reber LL, Gouel-Chéron A, de Chaisemartin L, Haouz A, Millot GA, Bay S, Gérard A, Jönsson F, Chollet-Martin S, Bruhns P, Antibody-secreting cell repertoires hold high-affinity anti-rocuronium specificities that can induce anaphylaxis in vivo., J Allergy Clin Immunol 2025 Jan; (): .

Maxime Lehman, Chloé Barré, Md Amit Hasan, Benjamin Flament, Sandra Autran, Neena Dhiman, Peter Soba, Jean-Baptiste Masson, Tihana Jovanic, Neural circuits underlying context-dependent competition between defensive actions in Drosophila larvae, Nature Communications, 2025, 16 (1), pp.1120. ⟨10.1038/s41467-025-56185-2⟩.

Lehman M, Barré C, Hasan MA, Flament B, Autran S, Dhiman N, Soba P, Masson JB, Jovanic T, Neural circuits underlying context-dependent competition between defensive actions in Drosophila larvae., Nat Commun 2025 Jan; 16(1): 1120.

Michella Khoury Damaa, Jacques Serizay, Rémi Balagué, Amélie-Rose Boudjema, Marion Faucourt, Nathalie Delgehyr, Kim Jee Goh, Hao Lu, Ee Kim Tan, Cameron T James, Catherine Faucon, Rana Mitri, Diana Carolin Bracht, Colin D Bingle, Norris Ray Dunn, Sebastian J Arnold, Laure-Emmanuelle Zaragosi, Pascal Barbry, Romain Koszul, Heymut Omran, Gabriel Gil-Gómez, Estelle Escudier, Marie Legendre, Sudipto Roy, Nathalie Spassky, Alice Meunier, Cyclin O controls entry into the cell-cycle variant required for multiciliated cell differentiation, Cell Reports, 2025, 44 (1), pp.115117. ⟨10.1016/j.celrep.2024.115117⟩.

Geiselmann A, Micouin A, Vandormael-Pournin S, Laville V, Chervova A, Mella S, Navarro P, Cohen-Tannoudji M, PI3K/AKT signaling controls ICM maturation and proper epiblast and primitive endoderm specification in mice., Dev Cell 2025 Jan; 60(2): 204-219.e6.

Puszko AK, Batista FA, Ejjoummany A, Bouillon A, Maurel M, Adler P, Legru A, Martinez M, Ortega Varga L, Hadjadj M, Alzari PM, Blondel A, Haouz A, Barale JC, Hernandez JF, Towards Improved Peptidic α-Ketoamide Inhibitors of the Plasmodial Subtilisin-Like SUB1: Exploration of N-Terminal Extensions and Cyclic Constraints., ChemMedChem 2025 Jan; (): e202400924.

Blanc T, Godard C, Grevent D, El Beheiry M, Salomon LJ, Hajj B, Masson JB, Photorealistic rendering of fetal faces from raw magnetic resonance imaging data., Ultrasound Obstet Gynecol 2025 Jan; (): .

Fruchard L, Babosan A, Carvalho A, Lang M, Li B, Duchateau M, Giai Gianetto Q, Matondo M, Bonhomme F, Hatin I, Arbes H, Fabret C, Corler E, Sanchez G, Marchand V, Motorin Y, Namy O, de Crécy-Lagard V, Mazel D, Baharoglu Z, Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification., Elife 2025 Jan; 13(): .

Grossi V, Cuny P, Militon C, Witwinowski J, Eddhif B, Sylvi L, Nowakowski M, Kosta A, Antheaume I, Cornil J, Dubrac S, Kende J, Gribaldo S, Borrel G, Halophilic archaea produce wax esters and use an alternative fatty acyl-coenzyme A reductase for precursor synthesis., ISME J 2025 Jan; 19(1): .

Angelica Frusteri Chiacchiera, Michela Casanova, Massimo Bellato, Aurora Piazza, Roberta Migliavacca, Grégory Batt, Paolo Magni, Lorenzo Pasotti, Harnessing CRISPR interference to resensitize laboratory strains and clinical isolates to last resort antibiotics, Scientific Reports, 2025, 15, pp.261. .

Moreau CA, Ayrolles A, Ching CRK, Bonicel R, Mathieu A, Stordeur C, El Khantour C, Bergeret P, Traut N, Tran L, Germanaud D, Alison M, Elmaleh-Bergès M, Ehrlich S, Thompson PM, Bourgeron T, Delorme R, Neuroimaging insights into brain mechanisms of early-onset restrictive eating disorders., Nat Ment Health 2025 ; 3(7): 780-788.

Lagare A, Perthame E, Lazoumar RH, Aboutalib FA, Kaka BK, Sidikou BA, Issaka B, Moumouni K, Testa J, Jambou R, Climatic factors driving influenza transmission in Sahelian area: A twelve-year retrospective study in Niger (2010-2021)., PLoS One 2025 ; 20(5): e0322288.

Martínez-Carranza M, Vialle L, Madru C, Cordier F, Tekpinar AD, Haouz A, Legrand P, Le Meur RA, England P, Dulermo R, Guijarro JI, Henneke G, Sauguet L, Communication between DNA polymerases and Replication Protein A within the archaeal replisome., Nat Commun 2024 Dec; 15(1): 10926.

Serizay J, Khoury Damaa M, Boudjema AR, Balagué R, Faucourt M, Delgehyr N, Noûs C, Zaragosi LE, Barbry P, Spassky N, Koszul R, Meunier A, Cyclin switch tailors a cell cycle variant to orchestrate multiciliogenesis., Cell Rep 2024 Dec; (): 115103.

Patin E, Quintana-Murci L, Tracing the Evolution of Human Immunity Through Ancient DNA., Annu Rev Immunol 2024 Dec; (): .

Hawkey J, Frézal L, Tran Dien A, Zhukova A, Brown D, Chattaway MA, Simon S, Izumiya H, Fields PI, De Lappe N, Kaftyreva L, Xu X, Isobe J, Clermont D, Njamkepo E, Akeda Y, Issenhuth-Jeanjean S, Makarova M, Wang Y, Hunt M, Jenkins BM, Ravel M, Guibert V, Serre E, Matveeva Z, Fabre L, Cormican M, Yue M, Zhu B, Morita M, Iqbal Z, Silva Nodari C, Pardos de la Gandara M, Weill FX, Genomic perspective on the bacillus causing paratyphoid B fever., Nat Commun 2024 Dec; 15(1): 10143.

Arribas YA, Baudon B, Rotival M, Suárez G, Bonté PE, Casas V, Roubert A, Klein P, Bonnin E, Mchich B, Legoix P, Baulande S, Sadacca B, Diharce J, Waterfall JJ, Etchebest C, Carrascal M, Goudot C, Quintana-Murci L, Burbage M, Merlotti A, Amigorena S, Transposable element exonization generates a reservoir of evolving and functional protein isoforms., Cell 2024 Dec; (): .

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Deschaght P, Van Simaey L, Decat E, Van Mechelen E, Brisse S, Vaneechoutte M, Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas maltophilia isolates using melting curve analysis of RAPD-generated DNA fragments (McRAPD), Res. Microbiol. 2011 May;162(4):386-92.

Coulibaly-N'Golo GM, Ekaza E, Coulibaly B, Aka N, N'guessan RK, Thiberge JM, Caro V, Brisse S, Bretin-Dosso M, Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire, J Infect Dev Ctries 2011 Feb;5(1):59-63.

Di Popolo A, Giannouli M, Triassi M, Brisse S, Zarrilli R, Molecular epidemiological investigation of multidrug-resistant Acinetobacter baumannii strains in four Mediterranean countries with a multilocus sequence typing scheme, Clin. Microbiol. Infect. 2011 Feb;17(2):197-201.

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Letessier A, Millot GA, Koundrioukoff S, Lachagès AM, Vogt N, Hansen RS, Malfoy B, Brison O, Debatisse M, Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site, Nature 2011 Feb;470(7332):120-3.

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Izeddin I, Specht CG, Lelek M, Darzacq X, Triller A, Zimmer C, Dahan M, Super-resolution dynamic imaging of dendritic spines using a low-affinity photoconvertible actin probe, PLoS ONE 2011;6(1):e15611.

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Casanova JL, Abel L, Quintana-Murci L, Human TLRs and IL-1Rs in host defense: natural insights from evolutionary, epidemiological, and clinical genetics, Annu. Rev. Immunol. 2011;29:447-91.

Lykhmus O, Koval L, Skok M, Zouridakis M, Zisimopoulou P, Tzartos S, Tsetlin V, Granon S, Changeux JP, Komisarenko S, Cloëz-Tayarani I, Antibodies against extracellular domains of α4 and α7 subunits alter the levels of nicotinic receptors in the mouse brain and affect memory: possible relevance to Alzheimer’s pathology, J. Alzheimers Dis. 2011;24(4):693-704.

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Aguilera A, Souza-Egipsy V, González-Toril E, Rendueles O, Amils R, Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermalhot springs, Int. Microbiol. 2010 Mar;13(1):21-32.

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Michael S, Travé G, Ramu C, Chica C, Gibson TJ, Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation, Bioinformatics 2008 Feb;24(4):453-7.

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Rocha EP, The organization of the bacterial genome, Annu. Rev. Genet. 2008;42:211-33.

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Parmeggiani F, Pellarin R, Larsen AP, Varadamsetty G, Stumpp MT, Zerbe O, Caflisch A, Plückthun A, Designed armadillo repeat proteins as general peptide-binding scaffolds: consensus design and computational optimization of the hydrophobic core, J. Mol. Biol. 2008 Mar;376(5):1282-304.

Magalon H, Patin E, Austerlitz F, Hegay T, Aldashev A, Quintana-Murci L, Heyer E, Population genetic diversity of the NAT2 gene supports a role of acetylation in human adaptation to farming in Central Asia, Eur. J. Hum. Genet. 2008 Feb;16(2):243-51.

Rossignol T, Lechat P, Cuomo C, Zeng Q, Moszer I, d'Enfert C, CandidaDB: a multi-genome database for Candida species and related Saccharomycotina, Nucleic Acids Res. 2008 Jan;36(Database issue):D557-61.

Lechat P, Hummel L, Rousseau S, Moszer I, GenoList: an integrated environment for comparative analysis of microbial genomes, Nucleic Acids Res. 2008 Jan;36(Database issue):D469-74.

Quintana-Murci L, Alcaïs A, Abel L, Casanova JL, Immunology in natura: clinical, epidemiological and evolutionary genetics of infectious diseases, Nat. Immunol. 2007 Nov;8(11):1165-71.

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Ben-Ali M, Barreiro LB, Chabbou A, Haltiti R, Braham E, Neyrolles O, Dellagi K, Gicquel B, Quintana-Murci L, Barbouche MR, Promoter and neck region length variation of DC-SIGN is not associated with susceptibility to tuberculosis in Tunisian patients, Hum. Immunol. 2007 Nov;68(11):908-12.

Pellarin R, Guarnera E, Caflisch A, Pathways and intermediates of amyloid fibril formation, J. Mol. Biol. 2007 Dec;374(4):917-24.

van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S, Struelens M, , Guidelines for the validation and application of typing methods for use in bacterial epidemiology, Clin. Microbiol. Infect. 2007 Oct;13 Suppl 3:1-46.

Ranwez V, Berry V, Criscuolo A, Fabre PH, Guillemot S, Scornavacca C, Douzery EJ, PhySIC: a veto supertree method with desirable properties, Syst. Biol. 2007 Oct;56(5):798-817.

Touchon M, Rocha EP, From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data, Biochimie 2008 Apr;90(4):648-59.

Zhang SY, Jouanguy E, Ugolini S, Smahi A, Elain G, Romero P, Segal D, Sancho-Shimizu V, Lorenzo L, Puel A, Picard C, Chapgier A, Plancoulaine S, Titeux M, Cognet C, von Bernuth H, Ku CL, Casrouge A, Zhang XX, Barreiro L, Leonard J, Hamilton C, Lebon P, Héron B, Vallée L, Quintana-Murci L, Hovnanian A, Rozenberg F, Vivier E, Geissmann F, Tardieu M, Abel L, Casanova JL, TLR3 deficiency in patients with herpes simplex encephalitis, Science 2007 Sep;317(5844):1522-7.

Bailly-Bechet M, Vergassola M, Rocha E, Causes for the intriguing presence of tRNAs in phages, Genome Res. 2007 Oct;17(10):1486-95.

Diancourt L, Passet V, Chervaux C, Garault P, Smokvina T, Brisse S, Multilocus sequence typing of Lactobacillus casei reveals a clonal population structure with low levels of homologous recombination, Appl. Environ. Microbiol. 2007 Oct;73(20):6601-11.

Salerno A, Delétoile A, Lefevre M, Ciznar I, Krovacek K, Grimont P, Brisse S, Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing, J. Bacteriol. 2007 Nov;189(21):7808-18.

Caignard G, Guerbois M, Labernardière JL, Jacob Y, Jones LM, , Wild F, Tangy F, Vidalain PO, Measles virus V protein blocks Jak1-mediated phosphorylation of STAT1 to escape IFN-alpha/beta signaling, Virology 2007 Nov;368(2):351-62.

Pietrosemoli N, Crespo A, Fernandez A, Dehydration propensity of order-disorder intermediate regions in soluble proteins, J. Proteome Res. 2007 Sep;6(9):3519-26.

Gómez-Valero L, Rocha EP, Latorre A, Silva FJ, Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction., Genome Res 2007 Aug; 17(8): 1178-85.

Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B, Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics, Mol. Cell Proteomics 2007 Oct;6(10):1741-8.

Brisse S, Iteman I, Schuffenecker I, Chikungunya outbreaks, N. Engl. J. Med. 2007 Jun;356(25):2650-2; author reply 2650-2.

Bonomi M, Gervasio FL, Tiana G, Provasi D, Broglia RA, Parrinello M, Insight into the folding inhibition of the HIV-1 protease by a small peptide, Biophys. J. 2007 Oct;93(8):2813-21.

Behar DM, Rosset S, Blue-Smith J, Balanovsky O, Tzur S, Comas D, Mitchell RJ, Quintana-Murci L, Tyler-Smith C, Wells RS, , The Genographic Project public participation mitochondrial DNA database, PLoS Genet. 2007 Jun;3(6):e104.

Roumagnac P, Brisse S, Weill FX, [Evolutionary history of Salmonella Typhi illustrates a new pattern of epidemiologic dynamics], Med Sci (Paris) 2007 May;23(5):455-6.

Besson M, Granon S, Mameli-Engvall M, Cloëz-Tayarani I, Maubourguet N, Cormier A, Cazala P, David V, Changeux JP, Faure P, Long-term effects of chronic nicotine exposure on brain nicotinic receptors, Proc. Natl. Acad. Sci. U.S.A. 2007 May;104(19):8155-60.

Touchon M, Rocha EP, Causes of insertion sequences abundance in prokaryotic genomes, Mol. Biol. Evol. 2007 Apr;24(4):969-81.

Ochman H, Liu R, Rocha EP, Erosion of interaction networks in reduced and degraded genomes, J. Exp. Zool. B Mol. Dev. Evol. 2007 Jan;308(1):97-103.

Stinear TP, Seemann T, Pidot S, Frigui W, Reysset G, Garnier T, Meurice G, Simon D, Bouchier C, Ma L, Tichit M, Porter JL, Ryan J, Johnson PD, Davies JK, Jenkin GA, Small PL, Jones LM, Tekaia F, Laval F, Daffé M, Parkhill J, Cole ST, Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer, Genome Res. 2007 Feb;17(2):192-200.

Chaix R, Quintana-Murci L, Hegay T, Hammer MF, Mobasher Z, Austerlitz F, Heyer E, From social to genetic structures in central Asia, Curr. Biol. 2007 Jan;17(1):43-8.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD, Integration of biological networks and gene expression data using Cytoscape, Nat Protoc 2007;2(10):2366-82.

Benedetto D, Caglioti E, Chica C, Compressing proteomes: the relevance of medium range correlations, EURASIP J Bioinform Syst Biol 2007;:60723.

Aschard H, Guedj M, Demenais F, , A two-step multiple-marker strategy for genome-wide association studies., BMC Proc 2007 ; 1 Suppl 1(): S134.

Dubé MP, Schmidt S, Hauser E, Darabi H, Li J, Barhdadi A, Wang X, Sha Q, Zhang Z, Wang T, Aschard H, Guedj M, Rohlfs R, Anderson A, Taylor C, Mirea L, Nickolov R, Milanov V, Yang HC, Song Y, Sinha R, , Multistage designs in the genomic era: providing balance in complex disease studies., Genet Epidemiol 2007 ; 31 Suppl 1(): S118-23.

Durand CM, Betancur C, Boeckers TM, Bockmann J, Chaste P, Fauchereau F, Nygren G, Rastam M, Gillberg IC, Anckarsäter H, Sponheim E, Goubran-Botros H, Delorme R, Chabane N, Mouren-Simeoni MC, de Mas P, Bieth E, Rogé B, Héron D, Burglen L, Gillberg C, Leboyer M, Bourgeron T, Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders, Nat. Genet. 2007 Jan;39(1):25-7.

Barreiro LB, Neyrolles O, Babb CL, van Helden PD, Gicquel B, Hoal EG, Quintana-Murci L, Length variation of DC-SIGN and L-SIGN neck-region has no impact on tuberculosis susceptibility, Hum. Immunol. 2007 Feb;68(2):106-12.

Chica C, Jost C, Féthière J, Reynaud EG, Adéquation Germany, meeting the needs of scientists in the developing world, Biotechnol J 2006 Dec;1(12):1347-50.

Garcia O, Saveanu C, Cline M, Fromont-Racine M, Jacquier A, Schwikowski B, Aittokallio T, GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring, Bioinformatics 2007 Feb;23(3):394-6.

Roumagnac P, Weill FX, Dolecek C, Baker S, Brisse S, Chinh NT, Le TA, Acosta CJ, Farrar J, Dougan G, Achtman M, Evolutionary history of Salmonella typhi, Science 2006 Nov;314(5803):1301-4.

Rieping W, Habeck M, Bardiaux B, Bernard A, Malliavin TE, Nilges M, ARIA2: automated NOE assignment and data integration in NMR structure calculation, Bioinformatics 2007 Feb;23(3):381-2.

Cloëz-Tayarani I, Changeux JP, Nicotine and serotonin in immune regulation and inflammatory processes: a perspective, J. Leukoc. Biol. 2007 Mar;81(3):599-606.

Rocha EP, Touchon M, Feil EJ, Similar compositional biases are caused by very different mutational effects, Genome Res. 2006 Dec;16(12):1537-47.

Barreiro LB, Quintana-Murci L, DC-SIGNR neck-region polymorphisms and HIV-1 susceptibility: From population stratification to a possible advantage of the 7/5 heterozygous genotype, J. Infect. Dis. 2006 Oct;194(8):1184-5; author reply 1185-7.

Achaz G, Boyer F, Rocha EP, Viari A, Coissac E, Repseek, a tool to retrieve approximate repeats from large DNA sequences, Bioinformatics 2007 Jan;23(1):119-21.

Criscuolo A, Berry V, Douzery EJ, Gascuel O, SDM: a fast distance-based approach for (super) tree building in phylogenomics, Syst. Biol. 2006 Oct;55(5):740-55.

Brisse S, Supply P, Brosch R, Vincent V, Gutierrez MC, “A re-evaluation of M. prototuberculosis”: continuing the debate, PLoS Pathog. 2006 Sep;2(9):e95.

Hurst LD, Feil EJ, Rocha EP, Protein evolution: causes of trends in amino-acid gain and loss, Nature 2006 Aug;442(7105):E11-2; discussion E12.

Verdu P, Barreiro LB, Patin E, Gessain A, Cassar O, Kidd JR, Kidd KK, Behar DM, Froment A, Heyer E, Sica L, Casanova JL, Abel L, Quintana-Murci L, Evolutionary insights into the high worldwide prevalence of MBL2 deficiency alleles, Hum. Mol. Genet. 2006 Sep;15(17):2650-8.

Ecker JA, Massire C, Hall TA, Ranken R, Pennella TT, Agasino Ivy C, Blyn LB, Hofstadler SA, Endy TP, Scott PT, Lindler L, Hamilton T, Gaddy C, Snow K, Pe M, Fishbain J, Craft D, Deye G, Riddell S, Milstrey E, Petruccelli B, Brisse S, Harpin V, Schink A, Ecker DJ, Sampath R, Eshoo MW, Identification of Acinetobacter species and genotyping of Acinetobacter baumannii by multilocus PCR and mass spectrometry, J. Clin. Microbiol. 2006 Aug;44(8):2921-32.

Neyrolles O, Gicquel B, Quintana-Murci L, Towards a crucial role for DC-SIGN in tuberculosis and beyond, Trends Microbiol. 2006 Sep;14(9):383-7.

Aittokallio T, Schwikowski B, Graph-based methods for analysing networks in cell biology, Brief. Bioinformatics 2006 Sep;7(3):243-55.

Cordier F, Hartmann B, Rogowski M, Affolter M, Grzesiek S, DNA recognition by the brinker repressor–an extreme case of coupling between binding and folding, J. Mol. Biol. 2006 Aug;361(4):659-72.

Patin E, Harmant C, Kidd KK, Kidd J, Froment A, Mehdi SQ, Sica L, Heyer E, Quintana-Murci L, Sub-Saharan African coding sequence variation and haplotype diversity at the NAT2 gene, Hum. Mutat. 2006 Jul;27(7):720.

Iverson-Cabral SL, Astete SG, Cohen CR, Rocha EP, Totten PA, Intrastrain heterogeneity of the mgpB gene in Mycoplasma genitalium is extensive in vitro and in vivo and suggests that variation is generated via recombination with repetitive chromosomal sequences, Infect. Immun. 2006 Jul;74(7):3715-26.

Rocha EP, The quest for the universals of protein evolution, Trends Genet. 2006 Aug;22(8):412-6.

Pellarin R, Caflisch A, Interpreting the aggregation kinetics of amyloid peptides, J. Mol. Biol. 2006 Jul;360(4):882-92.

Cabal GG, Genovesio A, Rodriguez-Navarro S, Zimmer C, Gadal O, Lesne A, Buc H, Feuerbach-Fournier F, Olivo-Marin JC, Hurt EC, Nehrbass U, SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope, Nature 2006 Jun;441(7094):770-3.

Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, Lavenir R, Pardigon N, Reynes JM, Pettinelli F, Biscornet L, Diancourt L, Michel S, Duquerroy S, Guigon G, Frenkiel MP, Bréhin AC, Cubito N, Desprès P, Kunst F, Rey FA, Zeller H, Brisse S, Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak, PLoS Med. 2006 Jul;3(7):e263.

Swidan F, Rocha EP, Shmoish M, Pinter RY, An integrative method for accurate comparative genome mapping, PLoS Comput. Biol. 2006 Aug;2(8):e75.

Sprague BL, Müller F, Pego RL, Bungay PM, Stavreva DA, McNally JG, Analysis of binding at a single spatially localized cluster of binding sites by fluorescence recovery after photobleaching, Biophys. J. 2006 Aug;91(4):1169-91.

Barreiro LB, Quach H, Krahenbuhl J, Khaliq S, Mohyuddin A, Mehdi SQ, Gicquel B, Neyrolles O, Quintana-Murci L, DC-SIGN interacts with Mycobacterium leprae but sequence variation in this lectin is not associated with leprosy in the Pakistani population, Hum. Immunol. 2006 Jan-Feb;67(1-2):102-7.

Dey N, Blanc-Feraud L, Zimmer C, Roux P, Kam Z, Olivo-Marin JC, Zerubia J, Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution, Microsc. Res. Tech. 2006 Apr;69(4):260-6.

Oliveira PH, Batagov A, Ward J, Baganz F, Krabben P, Identification of erythrobactin, a hydroxamate-type siderophore produced by Saccharopolyspora erythraea, Lett. Appl. Microbiol. 2006 Apr;42(4):375-80.

Fischer G, Rocha EP, Brunet F, Vergassola M, Dujon B, Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages, PLoS Genet. 2006 Mar;2(3):e32.

Rosas-Magallanes V, Deschavanne P, Quintana-Murci L, Brosch R, Gicquel B, Neyrolles O, Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis, Mol. Biol. Evol. 2006 Jun;23(6):1129-35.

Couturier E, Rocha EP, Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes, Mol. Microbiol. 2006 Mar;59(5):1506-18.

Bardiaux B, Malliavin TE, Nilges M, Mazur AK, Comparison of different torsion angle approaches for NMR structure determination, J. Biomol. NMR 2006 Mar;34(3):153-66.

Koszul R, Dujon B, Fischer G, Stability of large segmental duplications in the yeast genome, Genetics 2006 Apr;172(4):2211-22.

Blazquez S, Zimmer C, Guigon G, Olivo-Marin JC, Guillén N, Labruyère E, Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica, Infect. Immun. 2006 Feb;74(2):1407-11.

Patin E, Barreiro LB, Sabeti PC, Austerlitz F, Luca F, Sajantila A, Behar DM, Semino O, Sakuntabhai A, Guiso N, Gicquel B, McElreavey K, Harding RM, Heyer E, Quintana-Murci L, Deciphering the ancient and complex evolutionary history of human arylamine N-acetyltransferase genes, Am. J. Hum. Genet. 2006 Mar;78(3):423-36.

Behar DM, Metspalu E, Kivisild T, Achilli A, Hadid Y, Tzur S, Pereira L, Amorim A, Quintana-Murci L, Majamaa K, Herrnstadt C, Howell N, Balanovsky O, Kutuev I, Pshenichnov A, Gurwitz D, Bonne-Tamir B, Torroni A, Villems R, Skorecki K, The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event, Am. J. Hum. Genet. 2006 Mar;78(3):487-97.

Barreiro LB, Neyrolles O, Babb CL, Tailleux L, Quach H, McElreavey K, Helden PD, Hoal EG, Gicquel B, Quintana-Murci L, Promoter variation in the DC-SIGN-encoding gene CD209 is associated with tuberculosis, PLoS Med. 2006 Feb;3(2):e20.

Quintana-Murci L, [Natural selection of DC-SIGN and its homologues L-SIGN and mSIGNR1 in pathogen recognition and innate immunity], Med Sci (Paris) 2006 Jan;22(1):29-32.

Durand CM, Kappeler C, Betancur C, Delorme R, Quach H, Goubran-Botros H, Melke J, Nygren G, Chabane N, Bellivier F, Szoke A, Schurhoff F, Rastam M, Anckarsäter H, Gillberg C, Leboyer M, Bourgeron T, Expression and genetic variability of PCDH11Y, a gene specific to Homo sapiens and candidate for susceptibility to psychiatric disorders, Am. J. Med. Genet. B Neuropsychiatr. Genet. 2006 Jan;141B(1):67-70.

Molles BE, Maskos U, Pons S, Besson M, Guiard P, Guilloux JP, Evrard A, Cormier A, Mameli-Engvall M, Cloëz-Tayarani I, Nakatani H, Dufour N, Bemelmans AP, Mallet J, Cazala P, Gardier AM, David V, Faure P, Granon S, Changeux JP, , Targeted in vivo expression of nicotinic acetylcholine receptors in mouse brain using lentiviral expression vectors., J. Mol. Neurosci. 2006 ; 30(1-2): 105-6.

Tournier JM, Maouche K, Coraux C, Zahm JM, Cloëz-Tayarani I, Nawrocki-Raby B, Bonnomet A, Burlet H, Lebargy F, Polette M, Birembaut P, alpha3alpha5beta2-Nicotinic acetylcholine receptor contributes to the wound repair of the respiratory epithelium by modulating intracellular calcium in migrating cells, Am. J. Pathol. 2006 Jan;168(1):55-68.

Coppo P, Wolf M, Veyradier A, Bussel A, Malot S, Millot GA, Daubin C, Bordessoule D, Pène F, Mira JP, Heshmati F, Maury E, Guidet B, Boulanger E, Galicier L, Parquet N, Vernant JP, Rondeau E, Azoulay E, Schlemmer B, , Prognostic value of inhibitory anti-ADAMTS13 antibodies in adult-acquired thrombotic thrombocytopenic purpura, Br. J. Haematol. 2006 Jan;132(1):66-74.

Fevre C, Passet V, Weill FX, Grimont PA, Brisse S, Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B, Antimicrob. Agents Chemother. 2005 Dec;49(12):5149-52.

Abbott et al., Upper limits on a stochastic background of gravitational waves, Phys. Rev. Lett. 2005 Nov;95(22):221101.

Rocha EP, Inference and analysis of the relative stability of bacterial chromosomes, Mol. Biol. Evol. 2006 Mar;23(3):513-22.

Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B, Signal maps for mass spectrometry-based comparative proteomics, Mol. Cell Proteomics 2006 Mar;5(3):423-32.

Zimmer C, Olivo-Marin JC, Coupled parametric active contours, IEEE Trans Pattern Anal Mach Intell 2005 Nov;27(11):1838-42.

De Champs C, Vellin JF, Diancourt L, Brisse S, Kemeny JL, Gilain L, Mom T, Laryngeal scleroma associated with Klebsiella pneumoniae subsp. ozaenae, J. Clin. Microbiol. 2005 Nov;43(11):5811-3.

Zhang N, Li XJ, Ye M, Pan S, Schwikowski B, Aebersold R, ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer, Proteomics 2005 Nov;5(16):4096-106.

Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ, Comparisons of dN/dS are time dependent for closely related bacterial genomes, J. Theor. Biol. 2006 Mar;239(2):226-35.

Tartaglia GG, Cavalli A, Pellarin R, Caflisch A, Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences, Protein Sci. 2005 Oct;14(10):2723-34.

Barreiro LB, Patin E, Neyrolles O, Cann HM, Gicquel B, Quintana-Murci L, The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region, Am. J. Hum. Genet. 2005 Nov;77(5):869-86.

Médigue C, Krin E, Pascal G, Barbe V, Bernsel A, Bertin PN, Cheung F, Cruveiller S, D'Amico S, Duilio A, Fang G, Feller G, Ho C, Mangenot S, Marino G, Nilsson J, Parrilli E, Rocha EP, Rouy Z, Sekowska A, Tutino ML, Vallenet D, von Heijne G, Danchin A, Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125, Genome Res. 2005 Oct;15(10):1325-35.

Tartaglia GG, Pellarin R, Cavalli A, Caflisch A, Organism complexity anti-correlates with proteomic beta-aggregation propensity, Protein Sci. 2005 Oct;14(10):2735-40.

Dufour A, Shinin V, Tajbakhsh S, Guillén-Aghion N, Olivo-Marin JC, Zimmer C, Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces, IEEE Trans Image Process 2005 Sep;14(9):1396-410.

Marqué S, Poirel L, Héritier C, Brisse S, Blasco MD, Filip R, Coman G, Naas T, Nordmann P, Regional occurrence of plasmid-mediated carbapenem-hydrolyzing oxacillinase OXA-58 in Acinetobacter spp. in Europe, J. Clin. Microbiol. 2005 Sep;43(9):4885-8.

Huys G, Cnockaert M, Nemec A, Dijkshoorn L, Brisse S, Vaneechoutte M, Swings J, Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains, J. Med. Microbiol. 2005 Sep;54(Pt 9):851-6.

Hubert JF, Duchesne L, Delamarche C, Vaysse A, Gueuné H, Raguénès-Nicol C, Pore selectivity analysis of an aquaglyceroporin by stopped-flow spectrophotometry on bacterial cell suspensions, Biol. Cell 2005 Sep;97(9):675-86.

Rocha EP, Cornet E, Michel B, Comparative and evolutionary analysis of the bacterial homologous recombination systems, PLoS Genet. 2005 Aug;1(2):e15.

Gutierrez MC, Brisse S, Brosch R, Fabre M, Omaïs B, Marmiesse M, Supply P, Vincent V, Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis, PLoS Pathog. 2005 Sep;1(1):e5.

Diancourt L, Passet V, Verhoef J, Grimont PA, Brisse S, Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates, J. Clin. Microbiol. 2005 Aug;43(8):4178-82.

Fevre C, Jbel M, Passet V, Weill FX, Grimont PA, Brisse S, Six groups of the OXY beta-Lactamase evolved over millions of years in Klebsiella oxytoca, Antimicrob. Agents Chemother. 2005 Aug;49(8):3453-62.

Mrsic-Flogel TD, Hofer SB, Creutzfeldt C, Cloëz-Tayarani I, Changeux JP, Bonhoeffer T, Hübener M, Altered map of visual space in the superior colliculus of mice lacking early retinal waves, J. Neurosci. 2005 Jul;25(29):6921-8.

Fang G, Rocha E, Danchin A, How essential are nonessential genes?, Mol. Biol. Evol. 2005 Nov;22(11):2147-56.

Maskos U, Molles BE, Pons S, Besson M, Guiard BP, Guilloux JP, Evrard A, Cazala P, Cormier A, Mameli-Engvall M, Dufour N, Cloëz-Tayarani I, Bemelmans AP, Mallet J, Gardier AM, David V, Faure P, Granon S, Changeux JP, , Nicotine reinforcement and cognition restored by targeted expression of nicotinic receptors., Nature 2005 Jul; 436(7047): 103-7.

Reiss DJ, Avila-Campillo I, Thorsson V, Schwikowski B, Galitski T, Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection, BMC Bioinformatics 2005;6:154.

Abbott et al., Limits on gravitational-wave emission from selected pulsars using LIGO data, Phys. Rev. Lett. 2005 May;94(18):181103.

Loeillet S, Palancade B, Cartron M, Thierry A, Richard GF, Dujon B, Doye V, Nicolas A, Genetic network interactions among replication, repair and nuclear pore deficiencies in yeast, DNA Repair (Amst.) 2005 Apr;4(4):459-68.

Carretto E, Barbarini D, Couto I, De Vitis D, Marone P, Verhoef J, De Lencastre H, Brisse S, Identification of coagulase-negative staphylococci other than Staphylococcus epidermidis by automated ribotyping, Clin. Microbiol. Infect. 2005 Mar;11(3):177-84.

Brisse S, Duijkeren Ev, Identification and antimicrobial susceptibility of 100 Klebsiella animal clinical isolates, Vet. Microbiol. 2005 Feb;105(3-4):307-12.

Coudrier E, Amblard F, Zimmer C, Roux P, Olivo-Marin JC, Rigothier MC, Guillén N, Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica, Cell. Microbiol. 2005 Jan;7(1):19-27.

Quintana-Murci L, Gal I, Bakhan T, Quach H, Sayar SH, Shiri-Sverdlov R, Baruch RG, McElreavey K, Dagan E, Narod S, Friedman E, The Tyr978X BRCA1 mutation: occurrence in non-Jewish Iranians and haplotype in French-Canadian and non-Ashkenazi Jews, Fam. Cancer 2005;4(2):85-8.

Figueiredo LM, Rocha EP, Mancio-Silva L, Prevost C, Hernandez-Verdun D, Scherf A, , The unusually large Plasmodium telomerase reverse-transcriptase localizes in a discrete compartment associated with the nucleolus., Nucleic Acids Res 2005 ; 33(3): 1111-22.

d'Enfert C, Goyard S, Rodriguez-Arnaveilhe S, Frangeul L, Jones L, Tekaia F, Bader O, Albrecht A, Castillo L, Dominguez A, Ernst JF, Fradin C, Gaillardin C, Garcia-Sanchez S, de Groot P, Hube B, Klis FM, Krishnamurthy S, Kunze D, Lopez MC, Mavor A, Martin N, Moszer I, Onésime D, Perez Martin J, Sentandreu R, Valentin E, Brown AJ, CandidaDB: a genome database for Candida albicans pathogenomics, Nucleic Acids Res. 2005 Jan;33(Database issue):D353-7.

Cloëz-Tayarani I, Kayyali US, Fanburg BL, Cavaillon JM, 5-HT activates ERK MAP kinase in cultured-human peripheral blood mononuclear cells via 5-HT1A receptors, Life Sci. 2004 Dec;76(4):429-43.

Nemec A, Dolzani L, Brisse S, van den Broek P, Dijkshoorn L, Diversity of aminoglycoside-resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones, J. Med. Microbiol. 2004 Dec;53(Pt 12):1233-40.

Gorfe AA, Pellarin R, Caflisch A, Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations, J. Am. Chem. Soc. 2004 Nov;126(46):15277-86.

Rocha EP, Codon usage bias from tRNA’s point of view: redundancy, specialization, and efficient decoding for translation optimization, Genome Res. 2004 Nov;14(11):2279-86.

Chaix R, Austerlitz F, Khegay T, Jacquesson S, Hammer MF, Heyer E, Quintana-Murci L, The genetic or mythical ancestry of descent groups: lessons from the Y chromosome, Am. J. Hum. Genet. 2004 Dec;75(6):1113-6.

Rocha EP, Order and disorder in bacterial genomes, Curr. Opin. Microbiol. 2004 Oct;7(5):519-27.

Brisse S, Cordevant C, Vandamme P, Bidet P, Loukil C, Chabanon G, Lange M, Bingen E, Species distribution and ribotype diversity of Burkholderia cepacia complex isolates from French patients with cystic fibrosis, J. Clin. Microbiol. 2004 Oct;42(10):4824-7.

Brisse S, van Himbergen T, Kusters K, Verhoef J, Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates, Clin. Microbiol. Infect. 2004 Oct;10(10):942-5.

Brisse S, Issenhuth-Jeanjean S, Grimont PA, Molecular serotyping of Klebsiella species isolates by restriction of the amplified capsular antigen gene cluster, J. Clin. Microbiol. 2004 Aug;42(8):3388-98.

Reiss DJ, Schwikowski B, Predicting protein-peptide interactions via a network-based motif sampler, Bioinformatics 2004 Aug;20 Suppl 1:i274-82.

Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL, Genome evolution in yeasts, Nature 2004 Jul;430(6995):35-44.

Frischknecht F, Baldacci P, Martin B, Zimmer C, Thiberge S, Olivo-Marin JC, Shorte SL, Ménard R, Imaging movement of malaria parasites during transmission by Anopheles mosquitoes, Cell. Microbiol. 2004 Jul;6(7):687-94.

Haeggman S, Löfdahl S, Paauw A, Verhoef J, Brisse S, Diversity and evolution of the class A chromosomal beta-lactamase gene in Klebsiella pneumoniae, Antimicrob. Agents Chemother. 2004 Jul;48(7):2400-8.

Coppo P, Bengoufa D, Veyradier A, Wolf M, Bussel A, Millot GA, Malot S, Heshmati F, Mira JP, Boulanger E, Galicier L, Durey-Dragon MA, Frémeaux-Bacchi V, Ramakers M, Pruna A, Bordessoule D, Gouilleux V, Scrobohaci ML, Vernant JP, Moreau D, Azoulay E, Schlemmer B, Guillevin L, Lassoued K, , Severe ADAMTS13 deficiency in adult idiopathic thrombotic microangiopathies defines a subset of patients characterized by various autoimmune manifestations, lower platelet count, and mild renal involvement, Medicine (Baltimore) 2004 Jul;83(4):233-44.

Lambert A, Fontaine JF, Legendre M, Leclerc F, Permal E, Major F, Putzer H, Delfour O, Michot B, Gautheret D, The ERPIN server: an interface to profile-based RNA motif identification, Nucleic Acids Res. 2004 Jul;32(Web Server issue):W160-5.

Wang Y, Rocha EP, Leung FC, Danchin A, Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes, J. Mol. Evol. 2004 Jun;58(6):692-700.

Rocha EP, The replication-related organization of bacterial genomes, Microbiology (Reading, Engl.) 2004 Jun;150(Pt 6):1609-27.

Tartaglia GG, Cavalli A, Pellarin R, Caflisch A, The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates, Protein Sci. 2004 Jul;13(7):1939-41.

Behar DM, Hammer MF, Garrigan D, Villems R, Bonne-Tamir B, Richards M, Gurwitz D, Rosengarten D, Kaplan M, Della Pergola S, Quintana-Murci L, Skorecki K, MtDNA evidence for a genetic bottleneck in the early history of the Ashkenazi Jewish population, Eur. J. Hum. Genet. 2004 May;12(5):355-64.

Blondel A, Ensemble variance in free energy calculations by thermodynamic integration: theory, optimal “Alchemical” path, and practical solutions, J Comput Chem 2004 May;25(7):985-93.

Quintana-Murci L, Chaix R, Wells RS, Behar DM, Sayar H, Scozzari R, Rengo C, Al-Zahery N, Semino O, Santachiara-Benerecetti AS, Coppa A, Ayub Q, Mohyuddin A, Tyler-Smith C, Qasim Mehdi S, Torroni A, McElreavey K, Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor, Am. J. Hum. Genet. 2004 May;74(5):827-45.

van Dessel H, Dijkshoorn L, van der Reijden T, Bakker N, Paauw A, van den Broek P, Verhoef J, Brisse S, Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals, Res. Microbiol. 2004 Mar;155(2):105-12.

Millot GA, Vainchenker W, Duménil D, Svinarchuk F, Differential signalling of NH2-terminal flag-labelled thrombopoietin receptor activated by TPO or anti-FLAG antibodies, Cell. Signal. 2004 Mar;16(3):355-63.

Quintana-Murci L, Bigham A, Rouba H, Barakat A, McElreavey K, Hammer M, Y-chromosomal STR haplotypes in Berber and Arabic-speaking populations from Morocco, Forensic Sci. Int. 2004 Feb;140(1):113-5.

Behar DM, Garrigan D, Kaplan ME, Mobasher Z, Rosengarten D, Karafet TM, Quintana-Murci L, Ostrer H, Skorecki K, Hammer MF, Contrasting patterns of Y chromosome variation in Ashkenazi Jewish and host non-Jewish European populations, Hum. Genet. 2004 Mar;114(4):354-65.

Boyer J, Badis G, Fairhead C, Talla E, Hantraye F, Fabre E, Fischer G, Hennequin C, Koszul R, Lafontaine I, Ozier-Kalogeropoulos O, Ricchetti M, Richard GF, Thierry A, Dujon B, , Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae., Genome Biol 2004 ; 5(9): R72.

Krausz C, Quintana-Murci L, Forti G, Y chromosome polymorphisms in medicine, Ann. Med. 2004;36(8):573-83.

Jonas D, Spitzmüller B, Daschner FD, Verhoef J, Brisse S, Discrimination of Klebsiella pneumoniae and Klebsiella oxytoca phylogenetic groups and other Klebsiella species by use of amplified fragment length polymorphism, Res. Microbiol. 2004 Jan-Feb;155(1):17-23.

Ben-Dor A, Hartman T, Karp RM, Schwikowski B, Sharan R, Yakhini Z, Towards optimally multiplexed applications of universal arrays, J. Comput. Biol. 2004;11(2-3):476-92.

Dam J, Blondel A, Effect of multiple symmetries on the association of R67 DHFR subunits bearing interfacial complementing mutations, Protein Sci. 2004 Jan;13(1):1-14.

Koszul R, Caburet S, Dujon B, Fischer G, Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments, EMBO J. 2004 Jan;23(1):234-43.

Rocha EP, Danchin A, Gene essentiality determines chromosome organisation in bacteria, Nucleic Acids Res. 2003 Nov;31(22):6570-7.

Rocha EP, DNA repeats lead to the accelerated loss of gene order in bacteria, Trends Genet. 2003 Nov;19(11):600-3.

Onteniente L, Brisse S, Tassios PT, Vergnaud G, Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing, J. Clin. Microbiol. 2003 Nov;41(11):4991-7.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T, Cytoscape: a software environment for integrated models of biomolecular interaction networks, Genome Res. 2003 Nov;13(11):2498-504.

Jamain S, Betancur C, Giros B, Leboyer M, Bourgeron T, [Genetics of autism: from genome scans to candidate genes], Med Sci (Paris) 2003 Nov;19(11):1081-90.

Rocha EP, Danchin A, An analysis of determinants of amino acids substitution rates in bacterial proteins, Mol. Biol. Evol. 2004 Jan;21(1):108-16.

Maufrais C, Fazakerley GV, Cadet J, Boulard Y, Structural study of DNA duplex containing an N-(2-deoxy-beta-D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics, Nucleic Acids Res. 2003 Oct;31(20):5930-40.

Zei G, Lisa A, Fiorani O, Magri C, Quintana-Murci L, Semino O, Santachiara-Benerecetti AS, From surnames to the history of Y chromosomes: the Sardinian population as a paradigm, Eur. J. Hum. Genet. 2003 Oct;11(10):802-7.

Kovtunovych G, Lytvynenko T, Negrutska V, Lar O, Brisse S, Kozyrovska N, Identification of Klebsiella oxytoca using a specific PCR assay targeting the polygalacturonase pehX gene, Res. Microbiol. 2003 Oct;154(8):587-92.

van Westreenen M, Paauw A, Fluit AC, Brisse S, van Dijk W, Verhoef J, Occurrence and spread of SHV extended-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in Curacao, J. Antimicrob. Chemother. 2003 Sep;52(3):530-2.

Achaz G, Coissac E, Netter P, Rocha EP, Associations between inverted repeats and the structural evolution of bacterial genomes, Genetics 2003 Aug;164(4):1279-89.

Rocha EP, Fralick J, Vediyappan G, Danchin A, Norris V, A strand-specific model for chromosome segregation in bacteria, Mol. Microbiol. 2003 Aug;49(4):895-903.

Rocha EP, Danchin A, Essentiality, not expressiveness, drives gene-strand bias in bacteria, Nat. Genet. 2003 Aug;34(4):377-8.

McElreavey K, Quintana-Murci L, Male reproductive function and the human Y chromosome: is selection acting on the Y?, Reprod. Biomed. Online 2003 Jul-Aug;7(1):17-23.

Yeramian E, Jones L, GeneFizz: A web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives, Nucleic Acids Res. 2003 Jul;31(13):3843-9.

Coppo P, Dusanter-Fourt I, Millot G, Nogueira MM, Dugray A, Bonnet ML, Mitjavila-Garcia MT, Le Pesteur D, Guilhot F, Vainchenker W, Sainteny F, Turhan AG, Constitutive and specific activation of STAT3 by BCR-ABL in embryonic stem cells, Oncogene 2003 Jun;22(26):4102-10.

Quintana-Murci L, Veitia R, Fellous M, Semino O, Poloni ES, Genetic structure of Mediterranean populations revealed by Y-chromosome haplotype analysis, Am. J. Phys. Anthropol. 2003 Jun;121(2):157-71.

Rocha EP, An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction, Genome Res. 2003 Jun;13(6A):1123-32.

Barnabe C, Brisse S, Tibayrenc M, Phylogenetic diversity of bat trypanosomes of subgenus Schizotrypanum based on multilocus enzyme electrophoresis, random amplified polymorphic DNA, and cytochrome b nucleotide sequence analyses, Infect. Genet. Evol. 2003 Feb;2(3):201-8.

Brisse S, Henriksson J, Barnabé C, Douzery EJ, Berkvens D, Serrano M, De Carvalho MR, Buck GA, Dujardin JC, Tibayrenc M, Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype, Infect. Genet. Evol. 2003 Feb;2(3):173-83.

Cloëz-Tayarani I, Petit-Bertron AF, Venters HD, Cavaillon JM, Differential effect of serotonin on cytokine production in lipopolysaccharide-stimulated human peripheral blood mononuclear cells: involvement of 5-hydroxytryptamine2A receptors, Int. Immunol. 2003 Feb;15(2):233-40.

Jovanic T, , Studying neural circuits of decision-making in Drosophila larva., J Neurogenet 2020 03; 34(1): 162-170.

Labruyère E, Zimmer C, Galy V, Olivo-Marin JC, Guillén N, EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis, J. Cell. Sci. 2003 Jan;116(Pt 1):61-71.

McElreavey K, Quintana-Murci L, Y chromosome haplogroups: a correlation with testicular dysgenesis syndrome?, APMIS 2003 Jan;111(1):106-13; discussion 114.

Ben-Dor A, Karp RM, Schwikowski B, Shamir R, The restriction scaffold problem, J. Comput. Biol. 2003;10(3-4):385-98.

Bourgeron T, Giros B, Genetic markers in psychiatric genetics, Methods Mol. Med. 2003;77:63-98.

Das V, Nal B, Roumier A, Meas-Yedid V, Zimmer C, Olivo-Marin JC, Roux P, Ferrier P, Dautry-Varsat A, Alcover A, Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation, Immunol. Rev. 2002 Nov;189:123-35.

Wielders CL, Fluit AC, Brisse S, Verhoef J, Schmitz FJ, mecA gene is widely disseminated in Staphylococcus aureus population, J. Clin. Microbiol. 2002 Nov;40(11):3970-5.

Patsalis PC, Sismani C, Quintana-Murci L, Taleb-Bekkouche F, Krausz C, McElreavey K, Effects of transmission of Y chromosome AZFc deletions, Lancet 2002 Oct;360(9341):1222-4.

Bandelt HJ, Quintana-Murci L, Salas A, Macaulay V, The fingerprint of phantom mutations in mitochondrial DNA data, Am. J. Hum. Genet. 2002 Nov;71(5):1150-60.

Rocha EP, Pradillon O, Bui H, Sayada C, Denamur E, A new family of highly variable proteins in the Chlamydophila pneumoniae genome, Nucleic Acids Res. 2002 Oct;30(20):4351-60.

Zimmer C, Labruyère E, Meas-Yedid V, Guillén N, Olivo-Marin JC, Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing, IEEE Trans Med Imaging 2002 Oct;21(10):1212-21.

Manni F, Leonardi P, Barakat A, Rouba H, Heyer E, Klintschar M, McElreavey K, Quintana-Murci L, Y-chromosome analysis in Egypt suggests a genetic regional continuity in Northeastern Africa, Hum. Biol. 2002 Oct;74(5):645-58.

Leverstein-van Hall MA, Fluit AC, Paauw A, Box AT, Brisse S, Verhoef J, Evaluation of the Etest ESBL and the BD Phoenix, VITEK 1, and VITEK 2 automated instruments for detection of extended-spectrum beta-lactamases in multiresistant Escherichia coli and Klebsiella spp, J. Clin. Microbiol. 2002 Oct;40(10):3703-11.

Zhang N, Aebersold R, Schwikowski B, ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data, Proteomics 2002 Oct;2(10):1406-12.

Rocha E, Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?, Trends Microbiol. 2002 Sep;10(9):393-5.

Achaz G, Rocha EP, Netter P, Coissac E, Origin and fate of repeats in bacteria, Nucleic Acids Res. 2002 Jul;30(13):2987-94.

Maufrais C, Boulard Y, Solution structure of a DNA duplex containing a formamide-adenine base pair, Can. J. Physiol. Pharmacol. 2002 Jul;80(7):609-17.

Rocha EP, Danchin A, Base composition bias might result from competition for metabolic resources, Trends Genet. 2002 Jun;18(6):291-4.

van Dessel H, Kamp-Hopmans TE, Fluit AC, Brisse S, de Smet AM, Dijkshoorn L, Troelstra A, Verhoef J, Mascini EM, Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit, J. Hosp. Infect. 2002 Jun;51(2):89-95.

Brisse S, Fussing V, Ridwan B, Verhoef J, Willems RJ, Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates, J. Clin. Microbiol. 2002 Jun;40(6):1977-84.

Chureau C, Prissette M, Bourdet A, Barbe V, Cattolico L, Jones L, Eggen A, Avner P, Duret L, Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine, Genome Res. 2002 Jun;12(6):894-908.

Millot GA, Vainchenker W, Duménil D, Svinarchuk F, Distinct effects of thrombopoietin depending on a threshold level of activated Mpl in BaF-3 cells, J. Cell. Sci. 2002 Jun;115(Pt 11):2329-37.

Rocha EP, Blanchard A, Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution, Nucleic Acids Res. 2002 May;30(9):2031-42.

Rocha EP, Matic I, Taddei F, Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?, Nucleic Acids Res. 2002 May;30(9):1886-94.

Brisse S, Stefani S, Verhoef J, Van Belkum A, Vandamme P, Goessens W, Comparative evaluation of the BD Phoenix and VITEK 2 automated instruments for identification of isolates of the Burkholderia cepacia complex, J. Clin. Microbiol. 2002 May;40(5):1743-8.

Henriksson J, Dujardin JC, Barnabé C, Brisse S, Timperman G, Venegas J, Pettersson U, Tibayrenc M, Solari A, Chromosomal size variation in Trypanosoma cruzi is mainly progressive and is evolutionarily informative, Parasitology 2002 Mar;124(Pt 3):277-86.

Filippi MD, Porteu F, Le Pesteur F, Schiavon V, Millot GA, Vainchenker W, de Sauvage FJ, Dubart Kupperschmitt A, Sainteny F, Requirement for mitogen-activated protein kinase activation in the response of embryonic stem cell-derived hematopoietic cells to thrombopoietin in vitro, Blood 2002 Feb;99(4):1174-82.

Millot GA, Feger F, Garçon L, Vainchenker W, Dumenil D, Svinarchuk F, MplK, a natural variant of the thrombopoietin receptor with a truncated cytoplasmic domain, binds thrombopoietin but does not interfere with thrombopoietin-mediated cell growth, Exp. Hematol. 2002 Feb;30(2):166-75.

Ideker T, Ozier O, Schwikowski B, Siegel AF, Discovering regulatory and signalling circuits in molecular interaction networks, Bioinformatics 2002;18 Suppl 1:S233-40.

Blanchette M, Schwikowski B, Tompa M, Algorithms for phylogenetic footprinting, J. Comput. Biol. 2002;9(2):211-23.

Moszer I, Jones LM, Moreira S, Fabry C, Danchin A, SubtiList: the reference database for the Bacillus subtilis genome, Nucleic Acids Res. 2002 Jan;30(1):62-5.

Jones L, Moszer I, Cole ST, Leproma: a Mycobacterium leprae genome browser, Lepr Rev 2001 Dec;72(4):470-7.

Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P, Chakraborty T, Charbit A, Chetouani F, Couvé E, de Daruvar A, Dehoux P, Domann E, Domínguez-Bernal G, Duchaud E, Durant L, Dussurget O, Entian KD, Fsihi H, García-del Portillo F, Garrido P, Gautier L, Goebel W, Gómez-López N, Hain T, Hauf J, Jackson D, Jones LM, Kaerst U, Kreft J, Kuhn M, Kunst F, Kurapkat G, Madueno E, Maitournam A, Vicente JM, Ng E, Nedjari H, Nordsiek G, Novella S, de Pablos B, Pérez-Diaz JC, Purcell R, Remmel B, Rose M, Schlueter T, Simoes N, Tierrez A, Vázquez-Boland JA, Voss H, Wehland J, Cossart P, , Comparative genomics of Listeria species., Science 2001 Oct; 294(5543): 849-52.

Rocha EP, Danchin A, Ongoing evolution of strand composition in bacterial genomes, Mol. Biol. Evol. 2001 Sep;18(9):1789-99.

Brisse S, Verhoef J, Tibayrenc M, Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages, Int. J. Parasitol. 2001 Sep;31(11):1218-26.

Fitch W, Brisse S, Stevens J, Tibayrenc M, Infectious diseases and the golden age of phylogenetics: an E-debate, Infect. Genet. Evol. 2001 Jul;1(1):69-74.

Rocha EP, Danchin A, Viari A, Evolutionary role of restriction/modification systems as revealed by comparative genome analysis, Genome Res. 2001 Jun;11(6):946-58.

Wielders CL, Vriens MR, Brisse S, de Graaf-Miltenburg LA, Troelstra A, Fleer A, Schmitz FJ, Verhoef J, Fluit AC, In-vivo transfer of mecA DNA to Staphylococcus aureus [corrected], Lancet 2001 May;357(9269):1674-5.

Chambaud I, Heilig R, Ferris S, Barbe V, Samson D, Galisson F, Moszer I, Dybvig K, Wróblewski H, Viari A, Rocha EP, Blanchard A, The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis, Nucleic Acids Res. 2001 May;29(10):2145-53.

Brisse S, Verhoef J, Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping, Int. J. Syst. Evol. Microbiol. 2001 May;51(Pt 3):915-24.

Millot GA, Svinarchuk F, Lacout C, Vainchenker W, Dumenil D, The granulocyte colony-stimulating factor receptor supports erythroid differentiation in the absence of the erythropoietin receptor or Stat5, Br. J. Haematol. 2001 Feb;112(2):449-58.

Hennequin C, Thierry A, Richard GF, Lecointre G, Nguyen HV, Gaillardin C, Dujon B, Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains, J. Clin. Microbiol. 2001 Feb;39(2):551-9.

Quintana-Murci L, Fellous M, The Human Y Chromosome: The Biological Role of a “Functional Wasteland”, J. Biomed. Biotechnol. 2001;1(1):18-24.

Cavaillon JM, Adib-Conquy M, Cloëz-Tayarani I, Fitting C, Immunodepression in sepsis and SIRS assessed by ex vivo cytokine production is not a generalized phenomenon: a review, J. Endotoxin Res. 2001;7(2):85-93.

Schwikowski B, Uetz P, Fields S, A network of protein-protein interactions in yeast, Nat. Biotechnol. 2000 Dec;18(12):1257-61.

Brisse S, Dujardin JC, Tibayrenc M, Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers, Mol. Biochem. Parasitol. 2000 Nov;111(1):95-105.

Wolf B, Rey LC, Brisse S, Moreira LB, Milatovic D, Fleer A, Roord JJ, Verhoef J, Molecular epidemiology of penicillin-resistant Streptococcus pneumoniae colonizing children with community-acquired pneumonia and children attending day-care centres in Fortaleza, Brazil, J. Antimicrob. Chemother. 2000 Nov;46(5):757-65.

Brisse S, Milatovic D, Fluit AC, Kusters K, Toelstra A, Verhoef J, Schmitz FJ, Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping, J. Clin. Microbiol. 2000 Oct;38(10):3636-45.

Rocha EP, Danchin A, Viari A, The DB case: pattern matching evidence is not significant, Mol. Microbiol. 2000 Jul;37(1):216-8.

Dujardin JC, Henriksson J, Victoir K, Brisse S, Gamboa D, Arevalo J, Le Ray D, Genomic rearrangements in trypanosomatids: an alternative to the “one gene” evolutionary hypotheses?, Mem. Inst. Oswaldo Cruz 2000 Jul-Aug;95(4):527-34.

Schmitz FJ, Fluit AC, Milatovic D, Verhoef J, Heinz HP, Brisse S, In vitro potency of moxifloxacin, clinafloxacin and sitafloxacin against 248 genetically defined clinical isolates of Staphylococcus aureus, J. Antimicrob. Chemother. 2000 Jul;46(1):109-13.

Rocha EP, Sekowska A, Danchin A, Sulphur islands in the Escherichia coli genome: markers of the cell’s architecture?, FEBS Lett. 2000 Jun;476(1-2):8-11.

Maufrais C, Fazakerley GV, Cadet J, Boulard Y, Solution structure by NMR and molecular dynamics of a duplex containing a guanine opposite a N-(2-deoxy-beta-D-erythro-pentofuranosyl)formamide lesion, Biochemistry 2000 May;39(18):5614-21.

Barnabé C, Brisse S, Tibayrenc M, Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas disease: a multilocus enzyme electrophoresis approach, Parasitology 2000 May;120 ( Pt 5):513-26.

Brisse S, Verduin CM, Milatovic D, Fluit A, Verhoef J, Laevens S, Vandamme P, Tümmler B, Verbrugh HA, van Belkum A, Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping, J. Clin. Microbiol. 2000 May;38(5):1876-84.

Milatovic D, Schmitz FJ, Brisse S, Verhoef J, Fluit AC, In vitro activities of sitafloxacin (DU-6859a) and six other fluoroquinolones against 8,796 clinical bacterial isolates, Antimicrob. Agents Chemother. 2000 Apr;44(4):1102-7.

Rocha EP, Guerdoux-Jamet P, Moszer I, Viari A, Danchin A, Implication of gene distribution in the bacterial chromosome for the bacterial cell factory, J. Biotechnol. 2000 Mar;78(3):209-19.

Brisse S, Milatovic D, Fluit AC, Verhoef J, Schmitz FJ, Epidemiology of quinolone resistance of Klebsiella pneumoniae and Klebsiella oxytoca in Europe, Eur. J. Clin. Microbiol. Infect. Dis. 2000 Jan;19(1):64-8.

Brisse S, Barnabé C, Tibayrenc M, Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis, Int. J. Parasitol. 2000 Jan;30(1):35-44.

Ben-Dor A, Karp R, Schwikowski B, Yakhini Z, Universal DNA tag systems: a combinatorial design scheme, J. Comput. Biol. 2000;7(3-4):503-19.

Blanchette M, Schwikowski B, Tompa M, An exact algorithm to identify motifs in orthologous sequences from multiple species, Proc Int Conf Intell Syst Mol Biol 2000;8:37-45.

Maufrais C, Fazakerley GV, Guy A, Cadet J, Boulard Y, Structure of an oligonucleotide containing a N-(2-deoxy-beta-D-erythro-pentofuranosyl)formamide residue facing a guanine, Biochimie 2000 Jan;82(1):65-9.

Schmitz FJ, Fluit AC, Brisse S, Verhoef J, Köhrer K, Milatovic D, Molecular epidemiology of quinolone resistance and comparative in vitro activities of new quinolones against European Staphylococcus aureus isolates, FEMS Immunol. Med. Microbiol. 1999 Dec;26(3-4):281-7.

Rocha EP, Danchin A, Viari A, Functional and evolutionary roles of long repeats in prokaryotes, Res. Microbiol. 1999 Nov-Dec;150(9-10):725-33.

Richard GF, Hennequin C, Thierry A, Dujon B, Trinucleotide repeats and other microsatellites in yeasts, Res. Microbiol. 1999 Nov-Dec;150(9-10):589-602.

Moszer I, Rocha EP, Danchin A, Codon usage and lateral gene transfer in Bacillus subtilis, Curr. Opin. Microbiol. 1999 Oct;2(5):524-8.

Brisse S, Fluit AC, Wagner U, Heisig P, Milatovic D, Verhoef J, Scheuring S, Köhrer K, Schmitz FJ, Association of alterations in ParC and GyrA proteins with resistance of clinical isolates of Enterococcus faecium to nine different fluoroquinolones, Antimicrob. Agents Chemother. 1999 Oct;43(10):2513-6.

Mandard N, Sy D, Maufrais C, Bonmatin JM, Bulet P, Hetru C, Vovelle F, Androctonin, a novel antimicrobial peptide from scorpion Androctonus australis: solution structure and molecular dynamics simulations in the presence of a lipid monolayer, J. Biomol. Struct. Dyn. 1999 Oct;17(2):367-80.

Rocha EP, Danchin A, Viari A, Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes, Mol. Biol. Evol. 1999 Sep;16(9):1219-30.

Rocha EP, Danchin A, Viari A, Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis, Nucleic Acids Res. 1999 Sep;27(17):3567-76.

Rocha EP, Danchin A, Viari A, Bacterial DNA strand compositional asymmetry: response, Trends Microbiol. 1999 Aug;7(8):308.

Brisse S, Milatovic D, Fluit AC, Verhoef J, Martin N, Scheuring S, Köhrer K, Schmitz FJ, Comparative in vitro activities of ciprofloxacin, clinafloxacin, gatifloxacin, levofloxacin, moxifloxacin, and trovafloxacin against Klebsiella pneumoniae, Klebsiella oxytoca, Enterobacter cloacae, and Enterobacter aerogenes clinical isolates with alterations in GyrA and ParC proteins, Antimicrob. Agents Chemother. 1999 Aug;43(8):2051-5.

Rocha EP, Danchin A, Viari A, Universal replication biases in bacteria, Mol. Microbiol. 1999 Apr;32(1):11-6.

Bañuls AL, Brisse S, Sidibé I, Noël S, Tibayrenc M, A phylogenetic analysis by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting of the Leishmania genome project Friedlin reference strain, Folia Parasitol. 1999;46(1):10-4.

Sarhan H, Cloëz-Tayarani I, Massot O, Fillion MP, Fillion G, 5-HT1B receptors modulate release of [3H]dopamine from rat striatal synaptosomes, Naunyn Schmiedebergs Arch. Pharmacol. 1999 Jan;359(1):40-7.

Massot O, Rousselle JC, Grimaldi B, Cloëz-Tayarani I, Fillion MP, Plantefol M, Bonnin A, Prudhomme N, Fillion G, Molecular, cellular and physiological characteristics of 5-HT-moduline, a novel endogenous modulator of 5-HT1B receptor subtype, Ann. N. Y. Acad. Sci. 1998 Dec;861:174-82.

Fairhead C, Thierry A, Denis F, Eck M, Dujon B, ‘Mass-murder’ of ORFs from three regions of chromosome XI from Saccharomyces cerevisiae, Gene 1998 Nov;223(1-2):33-46.

Cloëz-Tayarani I, Cardona A, Sarhan H, Rousselle JC, Massot O, Edelman L, Fillion G, Mapping of 5-HT-moduline binding sites in guinea-pig brain by film and digital autoradiography, Brain Res. 1998 Jul;798(1-2):311-5.

Rocha EP, Viari A, Danchin A, Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons, Nucleic Acids Res. 1998 Jun;26(12):2971-80.

Brisse S, Barnabé C, Tibayrenc M, Trypanosoma cruzi: How Many Relevant Phylogenetic Subdivisions are There?, Parasitol. Today (Regul. Ed.) 1998 May;14(5):178-9.

Brisse S, Barnabé C, Bañuls AL, Sidibé I, Noël S, Tibayrenc M, A phylogenetic analysis of the Trypanosoma cruzi genome project CL Brener reference strain by multilocus enzyme electrophoresis and multiprimer random amplified polymorphic DNA fingerprinting, Mol. Biochem. Parasitol. 1998 May;92(2):253-63.

Tettelin H, Thierry A, Goffeau A, Dujon B, Physical mapping of chromosomes VII and XV of Saccharomyces cerevisiae at 3.5 kb average resolution to allow their complete sequencing, Yeast 1998 May;14(7):601-16.

Cloëz-Tayarani I, Cardona A, Rousselle JC, Massot O, Edelman L, Fillion G, Autoradiographic characterization of [3H]-5-HT-moduline binding sites in rodent brain and their relationship to 5-HT1B receptors, Proc. Natl. Acad. Sci. U.S.A. 1997 Sep;94(18):9899-904.

Tettelin H, Agostoni Carbone ML, Albermann K, Albers M, Arroyo J, Backes U, Barreiros T, Bertani I, Bjourson AJ, Brückner M, Bruschi CV, Carignani G, Castagnoli L, Cerdan E, Clemente ML, Coblenz A, Coglievina M, Coissac E, Defoor E, Del Bino S, Delius H, Delneri D, de Wergifosse P, Dujon B, Kleine K, The nucleotide sequence of Saccharomyces cerevisiae chromosome VII, Nature 1997 May;387(6632 Suppl):81-4.

Dujon B, Albermann K, Aldea M, Alexandraki D, Ansorge W, Arino J, Benes V, Bohn C, Bolotin-Fukuhara M, Bordonné R, Boyer J, Camasses A, Casamayor A, Casas C, Chéret G, Cziepluch C, Daignan-Fornier B, Dang DV, de Haan M, Delius H, Durand P, Fairhead C, Feldmann H, Gaillon L, Kleine K, The nucleotide sequence of Saccharomyces cerevisiae chromosome XV, Nature 1997 May;387(6632 Suppl):98-102.

Cloëz-Tayarani I, Fillion G, The in situ hybridization and immunocytochemistry techniques for characterization of cells expressing specific mRNAs in paraffin-embedded brains, Brain Res. Brain Res. Protoc. 1997 May;1(2):195-202.

Schwikowski B, Vingron M, The deferred path heuristic for the generalized tree alignment problem, J. Comput. Biol. 1997;4(3):415-31.

Massot O, Rousselle JC, Fillion MP, Grimaldi B, Cloëz-Tayarani I, Fugelli A, Prudhomme N, Seguin L, Rousseau B, Plantefol M, Hen R, Fillion G, 5-hydroxytryptamine-moduline, a new endogenous cerebral peptide, controls the serotonergic activity via its specific interaction with 5-hydroxytryptamine1B/1D receptors, Mol. Pharmacol. 1996 Oct;50(4):752-62.

Cloëz-Tayarani I, Wusher N, Huerre M, Fillion G, Cellular localization of 5-HT1B receptor mRNA in the rat olfactory tubercle: do GABAergic neurons express the 5-HT1B gene?, Brain Res. Mol. Brain Res. 1996 Mar;36(2):337-42.

Bolanos-Jimenez F, Manhaes de Castro RM, Seguin L, Cloez-Tayarani I, Monneret V, Drieu K, Fillion G, Effects of stress on the functional properties of pre- and postsynaptic 5-HT1B receptors in the rat brain, Eur. J. Pharmacol. 1995 Dec;294(2-3):531-40.

Grimaldi B, Cloez-Tayarani I, Fillion MP, Mazie JC, Hen R, Fillion G, Production and characterization of an antibody directed against the mouse 5HT1B receptor, Neurosci. Res. 1995 Dec;24(1):97-101.

Thierry A, Gaillon L, Galibert F, Dujon B, Construction of a complete genomic library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3.7 kb resolution, Yeast 1995 Feb;11(2):121-35.

Dujon B, Alexandraki D, André B, Ansorge W, Baladron V, Ballesta JP, Banrevi A, Bolle PA, Bolotin-Fukuhara M, Bossier P, Bou G, Boyer J, Bultrago MJ, Cheret G, Colleaux L, Dalgnan-Fornler B, del Rey F, Dlon C, Domdey H, Düsterhoft A, Düsterhus S, Entlan KD, Erfle H, Esteban PF, Feldmann H, Fernandes L, Robo GM, Fritz C, Fukuhara H, Gabel C, Gaillon L, Carcia-Cantalejo JM, Garcia-Ramirez JJ, Gent NE, Ghazvini M, Goffeau A, Gonzaléz A, Grothues D, Guerreiro P, Hegemann J, Hewitt N, Hilger F, Hollenberg CP, Horaitis O, Indge KJ, Jacquier A, James CM, Jauniaux C, Jimenez A, Keuchel H, Kirchrath L, Kleine K, Kötter P, Legrain P, Liebl S, Louis EJ, Maia e Silva A, Marck C, Monnier AL, Möstl D, Müller S, Obermaier B, Oliver SG, Pallier C, Pascolo S, Pfeiffer F, Philippsen P, Planta RJ, Pohl FM, Pohl TM, Pöhlmann R, Portetelle D, Purnelle B, Puzos V, Ramezani Rad M, Rasmussen SW, Remacha M, Revuelta JL, Richard GF, Rieger M, Rodrigues-Pousada C, Rose M, Rupp T, Santos MA, Schwager C, Sensen C, Skala J, Soares H, Sor F, Stegemann J, Tettelin H, Thierry A, Tzermia M, Urrestarazu LA, van Dyck L, Van Vliet-Reedijk JC, Valens M, Vandenbo M, Vilela C, Vissers S, von Wettstein D, Voss H, Wiemann S, Xu G, Zimmermann J, Haasemann M, Becker I, Mewes HW, Complete DNA sequence of yeast chromosome XI, Nature 1994 Jun;369(6479):371-8.

Huang ME, Chuat JC, Thierry A, Dujon B, Galibert F, Construction of a cosmid contig and of an EcoRI restriction map of yeast chromosome X, DNA Seq. 1994;4(5):293-300.

Cloëz-Tayarani I, Fillion G, [Fundamental aspects of molecular biology. The multigene family of 5-HT1 receptors], Encephale 1993 May-Jun;19(3):215-9.

Simon-Chazottes D, Cloez-Tayarani I, Fillion MP, Guénet JL, Fillion G, The serotonin 5-HT1B receptor subtype (Htr1b) gene maps to mouse chromosome 9, Mamm. Genome 1993;4(7):397-8.

Pascolo S, Ghazvini M, Boyer J, Colleaux L, Thierry A, Dujon B, The sequence of a 9.3 kb segment located on the left arm of the yeast chromosome XI reveals five open reading frames including the CCE1 gene and putative products related to MYO2 and to the ribosomal protein L10, Yeast 1992 Nov;8(11):987-95.

Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, Alexandraki D, Antoine G, Anwar R, Ballesta JP, Benit P, The complete DNA sequence of yeast chromosome III, Nature 1992 May;357(6373):38-46.

Weydert A, Cloez-Tayarani I, Fillion MP, Simon-Chazottes D, Guenet JL, Fillion G, Molecular cloning of two partial serotonin 5-HT1D receptor sequences in mouse and one in guinea pig, C. R. Acad. Sci. III, Sci. Vie 1992;314(10):429-35.

Cloëz-Tayarani I, Harel-Dupas C, Fillion G, Inhibition of [3H] gamma-aminobutyric acid release from guinea-pig hippocampal synaptosomes by serotonergic agents, Fundam Clin Pharmacol 1992;6(8-9):333-41.

Harel-Dupas C, Cloëz I, Fillion G, , Antagonism by antidepressant drugs of the inhibitory effect of trifluoromethylphenylpiperazine (TFMPP) on [3H]acetylcholine release in rat or guinea-pig hippocampal synaptosomes., Eur Neuropsychopharmacol 1991 May; 1(2): 157-64.

Harel-Dupas C, Cloëz I, Fillion G, , The inhibitory effect of trifluoromethylphenylpiperazine on [3H]acetylcholine release in guinea pig hippocampal synaptosomes is mediated by a 5-hydroxytryptamine1 receptor distinct from 1A, 1B, and 1C subtypes., J Neurochem 1991 Jan; 56(1): 221-7.

Fillion G, Barone P, Cloëz I, Fillion MP, Harel C, Massot O, Rousselle JC, Zifa E, , A cerebral endogenous factor regulates the activity of the serotonergic receptors modulating the neuronal release of acetylcholine., Adv Exp Med Biol 1991 ; 287(): 165-76.

Tayarani I, Cloëz I, Lefauconnier JM, Bourre JM, , Sodium-dependent high-affinity uptake of taurine by isolated rat brain capillaries., Biochim Biophys Acta 1989 Oct; 985(2): 168-72.

Tayarani I, Cloëz I, Clément M, Bourre JM, , Antioxidant enzymes and related trace elements in aging brain capillaries and choroid plexus., J Neurochem 1989 Sep; 53(3): 817-24.

Cloëz I, Tayarani I, Morel F, Bourre JM, , Alterations in protective enzymes against peroxidation in the central and peripheral nervous system of control and dysmyelinating mutant mice., J Neurochem 1989 May; 52(5): 1353-8.

Cloëz I, Bourre JM, , Copper, manganese and zinc in the developing brain of control and quaking mice., Neurosci Lett 1987 Dec; 83(1-2): 118-22.

Cloëz I, Dumont O, Piciotti M, Bourre JM, , Alterations of lipid synthesis in the normal and dysmyelinating trembler mouse sciatic nerve by heavy metals (Hg, Pb, Mn, Cu, Ni)., Toxicology 1987 Oct; 46(1): 65-71.

Bourre JM, Cloez I, Galliot M, Buisine A, Dumont O, Piciotti M, Prouillet F, Bourdon R, , Occurrence of manganese, copper and zinc in myelin. Alterations in the peripheral nervous system of dysmyelinating trembler mutant are at variance with brain mutants (quaking and shiverer)., Neurochem Int 1987 ; 10(3): 281-6.

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Luine VN, McEwen BS, Black IB, , Effect of 17 beta-estradiol on hypothalamic tyrosine hydroxylase activity., Brain Res. 1977 Jan; 120(1): 188-92.

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Jovanic T, Winding M, Cardona A, Truman JW, Gershow M, Zlatic M, , Neural Substrates of Drosophila Larval Anemotaxis., Curr Biol 2019 02; 29(4): 554-566.e4.