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Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
Hub de Bioinformatique et Biostatistique
Hub d’Analyse d’Images
Groupe d’expertise : SysBio – Bio-informatique des Systèmes
INCEPTION – INstitut Convergences pour l’étude de l’Émergence des Pathologies au Travers des Individus et des populatiONs
Centre de Ressources et Recherche en Informatique
Emmanuelle Permal
Emeline Perthame
Jean-Yves Tinevez
Blaise Li
Sébastien MELLA
Anđela Davidović
Pascal Campagne
Thomas Obadia
Elise Jacquemet
Hanna Julienne
Thomas Bigot
Frédéric LEMOINE
Nicolas Maillet
Claudia Chica
Julien Guglielmini
Vincent Guillemot
Bernd Jagla
Vincent Laville
Benoît Lelandais
Gaëlle Letort
Yann Loe-Mie
Hélène Lopez-Maestre
Marion Louveaux
Olivier Mirabeau
Damien Mornico
Adrien Pain
Natalia Pietrosemoli
Stéphane Rigaud
Hugo Varet
Amaury Vaysse
Minh-Son Phan
Marvin Albert
2022-10-21 09:30:00
2023-06-30 18:00:00
Europe/Paris
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
25-28 Rue du Docteur Roux, Paris, France
Introduction to R and statistics – RS1
virtual session (on Teams) in French. The course material for this module is available on-line permanently and is hopefully detailed enough to be studied in a self-learning mode: https://hub-courses.pages.pasteur.fr/R_pasteur_phd/First_steps_RStudio.html Part of PhD course R […]
2021-11-02 09:00:00
2021-11-05 00:30:00
Europe/Paris
Introduction to R and statistics – RS1
virtual session (on Teams) in French. The course material for this module is available on-line permanently and is hopefully detailed enough to be studied in a self-learning mode: https://hub-courses.pages.pasteur.fr/R_pasteur_phd/First_steps_RStudio.html Part of PhD course R […]
Introduction to R and statistics – RS1
Part of the PhD course “R and statistics”. The course material for this module is available on-line permanently and is hopefully detailed enough to be studied in a self-learning mode: https://hub-courses.pages.pasteur.fr/R_pasteur_phd/First_steps_RStudio.html More info on […]
2022-04-04 09:30:00
2022-04-06 17:00:00
Europe/Paris
Introduction to R and statistics – RS1
Part of the PhD course “R and statistics”. The course material for this module is available on-line permanently and is hopefully detailed enough to be studied in a self-learning mode: https://hub-courses.pages.pasteur.fr/R_pasteur_phd/First_steps_RStudio.html More info on […]
Institut Pasteur, Rue du Docteur Roux, Paris, France
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
Hub d’Analyse d’Images
Hub de Bioinformatique et Biostatistique
INCEPTION – INstitut Convergences pour l’étude de l’Émergence des Pathologies au Travers des Individus et des populatiONs
Biologie Computationnelle
Centre de Ressources et Recherches Technologiques
Vincent Guillemot
Christophe Malabat
Jean-Yves Tinevez
Marie-Agnès Dillies
Frédéric LEMOINE
Nicolas Maillet
Blaise Li
Stevenn Volant
Pascal Campagne
Hugo Varet
Hanna Julienne
Julien Guglielmini
Thomas Bigot
Quentin Giai Gianetto
Claudia Chica
Rachel Legendre
Adrien Pain
Natalia Pietrosemoli
Emeline Perthame
Stéphane Rigaud
Benoît Lelandais
Dmitry Ershov
Sébastien MELLA
Anđela Davidović
Thomas Obadia
Véronique Hourdel
Amine Ghozlane
Alexis Criscuolo
Amaury Vaysse
2020-10-15 09:30:00
2021-06-03 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
25-28 Rue du Dr Roux, 75015 Paris, France
Software Carpentry
Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including […]
2018-03-28 09:00:00
2018-03-29 17:00:00
Europe/Paris
Software Carpentry
Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including […]
Pasteur, Paris, France
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
2017-01-16 09:00:00
2017-02-17 13:00:00
Europe/Paris
Introduction to data analysis
This five weeks graduate level course will give participants basic skills and hands-on training in biostatistics. It will cover all the steps of an analysis workflow : design, collection, curation, hypothesis testing and data […]
28 Rue du Docteur Roux, Paris, France
Projets
Logiciel
Anciennes Équipes
CV
- 2016 – present: Ingénieur de recherche, Institut Pasteur (Paris)
- 2013 – 2016: Ingénieur de recherche, Institut de Génétique Humaine (CNRS, Montpellier)
- 2011 – 2013: Bolsista de pós-doutorado, Centro de Ciências do Mar (Universidade do Algarve, Portugal)
- 2009 – 2011: Assegnista di ricerca, Dipartimento di Fisica (Politecnico di Torino, Italie)
- 2007 – 2008: Middle-school biology teacher (Issy-les-Moulineaux)
- 2004 – 2007: Allocataire de recherche (Université Paris VI) Moniteur (Université Versailles – St-Quentin)
- 2000 – 2004: Civil-servant student, ENS (Paris)
Publications
Télécharger-
2023Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage., Proc Natl Acad Sci U S A 2023 Mar; 120(10): e2220828120.
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2022piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development., Dev Cell 2022 Jan; 57(2): 180-196.e7.
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2021Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis., Nat Commun 2021 06; 12(1): 3492.
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2021Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos., Nat Commun 2021 03; 12(1): 1441.
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2020Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants., Nat Cell Biol 2020 02; 22(2): 235-245.
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2018The somatic piRNA pathway controls germline transposition over generations, Nucleic Acids Research, gky761, https://doi.org/10.1093/nar/gky761.
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2017Piwi Is Required during Drosophila Embryogenesis to License Dual-Strand piRNA Clusters for Transposon Repression in Adult Ovaries, Mol. Cell 2017 May;66(3):411-419.e4.
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2016microRNA target prediction programs predict many false positives, Genome Res. 2017 Feb;27(2):234-245.
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2015MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells, PLoS Genet. 2015 May;11(5):e1005194.
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2014Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins, Mol. Biol. Evol. 2014 Jul;31(7):1697-709.
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