Timeline

Blaise Li

Research Engineer

06 Jan 2025

publication

Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification.

05 Jun 2024

publication

Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated to queuosine tRNA modification

04 Jun 2024

publication

Genomic and epidemiological evidence for the emergence of a L. infantum/L. donovani hybrid with unusual epidemiology in northern Italy.

01 Sep 2023

publication

BioConvert: a comprehensive format converter for life sciences

17 Jul 2023

course

Bioinformatics program for PhD students 2023 2024

07 Mar 2023

publication

Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage.

11 Jul 2022

course

Bioinformatics program for PhD students 2022-2023

30 Mar 2022

course

Introduction to R and statistics – RS1

30 Mar 2022

course

Introduction to R and statistics – RS1

01 Feb 2022

project

Phenotypic adaptation to antibiotics: t/rRNA modifications

24 Jan 2022

publication

piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development.

09 Jun 2021

publication

Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis.

04 Mar 2021

publication

Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos.

24 Sep 2020

course

Bioinformatics program for PhD students 2020-2021

01 Feb 2020

publication

Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants.

05 Sep 2018

course

Software Carpentry

24 Aug 2018

publication

The somatic piRNA pathway controls germline transposition over generations

19 Jul 2018

course

Introduction to data analysis

19 Jul 2018

project

Bioconvert

05 Jul 2018

software

Quality-aware fastq demultiplexer (qaf_demux)

28 Mar 2018

team

Expertise group: GORE – Genome Organization Regulation and Expression

28 Mar 2018

team

Expertise group : ALPS – Algorithmics and programming in science

27 Apr 2017

publication

Piwi Is Required during Drosophila Embryogenesis to License Dual-Strand piRNA Clusters for Transposon Repression in Adult Ovaries

15 Nov 2016

publication

microRNA target prediction programs predict many false positives

17 Sep 2015

project

ERC-2015-StG RNAEPIGEN – Mechanisms of epigenetic inheritance by short RNAs

26 Jun 2015

team

Bioinformatics and Biostatistics HUB

19 May 2015

publication

MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells

02 May 2014

publication

Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins

26 Mar 2014

publication

Unravelling the distinct strains of Tharu ancestry

06 Jan 2014

publication

Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions

12 Sep 2013

publication

Evaluating strategies of phylogenetic analyses by the coherence of their results

02 Oct 2009

publication

rely.py, a python script to detect reliable clades

18 Jun 2009

publication

SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences

19 May 2009

publication

Agnathan brain anatomy and craniate phylogeny

27 Nov 2008

publication

RNF213, a new nuclear marker for acanthomorph phylogeny

25 Sep 2008

publication

Formalizing reliability in the taxonomic congruence approach

20 Jul 2006

publication

Systematic relationships of the bushy‐tailed and black‐footed mongooses (genus Bdeogale, Herpestidae, Carnivora) based on molecular, chromosomal and morphological evidence

A little guide for advanced search:

Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification.

Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated to queuosine tRNA modification

Genomic and epidemiological evidence for the emergence of a L. infantum/L. donovani hybrid with unusual epidemiology in northern Italy.

BioConvert: a comprehensive format converter for life sciences

Bioinformatics program for PhD students 2023 2024

Leishmania allelic selection during experimental sand fly infection correlates with mutational signatures of oxidative DNA damage.

Bioinformatics program for PhD students 2022-2023

Introduction to R and statistics – RS1

Introduction to R and statistics – RS1

Phenotypic adaptation to antibiotics: t/rRNA modifications

piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development.

Translation and codon usage regulate Argonaute slicer activity to trigger small RNA biogenesis.

Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos.

Bioinformatics program for PhD students 2020-2021

Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants.

Software Carpentry

The somatic piRNA pathway controls germline transposition over generations

Introduction to data analysis

Bioconvert

Quality-aware fastq demultiplexer (qaf_demux)

Expertise group: GORE – Genome Organization Regulation and Expression

Expertise group : ALPS – Algorithmics and programming in science

Piwi Is Required during Drosophila Embryogenesis to License Dual-Strand piRNA Clusters for Transposon Repression in Adult Ovaries

microRNA target prediction programs predict many false positives

ERC-2015-StG RNAEPIGEN – Mechanisms of epigenetic inheritance by short RNAs

Bioinformatics and Biostatistics HUB

MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells

Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins

Unravelling the distinct strains of Tharu ancestry

Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions

Evaluating strategies of phylogenetic analyses by the coherence of their results

rely.py, a python script to detect reliable clades

SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences

Agnathan brain anatomy and craniate phylogeny

RNF213, a new nuclear marker for acanthomorph phylogeny

Formalizing reliability in the taxonomic congruence approach

Systematic relationships of the bushy‐tailed and black‐footed mongooses (genus Bdeogale, Herpestidae, Carnivora) based on molecular, chromosomal and morphological evidence