checkMyIndex is an application whose goal is to help in finding a set of compatible indexes for a sequencing experiment. It has been developped using the R/Shiny environment and is freely available at https://checkmyindex.pasteur.fr/.
Shortly, the user must provide a list of its available indexes in input and the algorithm will return a solution according to the parameters specified:
- total number of samples to be sequences
- multiplexing rate (number of samples per lane)
- constraint on the indexes (e.g. use each index only once)
- minimum number of red/green ligths required at each position