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About

IMPORTANT: The Biomics platform prioritizes Covid-19 project. 

Biomics prioritizes Covid-19 / SARS-COV-2 research projects. IIt is important to note that we are starting to accept all other types of projects again.

Our prioritization of activity during this period is as follows:

  1. Treatment of Covid-19 priority projects (Pasteur CIBU, CNR…)
  2. Treatment of all other projects submitted to Biomics
  3. Maintaining our sequencing capacity (5 sequencers in autonomous access)
    • Priority to Covid-19 projects
    • Only accessible to campus users

Measures carried out to facilitate the return of activity

It is foreseeable that, following this crisis, Covid projects will remain a priority in the medium term, which will have an impact on Biomics’ capacity to handle other types of projects.

To anticipate this, we have set up user autonomy aids for the sequencing of “classic Illumina” projects: Genomics (DNA-Seq), Transcriptomics (RNA-Seq) and Metagenomics. Certain provisions are reserved for Pasteurian users (IP and RIIP). Of course, we will continue to take charge of complex projects requiring fine-tuning.

  • Preparation of sequence libraries
    • List of essential laboratory equipment (on demand)
    • Provision of simplified protocols (on demand, IP and RIIP)
  • Simplifying access to the autonomous use of our machines room 14.01.06
    • Creation and update of Moocs (http://moocs.pasteur.fr)
      • Quality: BioAnalyzer (Fr, En); Fragmentation:Covaris (ends of 2020)
      • Sequencer: NextSeq (Fr, En); ISeq100 (ends of 2020), MiniSeq (ends of 2020)
    • Automation of the sending of data generated by our sequencers
  • Possibility to outsource libraries on a NovaSeq via PPMS (IP and RIIP)

####

 

The Biomics Core Facility  is the C2RT structure at Institut Pasteur for Next Generation Sequencing and includes both short and long-read technologies.

Our mission is to facilitate scientific discovery within Pasteur Institute’s network and academic research institutes. Biomics accepts both service and collaborative projects and works closely with the C3BI and DSI to provide data analysis solutions and data storage for researchers. Please contact us for pricing and turnaround times.

Our website, https://biomics.pasteur.fr, allows you to:

  • Ask questions (price, delay time, grants…)
  • Submit a new project
  • Monitor the progress of your project
  • Information on the services provided

Here are some examples of what we propose (Procaryotes, Eukaryotes and Viruses):

  1. Technology: Short-Reads (Illumina), Long-Reads (PacBio & Nanopore)
  2. DNA-Seq: Sequencing de novo and targeted
  3. RNA-Seq: Transcriptomic Analysis
  4. Metagenomic: Targeted sequencing studies (16S, 18S, ITS) or random (Shotgun)
  5. Genotyping (autonomous access)
  6. Bioinformatics: NGS data analysis (Variant, Assembly, Methylation study…)

Biomics and its staff of experts work hard for the successful and timely processing of all samples and requests. If you are unsatisfied with our service or have a suggestion on how we can improve please do not hesitate to contact us: Reclamation / Suggestions

Equipments

Booking site

NextSeq500 • Illumina • NextSeq500

The NextSeq 550 System brings the power of a high throughput sequencing system to your benchtop. With tunable output and high data quality, it provides the flexible power you need for whole-genome, transcriptome, and […]

Bioanalyzer 2100 • •

Bioanalyzer 2100 is dedicated to the microfluidic  electrophoresis of nucleic acids (DNA, RNA). Depositing the samples is done on specific chips depending on the type of sample. Electrophoresis is fast and provided quantitative and […]

Software

Courses

Scientific Programming in Python

The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]

2017-03-06 09:30:00 2017-03-18 17:00:00 Europe/Paris Scientific Programming in Python The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […] 25 Rue du Dr Roux, 75015 Paris, France

A new SPOC

A new SPOC (Small Private Online Course) “Training for the use of a Bioanalyzer chip: Preparation of a RNA Nano chip” is now offered to Pasteurs Users and Orex. More informations here. See you […]

2017-10-19 00:00:00 2017-10-19 00:00:00 Europe/Paris A new SPOC A new SPOC (Small Private Online Course) “Training for the use of a Bioanalyzer chip: Preparation of a RNA Nano chip” is now offered to Pasteurs Users and Orex. More informations here. See you […] 28 Rue du Docteur Roux, Paris, France

Workshop: Bacterial RNAseq

We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […]

2016-06-06 09:00:00 2016-06-10 17:00:00 Europe/Paris Workshop: Bacterial RNAseq We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […] 28 Rue du Docteur Roux, Paris, France

Training: analysis of the transcriptome by RNAseq

The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […]

2016-10-10 09:00:00 2016-10-14 17:00:00 Europe/Paris Training: analysis of the transcriptome by RNAseq The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […] 28 Rue du Docteur Roux, Paris, France

Projects

Transversal Project

Tools

Fundings

Publications

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