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About

IMPORTANT: The Biomics platform is focused on Covid-19 research. 

Biomics is currently focused on Covid-19 / SARS-COV-2 research projects. It is important to note that we continue to accept projects related to the pandemic, all other applications will automatically be declined.

For projects that have already been submitted, it is possible, if you can, to send us your samples. Please let us know so that we can retrieve and store them.

Our prioritization of activity during this period is as follows:

  1. Treatment of Covid-19 or priority projects (Pastor CIBU, CNR…)
  2. Maintaining our sequencing capacity (5 sequencers in autonomous access)
    • Priority to Covid-19 projects
    • Only accessible to campus users

Measures to prepare for the return of activity

The teleworking team will put in place measures to prepare for the return to normal. Indeed, it is foreseeable that following this crisis, Biomics’ capacity to take on new projects will be limited, for a more or less long period of time. It is also likely that the Biomics members most in demand will benefit from a recovery period, but also that certain projects will remain a priority in the medium term.

To anticipate, we are going to set up user autonomy support for the sequencing of “classic Illumina” projects: Genomics (DNA-Seq), Transcriptomics (RNA-Seq) and Metagenomics. Certain provisions are reserved for Pasteurian users (IP and RIIP). Of course, we will continue to handle complex projects requiring fine-tuning.

  • Preparation of sequence libraries
    • List of essential laboratory equipment
    • Provision of simplified protocols (IP and RIIP)
    • Creation of a forum for mutual help and sharing (IP and RIIP)
  • Simplifying access to the autonomous use of our machines room 14.01.06
    • Creation and update of Moocs in French and English
      • Sequencer (ISeq100, MiniSeq, NextSeq)
      • Quality (BioAnalyzer) and Fragmentation (Covaris)
    • Automation of the sending of data generated by our sequencers
  • Possibility to outsource libraries on a NovaSeq via PPMS (IP and RIIP)

These moocs type courses are available at the address below. Don’t hesitate to take a training course, some of them, such as the one for the BioAnalyzer and the NextSeq500, are already available J

https://moocs.pasteur.fr

 

The Biomics Platform is the C2RT structure at Institut Pasteur for Next Generation Sequencing and includes both short and long-read technologies.

Our mission is to facilitate scientific discovery within Pasteur Institute’s network and academic research institutes. Biomics accepts both service and collaborative projects and works closely with the C3BI and DSI to provide data analysis solutions and data storage for researchers. Please contact us for pricing and turnaround times.

Our website, https://biomics.pasteur.fr, allows you to:

  • Ask questions (price, delay time, grants…)
  • Submit a new project
  • Monitor the progress of your project
  • Information on the services provided

Here are some examples of what we propose (Procaryotes, Eukaryotes and Viruses):

  1. Technology: Short-Reads (Illumina), Long-Reads (PacBio & Nanopore)
  2. DNA-Seq: Sequencing de novo and targeted
  3. RNA-Seq: Transcriptomic Analysis
  4. Metagenomic: Targeted sequencing studies (16S, 18S, ITS) or random (Shotgun)
  5. Bioinformatics: NGS data analysis (Variant, Assembly, Methylation study…)

Biomics and its staff of experts work hard for the successful and timely processing of all samples and requests. If you are unsatisfied with our service or have a suggestion on how we can improve please do not hesitate to contact us: Reclamation / Suggestions

Services Booking site

Training on the Agilent Bioanalyzer

A SPOC for using the Agilent Bioanalyzer Training sessions for the use of the Bioanalyzer, organized at the Biomics Platform, are now replaced by a SPOC, available 24 hours a day on-line via the […]

Pushing the Limit: A Complete Solution for Generating Stranded RNA-Seq Libraries from Picogram Inputs of Total Mammalian RNA

With challenging samples, like RNA isolated using laser capture microscopy, it is difficult to obtain 10 ng of starting material; additionally, rRNA depletion leads to sample loss, undermining robust library preparation. The new release surpasses […]

Index compatibility for sequencing

Illumina uses a green laser to sequence G/T and a red laser to sequence A/C. At each cycle at least one of two nucleotides for each color channel need to be read to ensure […]

Equipments Booking site

NextSeq500 • Illumina • NextSeq500

The NextSeq 550 System brings the power of a high throughput sequencing system to your benchtop. With tunable output and high data quality, it provides the flexible power you need for whole-genome, transcriptome, and […]

BioAnalyzer • Agilent • Bioanalyzer 2100

Our Bioanalyzer 2100 is dedicated to the microfluidic  electrophoresis of nucleic acids (DNA, RNA). Depositing the samples is done on specific chips depending on the type of sample. Electrophoresis is fast and provided quantitative […]

Software

Former Members

2000
2000
Name
Position
2015
2020
Célia Palcy
Technician
2015
2020
Magali Tichit
Technician
2015
2020
Lucile Broseus
Undergraduate Student
2015
2020
Bernd Jagla
Research Engineer
2015
2020
Béatrice Regnault
Head of Structure
2015
2020
Nathalie Nadeau
2015
2020
Christine Detchepare
Administrative Staff
2015
2020
Dimitri Desvillechabrol
Research Engineer
2015
2020
Marie-Agnès Dillies
Head of Structure
2015
2020
Christophe D’Enfert
Head of Structure
2015
2020
Christiane Bouchier
Permanent Researcher
2015
2020
Caroline Proux
Research Engineer
2015
2020
Amine Ghozlane
Research Engineer
2015
2020
Sean Kennedy
Permanent Researcher
2015
2020
Sophie Dia
Administrative Staff
2015
2020
Jean-Yves Coppee
Permanent Researcher
2015
2020
Saliha Azebi
Research Engineer
2015
2020
Cédric Fund
Technician
2015
2020
Rachel Legendre
Research Engineer
2015
2020
Odile Sismeiro
Research Engineer
2015
2020
Catherine Dauga
Permanent Researcher
2015
2020
Sophia Achaibou
Undergraduate Student
2015
2020
Hugo Varet
Research Engineer

Courses

Scientific Programming in Python

The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […]

2017-03-06 09:30:00 2017-03-18 17:00:00 Europe/Paris Scientific Programming in Python The ever growing usage of high throughput technologies in Biology is revolutionizing the life sciences and profoundly changing its practices. Scripting languages are used on a daily basis in life science labs in order […] 25 Rue du Dr Roux, 75015 Paris, France

A new SPOC

A new SPOC (Small Private Online Course) “Training for the use of a Bioanalyzer chip: Preparation of a RNA Nano chip” is now offered to Pasteurs Users and Orex. More informations here. See you […]

2017-10-19 00:00:00 2017-10-19 00:00:00 Europe/Paris A new SPOC A new SPOC (Small Private Online Course) “Training for the use of a Bioanalyzer chip: Preparation of a RNA Nano chip” is now offered to Pasteurs Users and Orex. More informations here. See you […] 28 Rue du Docteur Roux, Paris, France

Workshop: Bacterial RNAseq

We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […]

2016-06-06 09:00:00 2016-06-10 17:00:00 Europe/Paris Workshop: Bacterial RNAseq We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […] 28 Rue du Docteur Roux, Paris, France

Training: analysis of the transcriptome by RNAseq

The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […]

2016-10-10 09:00:00 2016-10-14 17:00:00 Europe/Paris Training: analysis of the transcriptome by RNAseq The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […] 28 Rue du Docteur Roux, Paris, France

Projects

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