GUIDE
- Left-click and drag the background to move the graph
- Left-click and drag the nodes to reorganize
- Left-click a node to view first level connections
- Double left-click a node to navigate to its page
- Double left-click the background to zoom in
- Right-click the background to zoom out
sigma.utils.pkg('sigma.canvas.nodes');
sigma.canvas.nodes.image = (function() {
var _cache = {},
_loading = {},
_callbacks = {};
// Return the renderer itself:
var renderer = function(node, context, settings) {
var args = arguments,
prefix = settings('prefix') || '',
size = node[prefix + 'size'],
color = node.color || settings('defaultNodeColor'),
url = node.url;
if (_cache[url]) {
context.save();
// Draw the clipping disc:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.closePath();
context.clip();
// Draw the image
context.drawImage(
_cache[url],
node[prefix + 'x'] - size,
node[prefix + 'y'] - size,
2 * size,
2 * size
);
// Quit the "clipping mode":
context.restore();
// Draw the border:
context.beginPath();
context.arc(
node[prefix + 'x'],
node[prefix + 'y'],
node[prefix + 'size'],
0,
Math.PI * 2,
true
);
context.lineWidth = 1;
context.strokeStyle = node.color || settings('defaultNodeColor');
context.stroke();
} else {
sigma.canvas.nodes.image.cache(url);
sigma.canvas.nodes.def.apply(
sigma.canvas.nodes,
args
);
}
};
// Let's add a public method to cache images, to make it possible to
// preload images before the initial rendering:
renderer.cache = function(url, callback) {
if (callback)
_callbacks[url] = callback;
if (_loading[url])
return;
var img = new Image();
img.onload = function() {
_loading[url] = false;
_cache[url] = img;
if (_callbacks[url]) {
_callbacks[url].call(this, img);
delete _callbacks[url];
}
};
_loading[url] = true;
img.src = url;
};
return renderer;
})();
var i,
s,
o,
offset_left = 0.5,
N = 1,
E = 40,
C = 5,
d = 0.5,
cs = [],
g = {
nodes: [],
edges: []
};
if (!sigma.classes.graph.hasMethod('neighbors')){
sigma.classes.graph.addMethod('neighbors', function(nodeId) {
var k,
neighbors = {},
index = this.allNeighborsIndex[nodeId] || {};
for (k in index)
neighbors[k] = this.nodesIndex[k];
return neighbors;
});
}
//adding the central node
g.nodes.push({
id: 137237,
label: 'Emmanuelle Permal',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/02/research_pasteur-pasteur2-150x150.jpg',
x: 0,
y: 0,
size: 30,
color: '#DDDDDD'
});
var biggest_node_size = 0;
N=7
// adding node
var x_node = Math.cos(2 * 0 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 0 * Math.PI / N) * 10;
g.nodes.push({
id: 164454,
label: 'COURSE: Bioinformatics program for PhD students 2021-2022',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/course/bioinformatics-program-for-phd-students-2021-2022/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 137237164454,
size: 0.5,
source: 137237,
target: 164454,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 906,
label: 'Marie-Agnès Dillies',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-photomadillies2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/marie-agnes-dillies/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 164454906,
size: 0.5,
source: 164454,
target: 906 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 1581,
label: 'Jean-Yves Tinevez',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/02/JYT-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/jean-yves-tinevez/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1644541581,
size: 0.5,
source: 164454,
target: 1581 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 80011,
label: 'Vincent Guillemot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_vincent-guillemot-1-e1479989507346-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/vincent-guillemot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 16445480011,
size: 0.5,
source: 164454,
target: 80011 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 164454137237,
size: 0.5,
source: 164454,
target: 137237 });
// adding node
var x_node = Math.cos(2 * 1 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 1 * Math.PI / N) * 10;
g.nodes.push({
id: 138835,
label: 'PROJECT: Cytoplasmic mRNA degradation pathways',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/cytoplasmic-mrna-degradation-pathways/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 137237138835,
size: 0.5,
source: 137237,
target: 138835,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 117049,
label: 'Estelle Dacheux',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/11/research_pasteur-photo-pro_dacheux-estelle-5-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/estelle-dacheux/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 138835117049,
size: 0.5,
source: 138835,
target: 117049 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 138835137237,
size: 0.5,
source: 138835,
target: 137237 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4416,
label: 'Abdelkader Namane',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research.pasteur.fr_photo-an1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/abdelkader-namane/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1388354416,
size: 0.5,
source: 138835,
target: 4416 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6985,
label: 'Maïté Gomard',
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/member/maite-gomard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1388356985,
size: 0.5,
source: 138835,
target: 6985 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4407,
label: 'Micheline Fromont-Racine',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_photos_mfr-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/micheline-fromont-racine/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1388354407,
size: 0.5,
source: 138835,
target: 4407 });
// adding node
var x_node = Math.cos(2 * 2 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 2 * Math.PI / N) * 10;
g.nodes.push({
id: 138636,
label: 'PROJECT: Translation and Ribosome rescue',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/project/translation-and-ribosome-rescue/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 137237138636,
size: 0.5,
source: 137237,
target: 138636,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 117049) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 138636117049,
size: 0.5,
source: 138636,
target: 117049 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4416) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1386364416,
size: 0.5,
source: 138636,
target: 4416 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4406,
label: 'Gwenaël Badis-Breard',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_badis-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gwenael-badis-breard/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1386364406,
size: 0.5,
source: 138636,
target: 4406 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7760,
label: 'Varun Khanna',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_varunkhanna-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/varun-khanna/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1386367760,
size: 0.5,
source: 138636,
target: 7760 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4408,
label: 'Alain Jacquier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_identite-alain-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/alain-jacquier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1386364408,
size: 0.5,
source: 138636,
target: 4408 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 138636137237,
size: 0.5,
source: 138636,
target: 137237 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4407) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 1386364407,
size: 0.5,
source: 138636,
target: 4407 });
// adding node
var x_node = Math.cos(2 * 3 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 3 * Math.PI / N) * 10;
g.nodes.push({
id: 137978,
label: 'TEAM: Expertise group: Genomics',
x: x_node,
y: y_node,
type: 'image',
url: '',
page_url: 'https://research.pasteur.fr/en/team/hub-geno/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 137237137978,
size: 0.5,
source: 137237,
target: 137978,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 6822,
label: 'Corinne Maufrais',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_fig36-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/corinne-maufrais/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1379786822,
size: 0.5,
source: 137978,
target: 6822 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 101015,
label: 'Amaury Vaysse',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-photo_av-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/amaury-vaysse/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 137978101015,
size: 0.5,
source: 137978,
target: 101015 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 137978137237,
size: 0.5,
source: 137978,
target: 137237 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 79863,
label: 'Gaël Millot',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_gael-portrait-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/gael-millot/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 13797879863,
size: 0.5,
source: 137978,
target: 79863 });
// adding node
var x_node = Math.cos(2 * 4 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 4 * Math.PI / N) * 10;
g.nodes.push({
id: 24220,
label: 'TEAM: Quality Control at the Ribosome',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_molecular-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/group-micheline-fromont-racine/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 13723724220,
size: 0.5,
source: 137237,
target: 24220,
});
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4416) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 242204416,
size: 0.5,
source: 24220,
target: 4416 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 117049) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 24220117049,
size: 0.5,
source: 24220,
target: 117049 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 24220137237,
size: 0.5,
source: 24220,
target: 137237 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6985) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 242206985,
size: 0.5,
source: 24220,
target: 6985 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4407) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 242204407,
size: 0.5,
source: 24220,
target: 4407 });
// adding node
var x_node = Math.cos(2 * 5 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 5 * Math.PI / N) * 10;
g.nodes.push({
id: 18489,
label: 'TEAM: Bioinformatics and Biostatistics HUB',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_complex-system-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 13723718489,
size: 0.5,
source: 137237,
target: 18489,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 152507,
label: 'Victoire Baillet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/01/research_pasteur-victoire-baillet-foo2-150x150.jpg',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research_pasteur-thomas-bigot-pour-profil2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/thomas-bigot/',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-me-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/bryan-brancotte/',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/05/research.pasteur.fr_pic-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/giovanni-bussotti/',
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// adding site
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url: 'https://research.pasteur.fr/wp-content/uploads/2018/07/research_pasteur-img_0911-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/pascal-campagne/',
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// adding site
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// adding site
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// adding site
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url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-portrait-1-150x150.png',
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// adding site
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page_url: 'https://research.pasteur.fr/en/member/alexis-criscuolo/',
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// adding site
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url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-692293-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/andela-davidovic/',
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y: y_site,
size: 10,
color: '#dddddd'
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// adding site
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label: 'Stéphane Descorps-Declère',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/05/research_pasteur-img_20170804_170423_hdr-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/stephane-descorps-declere/',
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// adding site
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label: 'Dimitri Desvillechabrol',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/08/research_pasteur-dimitri_brmlab-150x150.png',
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// adding site
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label: 'Johann Dreo',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2021/04/research_pasteur-johann-dreo-portrait-150x150.jpeg',
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// adding site
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label: 'Yoann Dufresne',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/03/research_pasteur-profile-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/yoann-dufresne/',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/09/research_pasteur-potrait_pasteur-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/slim-el-khiari/',
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// adding site
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label: 'Julien Fumey',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/06/research_pasteur-fumey-julien-10-e1528383655738-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/julien-fumey/',
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// adding site
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label: 'Amine Ghozlane',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/06/research_pasteur-20200223_122542-1-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/amine-ghozlane/',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_p10001292_3-150x150.jpg',
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// adding site
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type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/09/research_pasteur-julien-guglielmini-last-150x150.jpg',
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// adding site
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label: 'Elise Jacquemet',
type: 'image',
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// adding site
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label: 'Bernd Jagla',
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// adding site
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// adding site
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// adding site
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target: 138400 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 104985,
label: 'Violaine Saint-André',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2018/04/research_pasteur-portraitcoupe-1-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/violaine-saint-andre/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 18489104985,
size: 0.5,
source: 18489,
target: 104985 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 90107,
label: 'Najwa Taib',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/05/research_pasteur-photo_ntaib-150x150.jpeg',
page_url: 'https://research.pasteur.fr/en/member/najwa-taib/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1848990107,
size: 0.5,
source: 18489,
target: 90107 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7763,
label: 'Rachel Torchet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2016/11/research.pasteur.fr_rachelgrandintorchet-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/rachel-torchet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 184897763,
size: 0.5,
source: 18489,
target: 7763 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 2237,
label: 'Hugo Varet',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/03/IMG_5255-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/hugo-varet/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 184892237,
size: 0.5,
source: 18489,
target: 2237 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 101015) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18489101015,
size: 0.5,
source: 18489,
target: 101015 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 7762,
label: 'Stevenn Volant',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_stevennvolant-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/stevenn-volant/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 184897762,
size: 0.5,
source: 18489,
target: 7762 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 57911,
label: 'Anna Zhukova',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/11/research_pasteur-anna-zhukova-anna3-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/anna-zhukova/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 1848957911,
size: 0.5,
source: 18489,
target: 57911 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 906) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 18489906,
size: 0.5,
source: 18489,
target: 906 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4415,
label: 'Christophe Malabat',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_img_08311-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/christophe-malabat/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 184894415,
size: 0.5,
source: 18489,
target: 4415 });
// adding node
var x_node = Math.cos(2 * 6 * Math.PI / N) * 10;
var y_node = Math.sin(2 * 6 * Math.PI / N) * 10;
g.nodes.push({
id: 6159,
label: 'TEAM: Genetics of Macromolecular Interactions',
x: x_node,
y: y_node,
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/06/research.pasteur.fr_molecular-150x150.png',
page_url: 'https://research.pasteur.fr/en/team/gim/',
size: 35,
color: '#DDDDDD'
});
//link content to central post
g.edges.push({
id: 1372376159,
size: 0.5,
source: 137237,
target: 6159,
});
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8325,
label: 'Lucia Oreus',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_lucia-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/lucia-oreus/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61598325,
size: 0.5,
source: 6159,
target: 8325 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 8323,
label: 'Laurence Decourty',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/07/research.pasteur.fr_laurence2-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/laurence-decourty/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61598323,
size: 0.5,
source: 6159,
target: 8323 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 4411,
label: 'Cosmin Saveanu',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2015/05/research_pasteur-cosmin-saveanu-img-20220329-151106-crop-600-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/cosmin-saveanu/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 61594411,
size: 0.5,
source: 6159,
target: 4411 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4407) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61594407,
size: 0.5,
source: 6159,
target: 4407 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4406) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61594406,
size: 0.5,
source: 6159,
target: 4406 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4416) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61594416,
size: 0.5,
source: 6159,
target: 4416 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 87542,
label: 'Christelle Lenormand',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2017/04/research.pasteur.fr_foto-christelle-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/christelle-lenormand/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 615987542,
size: 0.5,
source: 6159,
target: 87542 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 6985) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61596985,
size: 0.5,
source: 6159,
target: 6985 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 117053,
label: 'Léna Audebert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2020/01/research_pasteur-lena_forweb-150x150.png',
page_url: 'https://research.pasteur.fr/en/member/lena-audebert/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6159117053,
size: 0.5,
source: 6159,
target: 117053 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 137237) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 6159137237,
size: 0.5,
source: 6159,
target: 137237 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 123368,
label: 'Agathe Gilbert',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2019/12/research_pasteur-agathegilbert-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/agathe-gilbert/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6159123368,
size: 0.5,
source: 6159,
target: 123368 });
//check if content already exist
if (x_node<0){
x_site = x_node + ((Math.random() * 2)-1) - offset_left;
}else{
x_site = x_node + ((Math.random() * 2)-1) + offset_left;
}
if (y_node<0){
y_site = y_node + ((Math.random() * 2)-1) - offset_left;
}else{
y_site = y_node + ((Math.random() * 2)-1) + offset_left;
}
// adding site
g.nodes.push({
id: 178717,
label: 'Toni Gouhier',
type: 'image',
url: 'https://research.pasteur.fr/wp-content/uploads/2022/03/research_pasteur-toni-gouhier-img-20220111-wa0000crop-150x150.jpg',
page_url: 'https://research.pasteur.fr/en/member/toni-gouhier/',
x: x_site,
y: y_site,
size: 10,
color: '#dddddd'
});
//link to content
g.edges.push({
id: 6159178717,
size: 0.5,
source: 6159,
target: 178717 });
//check if content already exist
// update node size depending on the amount of edges
g.nodes.forEach(function(n) {
if (n.id == 4408) {
n.size = n.size + 8;
}
});
//link to content
g.edges.push({
id: 61594408,
size: 0.5,
source: 6159,
target: 4408 });
var s = new sigma({
//container: document.getElementById('graph-main'),
graph: g,
renderer: {
// IMPORTANT:
// This works only with the canvas renderer, so the
// renderer type set as "canvas" is necessary here.
container: document.getElementById('graph-main'),
type: 'canvas'
},
settings: {
minNodeSize: 6,
maxNodeSize: 35,
mouseWheelEnabled: false,
font: 'Montserrat',
labelThreshold:25,
borderSize:1,
defaultNodeBorderColor: '#999',
sideMargin:25,
}
});
// We first need to save the original colors of our
// nodes and edges, like this:
s.graph.nodes().forEach(function(n) {
n.originalColor = n.color;
});
s.graph.edges().forEach(function(e) {
e.originalColor = e.color;
});
// When a node is clicked, we check for each node
// if it is a neighbor of the clicked one. If not,
// we set its color as grey, and else, it takes its
// original color.
// We do the same for the edges, and we only keep
// edges that have both extremities colored.
s.bind('clickNode', function(e) {
var nodeId = e.data.node.id,
toKeep = s.graph.neighbors(nodeId);
toKeep[nodeId] = e.data.node;
s.graph.nodes().forEach(function(n) {
if (toKeep[n.id])
n.color = '#35a9f5';
else
n.color = '#dddddd';
});
s.graph.edges().forEach(function(e) {
if (toKeep[e.source] && toKeep[e.target])
e.color = '#35a9f5';
else
e.color = '#dddddd';
});
// Since the data has been modified, we need to
// call the refresh method to make the colors
// update effective.
s.refresh();
});
// When the stage is clicked, we just color each
// node and edge with its original color.
s.bind('clickStage', function(e) {
s.graph.nodes().forEach(function(n) {
n.color = n.originalColor;
});
s.graph.edges().forEach(function(e) {
e.color = e.originalColor;
});
// Same as in the previous event:
s.refresh();
});
s.bind("doubleClickNode", function (e) {
$("#canvas-wrap, .sigma-scene, .sigma-mouse").val();
ajax_load_page( e.data.node.page_url );
});
var c = s.camera;
s.bind("rightClickStage", function (e) {
sigma.misc.animation.camera(c, {
ratio: c.ratio * c.settings('zoomingRatio')
}, {
duration: 200
});
});
// Configure the noverlap layout:
var noverlapListener = s.configNoverlap({
nodeMargin: 10,
scaleNodes: 0.3,
gridSize: 1,
easing: 'quadraticInOut', // animation transition function
duration: 4000 // animation duration. Long here for the purposes of this example only
});
// Bind the events:
noverlapListener.bind('start stop interpolate', function(e) {
//console.log(e.type);
if(e.type === 'start') {
//console.time('noverlap');
}
if(e.type === 'interpolate') {
//console.timeEnd('noverlap');
}
});
// Start the layout:
s.startNoverlap();
//s.refresh();
// Initialize the dragNodes plugin:
var dragListener = sigma.plugins.dragNodes(s, s.renderers[0]);
dragListener.bind('startdrag', function(event) {
});
dragListener.bind('drag', function(event) {
});
dragListener.bind('drop', function(event) {
});
dragListener.bind('dragend', function(event) {
});