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About

ONGOING PROJECTS

Galaxy administration/Maintenance (https://galaxy.web.pasteur.fr)
Bioweb:  Future directory of bioinformatics resources at the Institut Pasteur
ELIXIR Registry

SKILLS

Galaxy:  administration, API/Bioblend expertise
Programming: Python,  Javascript, Lua, R,
Development tools: GIT, Subversion, Emacs
Database: NoSQL (couchdb), MySQL, PostgreSQL
Bioinformatics: Preprocessing NGS data, MED-SuMo, Protein surface comparison, Protein functional  annotation.

OTHER ACTIVITIES

C3BI seminars and meetings management
Involved in Galaxy France Working Group (IFB)

FORMER PROJECTS

MetaGenSense(https://metagensense.web.pasteur.fr)
Disco-Bac (https://disco-bac.web.pasteur.fr)

Courses

Workshop: Bacterial RNAseq

We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […]

2016-06-06 09:00:00 2016-06-10 17:00:00 Europe/Paris Workshop: Bacterial RNAseq We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […] 28 Rue du Docteur Roux, Paris, France

Training: analysis of the transcriptome by RNAseq

The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […]

2016-10-10 09:00:00 2016-10-14 17:00:00 Europe/Paris Training: analysis of the transcriptome by RNAseq The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It  is […] 28 Rue du Docteur Roux, Paris, France

Projects

Tools

CV

FORMER PROFESSIONAL EXPERIENCE:

2011 – 2012 : Bioinformatics Engineer at Institut Pasteur in the platform Genotyping of Pathogens and Public health (PF8)
2009 – 2011 : Project Manager at MEDIT SA
(MED-SuMo server management: new functionalities and sources maintenance, Scientific validation, Prototype implementation for PPI comparison with MED-SuMo)
2006 – 2009 : Genome Analysis and Molecular Modelling PhD. at MEDIT SA / Paris-Diderot Université.
Title: Implémentation d’une méthode de classification de surfaces d’interactions protéiques et optimisation et extension du logiciel MED-SuMo (6 publications).

EDUCATION:

2009 : Molecular Modelling/Bioinformatics PhD. MEDIT SA / Paris-Diderot University (Paris VII)
2005 : Master 2 recherche en Biologie-Informatique, Paris-Diderot University (Paris VII)
2004 : Licence et Maîtrise d’Informatique, Université UPMC (Paris VI)

Publications

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