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© Research
Software

Sequanix: a dynamic graphical interface for Snakemake workflows

Scientific Fields
Diseases
Organisms
Applications
Technique
Starting Date
01
Jun 2016
Ending Date
01
Jun 2017
Status
Completed
Members
2
Structures
1

About

We designed a PyQt graphical user interface—Sequanix—aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines to a wide audience of users.

If you use Sequanix, please do not forget to cite us !

Desvillechabrol et al, Bioinformatics, Volume 34, Issue 11, 1 June 2018, Pages 1934–1936, https://doi.org/10.1093/bioinformatics/bty034

https://academic.oup.com/bioinformatics/article/34/11/1934/4817647