Présentation
Every Tuesday mornings from 10am to 12am, Hub engineers are enlisted to provide a direct support to any members of Institut Pasteur seeking help on bioinformatics or biostatistics related subjects. You can come directly to Yersin Building (24), Ground Floor.
Please note that open desks are suspended during Christmas & summer breaks, in august.
If you need urgent help from the Hub at that time, please ask a short questions submitted through our web site Hub Portal (https://hub-portal.pasteur.cloud/).
Hub engineers can provide support on :
- Design of experiment (from the statistical point)
- Analysis & integration of various types of data, including but not limited to :
- OMICS data
- epidemiological data
- time series data
- Statistics methods
- Software development
- Web tool development
- Database development
- Code review
| Sessions | Group | Hub members |
|---|---|---|
| 15-07-2025 | Group 5 |
Samar Berreira Ibraim Johann Dreo – Software Development, Decision support systems, Network analysis Hanna Julienne – Statistics, Development, Genomics Emmanuelle Permal – Genomics, Development, Transcriptomics |
| 22-07-2025 | Group 6 |
Agnès Baud – Metagenomic Quentin Giai Gianetto – Statistics, Proteomics Blaise Li – Software development, Automation, Reproducibility, Python, command-line Hélène Lopez-Maestre – Genomics, Transcriptomics, Single Cell Marie Schmit – Software development, Data integration |
| 29-07-2025 | Group 7 |
Bryan Brancotte – Web Development, Database management Pascal Campagne – Statistics, Genomics, GWAS Natalia Pietrosemoli – Systems bioinformatics, Transcriptomics, Proteomics, Metabolomics Najwa Taib – Phylogenetics |
Please use the following table to see available hub members for future sessions
| Sessions | Group | Hub members |
|---|---|---|
|
02/09/2025 13/01/2026 12/05/2026 |
Group 1 |
Claudia Chica – Transcriptomics, Epigenomics, Single cell Fabien Mareuil – Web development, Galaxy, Structural bioinformatics Adrien Pain – Genomics, Transcriptomics Emeline Perthame – Statistics, transcriptomics, Proteomics, Experimental design |
|
09/09/2025 20/01/2026 19/05/2026 |
Group 2 |
Stéphane Descorps-Declère – Structural annotation Eva Eleftheriou – Epigenomics, Genomics, Transcriptomics Elise Jacquemet – Statistics, Transcriptomics, Experimental design Bertrand Néron – Algorithmics, Software development, Database management |
|
16/09/2025 27/01/2026 26/05/2026 |
Group 3 |
Thomas Cokelaer – Algorithmics, Genomics, Transcriptomics, Assembly, Reproductible pipeline Bernd Jagla – Single cell, Cytometry data analysis, Transcriptomics Gaël Millot – Statistics, Genomics, Image analysis Nicolas Traut – Neuroimaging, Genomics |
|
23/09/2025 03/02/2026 02/06/2026 |
Group 4 |
Elodie Chapeaublanc – Web development, Database management Kevin Da Silva – Anđela Davidović – Mathematical analysis and modelling, scientific computing, numerical simulations, parameter inference, basics in data analysis, statistics and AI Yann Loe-Mie – Genomics, Transcriptomics, Epigenomics, Single cell |
|
30/09/2025 10/02/2026 09/06/2026 |
Group 5 |
Samar Berreira Ibraim François Laurent – Software development, Modelisation, Statistics Pierre Lechat – Software development, Variant calling Olivier Mirabeau – Transcriptomics, Genomics, Statistics, Single cell |
|
07/10/2025 17/02/2026 16/06/2026 |
Group 6 |
Almira Chervova – Epigenomics, Transcriptomics, Statistics, Single cell Johann Dreo – Optimization/Hyper-parameters setting, Algorithmics, Ontology building, Mathematical modeling, Software development, Decision support systems Sébastien Mella – Single Cell, Statistics Juliette Meyer – Statistics |
|
14/10/2025 24/02/2026 23/06/2026 |
Group 7 |
Julien Fumey – Genomics, Phylogenetics, Web dev, Nextflow Julia Kende – Phylogenetics, Software development & Algorithmics Benoît Lelandais – Image analysis, Software development, Artificial Intelligence Rania Ouazahrou – Transcriptomics, Genomics |
|
21/10/2025 03/03/2026 30/06/2026 |
Group 8 |
Freddy Cliquet – Algorithmics, Statistics, System biology Vincent Laville – Statistics, Development, Genomics Hélène Lopez-Maestre – Genomics, Transcriptomics, Single Cell Raphaël Tackx – Web development |
|
28/10/2025 10/03/2026 07/07/2026 |
Group 9 |
Amande Dieuaide – Web development Etienne Kornobis – Software development, Transcriptomics, Genomics Nathalie Lehmann – Single Cell, Transcriptomics, Pipeline development, Genome annotation Corinne Maufrais – Genomics, Data management |
|
04/11/2025 17/03/2026 14/07/2026 |
Group 10 |
Artem Baidaliuk – Virus discovery in metagenomic/metatranscriptomic data Stephan Fischer – Single Cell, Genomics Mickael Orgeur – Genomics, Transcriptomics Amandine Perrin – Software development, Comparative genomics |
|
11/11/2025 24/03/2026 21/07/2026 |
Group 11 |
Jérôme Bourret Daniele Capocefalo – Transcriptomics, Single cell, Multidimensional analysis, Biological Networks,Network theory, Python Rémi Planel – Web development, Database management, Galaxy Hugo Varet – Statistics, R, Metabolomics genomics |
|
18/11/2025 31/03/2026 28/07/2026 |
Group 12 |
Thomas Bigot – Sequence alignments, databases, taxonomic classification, divergent sequences detection, phylogeny Julie Lao – Projet ABRomics Damien Mornico – Genomics, Paleogenomics, (Transcriptomics) Stevenn Volant – Statistics, Metagenomics, Rshiny |
|
25/11/2025 07/04/2026 01/09/2026 |
Group 13 |
Amine Ghozlane – Metagenomic, Software Development Julien Gugluielmini – Phylogenetics, Genomics Vincent Guillemot – Statistics,R Amaury Vaysse – Genomics, R, GWAS |
|
02/12/2025 14/04/2026 |
Group 14 |
Frédéric Lemoine – Phylogenetics, Software development, Transcriptomics Nicolas Maillet -Algorithmics, Software development, Metagenomics, Stringology Arnaud Meng – Single Cell, Transcriptomics, Mass spectometry, pipeline Development Thomas Obadia – Statistics, Epidemiology |
|
09/12/2025 21/04/2026 |
Group 15 |
Joseph Josephides – Single Cell, Genomics, Transcriptomics, Machine Learning Rachel Legendre – Transcriptomics, Epigenomics Simon Malesys – Web development and databases, Javascript, Vue.js, Node.js Emmanuelle Permal – Genomics, Development, Transcriptomics |
|
16/12/2025 28/04/2026 |
Group 16 |
Agnès Baud – Metagenomic Quentin Giai Gianetto – Statistics, R, Proteomics, Protein-protein interaction networks, Pathway enrichment analysis Blaise Li – Software development, Automation, Reproducibility, Python, command-line Marie Schmit – Software development, Data integration |
|
06/01/2026 05/05/2026 |
Group 17 |
Bryan Brancotte – Kubernetes, Web development, Software development Pascal Campagne – Statistics, Genomics, GWAS Natalia Pietrosemoli – Systems bioinformatics, Transcriptomics, Proteomics, Metabolomics Najwa Taib – Phylogenetics |