• 2020
  Lacerda Mariano L, Rousseau M, Varet H, Legendre R, Gentek R, Saenz Coronilla J, Bajenoff M, Gomez Perdiguero E, Ingersoll MA, , Functionally distinct resident macrophage subsets differentially shape responses to infection in the bladder., Sci Adv 2020 Nov; 6(48): .
• 2020
  Stressmann FA, Bernal-Bayard J, Perez-Pascual D, Audrain B, Rendueles O, Briolat V, Bruchmann S, Volant S, Ghozlane A, Häussler S, Duchaud E, Levraud JP, Ghigo JM, , Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection., ISME J 2020 Oct 19. Online ahead of print..
• 2020
  Freel KC, Fouteau S, Roche D, Farasin J, Huber A, Koechler S, Peres M, Chiboub O, Varet H, Proux C, Deschamps J, Briandet R, Torchet R, Cruveiller S, Lièvremont D, Coppée JY, Barbe V, Arsène-Ploetze F, , Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2., Microb Genom 2020 Oct; (): .
• 2020
  Zavala-Alvarado C, Sismeiro O, Legendre R, Varet H, Bussotti G, Bayram J, G Huete S, Rey G, Coppée JY, Picardeau M, Benaroudj N, , The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress., PLoS Pathog 2020 Oct; 16(10): e1008904.
• 2020
  Stressmann F, Bernal-Bayard J, Pérez-Pascual D, Audrain B, Rendueles O, Briolat V, Bruchmann S, Volant S, Ghozlane A, Haussler S, Duchaud E, Levraud JP, Ghigo JM, Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection, The ISME J. 2020, in press.
• 2020
  Volant S, Lechat P, Woringer P, Motreff L, Campagne P, Malabat C, Kennedy S, Ghozlane A, , SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis., BMC Bioinformatics 2020 Aug; 21(1): 345.
• 2020
  Lecoeur H, Rosazza T, Kokou K, Varet H, Coppée JY, Lari A, Commère PH, Weil R, Meng G, Milon G, Späth GF, Prina E, Leishmania amazonensis Subverts the Transcription Factor Landscape in Dendritic Cells to Avoid Inflammasome Activation and Stall Maturation, Front Immunol . 2020 Jun 9;11:1098.
• 2020
  Pourpre R, Naudon L, Meziane H, Lakisic G, Jouneau L, Varet H, Legendre R, Wendling O, Selloum M, Proux C, Coppée JY, Herault Y, Bierne H, BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice, PLoS ONE 2020;15(5):e0232789.
• 2020
  Peyrusson F, Varet H, Nguyen TK, Legendre R, Sismeiro O, Coppée JY, Wolz C, Tenson T, Van Bambeke F, Intracellular Staphylococcus aureus persisters upon antibiotic exposure, Nat Commun 2020 May;11(1):2200.
• 2020
  Soler-Bistué A, Aguilar-Pierlé S, Garcia-Garcerá M, Val ME, Sismeiro O, Varet H, Sieira R, Krin E, Skovgaard O, Comerci DJ, Rocha EPC, Mazel D, Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae, BMC Biol. 2020 Apr;18(1):43.
• 2020
  Rey C, Chang YY, Latour-Lambert P, Varet H, Proux C, Legendre R, Coppée JY, Enninga J, Transcytosis subversion by M cell-to-enterocyte spread promotes Shigella flexneri and Listeria monocytogenes  intracellular bacterial dissemination, PLoS Pathog. 2020 Apr;16(4):e1008446.
• 2020
  Aguilar-Rojas A, Castellanos-Castro S, Matondo M, Gianetto QG, Varet H, Sismeiro O, Legendre R, Fernandes J, Hardy D, Coppée JY, Olivo-Marin JC, Guillen N, , Insights into amebiasis using a human 3D-intestinal model., Cell Microbiol 2020 Aug; 22(8): e13203.
• 2020
  Bottai D, Frigui W, Sayes F, Di Luca M, Spadoni D, Pawlik A, Zoppo M, Orgeur M, Khanna V, Hardy D, Mangenot S, Barbe V, Medigue C, Ma L, Bouchier C, Tavanti A, Larrouy-Maumus G, Brosch R, TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages, Nat Commun 2020 Feb;11(1):684.
• 2020
  Chaix R, Fagny M, Cosin-Tomás M, Alvarez-López M, Lemee L, Regnault B, Davidson RJ, Lutz A, Kaliman P, , Differential DNA methylation in experienced meditators after an intensive day of mindfulness-based practice: Implications for immune-related pathways., Brain Behav. Immun. 2020 Feb; 84(): 36-44.
• 2019
  Levraud JP, Jouneau L, Briolat V, Laghi V, Boudinot P, , IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity., J. Immunol. 2019 12; 203(12): 3361-3373.
• 2019
  Dubois V, Pawlik A, Bories A, Le Moigne V, Sismeiro O, Legendre R, Varet H, Rodríguez-Ordóñez MDP, Gaillard JL, Coppée JY, Brosch R, Herrmann JL, Girard-Misguich F, Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages, PLoS Pathog. 2019 Nov;15(11):e1008069.
• 2019
  Carballido Lopez A, Cunrath O, Forster A, Pérard J, Graulier G, Legendre R, Varet H, Sismeiro O, Perraud Q, Pesset B, Saint Auguste P, Bumann D, Mislin GLA, Coppee JY, Michaud-Soret I, Fechter P, Schalk IJ, Non-specific interference of cobalt with siderophore-dependent iron uptake pathways, Metallomics 2019 Nov;11(11):1937-1951.
• 2019
  Hommel B, Sturny-Leclère A, Volant S, Veluppillai N, Duchateau M, Yu CH, Hourdel V, Varet H, Matondo M, Perfect JR, Casadevall A, Dromer F, Alanio A, , Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype., PLoS Pathog 2019 07; 15(7): e1007945.
• 2019
  Van den Bossche A, Varet H, Sury A, Sismeiro O, Legendre R, Coppee JY, Mathys V, Ceyssens PJ, Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid, Tuberculosis (Edinb) 2019 Jul;117:18-23.
• 2019
  Dubois T, Tremblay YDN, Hamiot A, Martin-Verstraete I, Deschamps J, Monot M, Briandet R, Dupuy B, , A microbiota-generated bile salt induces biofilm formation in Clostridium difficile., NPJ Biofilms Microbiomes 2019 05; 5(1): 14.
• 2019
  Weill FX, Domman D, Njamkepo E, Almesbahi AA, Naji M, Nasher SS, Rakesh A, Assiri AM, Sharma NC, Kariuki S, Pourshafie MR, Rauzier J, Abubakar A, Carter JY, Wamala JF, Seguin C, Bouchier C, Malliavin T, Bakhshi B, Abulmaali HHN, Kumar D, Njoroge SM, Malik MR, Kiiru J, Luquero FJ, Azman AS, Ramamurthy T, Thomson NR, Quilici ML, Genomic insights into the 2016-2017 cholera epidemic in Yemen, Nature 2019 Jan;.
• 2018
  Fourati et al, A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection., Nat Commun. 2018 Oct 24;9(1):4418.
• 2018
  Lahbib S, Leblond CS, Hamza M, Regnault B, Lemée L, Mathieu A, Jaouadi H, Mkaouar R, Youssef-Turki IB, Belhadj A, Kraoua I, Bourgeron T, Abdelhak S, Homozygous 2p11.2 deletion supports the implication of ELMOD3 in hearing loss and reveals the potential association of CAPG with ASD/ID etiology, J. Appl. Genet. 2019 Feb;60(1):49-56.
• 2018
  Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer, Sequana Coverage: Detection and Characterization of Genomic Variations using Running Median and Mixture Models, GigaScience, giy110, https://doi.org/10.1093/gigascience/giy110.
• 2018
  Hugo Varet, Jean-Yves Coppée, checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes, Bioinformatics, 2018.
• 2018
  Maataoui, Naouale; Mayet, Aurélie; Duron, Sandrine; Delacour, Hervé; Mentré, France; Laouenan, Cédric; Desvillechabrol, Dimitri; Cokelaer, Thomas; Meynard, Jean Baptiste; Ducher, Annie, High Acquisition Rate of ESBL-Producing Enterobacteriaceae among French Military Personnel on Mission Abroad, without Evidence of Inter-Individual Transmission., Maataoui et al, Clinical Microbiology and Infection, 2018.
• 2018
  Angebault C, Ghozlane A, Volant S, Botterel F, d'Enfert C, Bougnoux ME, Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols, PLoS ONE 2018;13(8):e0201174.
• 2018
  Varet H, Shaulov Y, Sismeiro O, Trebicz-Geffen M, Legendre R, Coppée JY, Ankri S, Guillen N, Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica, Sci Rep 2018 Jun;8(1):9042.
• 2018
  Krin E, Pierlé SA, Sismeiro O, Jagla B, Dillies MA, Varet H, Irazoki O, Campoy S, Rouy Z, Cruveiller S, Médigue C, Coppée JY, Mazel D, Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation, BMC Genomics 2018 May;19(1):373.
• 2018
  Cui L, Vigouroux A, Rousset F, Varet H, Khanna V, Bikard D, A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9, Nat Commun. 2018 May 15;9(1):1912. doi: 10.1038/s41467-018-04209-5.
• 2018
  Dickson LB, Ghozlane A, Volant S, Bouchier C, Ma L, Vega-Rúa A, Dusfour I, Jiolle D, Paupy C, Mayanja MN, Kohl A, Lutwama JJ, Duong V, Lambrechts L, Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome, Parasit Vectors 2018 03;11(1):207.
• 2018
  Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, Sean Kennedy and Thomas Cokelaer, Sequanix: A Dynamic Graphical Interface for Snakemake Workflows, https://doi.org/10.1093/bioinformatics/bty034.
• 2017
  Raquin V, Merkling SH, Gausson V, Moltini-Conclois I, Frangeul L, Varet H, Dillies MA, Saleh MC, Lambrechts L, Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut, PLoS Negl Trop Dis 2017 Dec;11(12):e0006152.
• 2017
  Wang Y, Gao X, Ghozlane A, Hu H, Li X, Xiao Y, Li D, Yu G, Zhang T, Characteristics of Fecal Microbiota in Pediatric Crohn’s Disease and Their Dynamic Changes During Infliximab Therapy, J Crohns Colitis 2017 Nov;.
• 2017
  de Gunzburg J, Ghozlane A, Ducher A, Le Chatelier E, Duval X, Ruppé E, Armand-Lefevre L, Sablier-Gallis F, Burdet C, Alavoine L, Chachaty E, Augustin V, Varastet M, Levenez F, Kennedy S, Pons N, Mentré F, Andremont A, Protection of the human gut microbiome from antibiotics, J. Infect. Dis. 2017 Nov;.
• 2017
  Léo Machado, Joana Esteves de Lima, Odile Fabre, Caroline Proux, Rachel Legendre, Anikó Szegedi, Hugo Varet, Lars Roed Ingerslev, Romain Barrès, Frédéric Relaix, Philippos Mourikis, In Situ Fixation Redefines Quiescence and Early Activation of Skeletal Muscle Stem Cells, Cell Reports , Volume 21 , Issue 7 , 1982 - 1993.
• 2017
  Martins RM, Macpherson CR, Claes A, Scheidig-Benatar C, Sakamoto H, Yam XY, Preiser P, Goel S, Wahlgren M, Sismeiro O, Coppée JY, Scherf A, An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum, Sci Rep 2017 Oct;7(1):14042.
• 2017
  Chaix R, Alvarez-López MJ, Fagny M, Lemee L, Regnault B, Davidson RJ, Lutz A, Kaliman P, Epigenetic clock analysis in long-term meditators, Psychoneuroendocrinology 2017 Nov;85:210-214.
• 2017
  Thomas Cokelaer, Dimitri Desvillechabrol, Rachel Legendre, Mélissa Cardon, Sequana: a set of snakemake NGS pipelines, J. Open Source Softw, 2 p352.
• 2017
  Dickson LB, Jiolle D, Minard G, Moltini-Conclois I, Volant S, Ghozlane A, Bouchier C, Ayala D, Paupy C, Moro CV, Lambrechts L, Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector, Sci Adv 2017 Aug;3(8):e1700585.
• 2017
  Langevin C, Aleksejeva E, Houel A, Briolat V, Torhy C, Lunazzi A, Levraud JP, Boudinot P, , FTR83, a Member of the Large Fish-Specific finTRIM Family, Triggers IFN Pathway and Counters Viral Infection., Front Immunol 2017 ; 8(): 617.
• 2017
  Passoni G, Langevin C, Palha N, Mounce BC, Briolat V, Affaticati P, De Job E, Joly JS, Vignuzzi M, Saleh MC, Herbomel P, Boudinot P, Levraud JP, , Imaging of viral neuroinvasion in the zebrafish reveals that Sindbis and chikungunya viruses favour different entry routes., Dis Model Mech 2017 07; 10(7): 847-857.
• 2017
  Eduati F, Doldàn-Martelli V, Klinger B, Cokelaer T, Sieber A, Kogera F, Dorel M, Garnett MJ, Blüthgen N, Saez-Rodriguez J, Drug resistance mechanisms in colorectal cancer dissected with cell type-specific dynamic logic models, Cancer Res. 2017 Apr;.
• 2017
  Leroy M, Piton J, Gilet L, Pellegrini O, Proux C, Coppée JY, Figaro S, Condon C, Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis, EMBO J. 2017 May;36(9):1167-1181.
• 2017
  Julien Farasin, Sandrine Koechler, Hugo Varet, Julien Deschamps, Marie-Agnès Dillies, Caroline Proux, Mathieu Erhardt, Aline Huber, Bernd Jagla, Romain Briandet, Jean-Yves Coppée, Florence Arsène-Ploetze, Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite, Microb Biotechnol. 2017 Feb 7. doi: 10.1111/1751-7915.12556.
• 2016
  Witkowski B, Duru V, Khim N, Ross LS, Saintpierre B, Beghain J, Chy S, Kim S, Ke S, Kloeung N, Eam R, Khean C, Ken M, Loch K, Bouillon A, Domergue A, Ma L, Bouchier C, Leang R, Huy R, Nuel G, Barale JC, Legrand E, Ringwald P, Fidock DA, Mercereau-Puijalon O, Ariey F, Ménard D, A surrogate marker of piperaquine-resistant Plasmodium falciparum malaria: a phenotype-genotype association study, Lancet Infect Dis 2017 Feb;17(2):174-183.
• 2016
  Christian Weber, Mikael Koutero, Marie-Agnes Dillies, Hugo Varet, Cesar Lopez-Camarillo, Jean Yves Coppée, Chung-Chau Hon, Nancy Guillén, Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment, Sci Rep. 2016 Oct 21;6:35852. doi: 10.1038/srep35852..
• 2016
  Gonzalez-Hilarion S, Paulet D, Lee KT, Hon CC, Lechat P, Mogensen E, Moyrand F, Proux C, Barboux R, Bussotti G, Hwang J, Coppée JY, Bahn YS, Janbon G, Intron retention-dependent gene regulation in Cryptococcus neoformans, Sci Rep 2016 08;6:32252.
• 2016
  Pasi M, Mornico D, Volant S, Juchet A, Batisse J, Bouchier C, Parissi V, Ruff M, Lavery R, Lavigne M, DNA minicircles clarify the specific role of DNA structure on retroviral integration, Nucleic Acids Res. 2016 Jul;.
• 2016
  Demarta-Gatsi C, Smith L, Thiberge S, Peronet R, Commere PH, Matondo M, Apetoh L, Bruhns P, Ménard R, Mécheri S, , Protection against malaria in mice is induced by blood stage-arresting histamine-releasing factor (HRF)-deficient parasites., J Exp Med 2016 07; 213(8): 1419-28.
• 2016
  Mazuet C, Legeay C, Sautereau J, Ma L, Bouchier C, Bouvet P, Popoff MR, Diversity of Group I and II Clostridium botulinum Strains from France Including Recently Identified Subtypes, Genome Biol Evol 2016 06;8(6):1643-60.
• 2016
  Hugo Varet, Loraine Brillet-Guéguen, Jean-Yves Coppée, Marie-Agnès Dillies, SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data, PLoS One. 2016 Jun 9;11(6):e0157022. doi: 10.1371/journal.pone.0157022. eCollection 2016.
• 2016
  Maganga GD, Relmy A, Bakkali-Kassimi L, Ngoubangoye B, Tsoumbou T, Bouchier C, N'Dilimabaka N, Leroy EM, Zientara S, Berthet N, Molecular characterization of Orf virus in goats in Gabon, Central Africa, Virol. J. 2016;13:79.
• 2016
  Val ME, Marbouty M, de Lemos Martins F, Kennedy SP, Kemble H, Bland MJ, Possoz C, Koszul R, Skovgaard O, Mazel D., A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae., Sci Adv. 2016 Apr 22;2(4):e1501914. doi: 10.1126/sciadv.1501914.
• 2016
  Mazuet C, Yoon EJ, Boyer S, Pignier S, Blanc T, Doehring I, Meziane-Cherif D, Dumant-Forest C, Sautereau J, Legeay C, Bouvet P, Bouchier C, Quijano-Roy S, Pestel-Caron M, Courvalin P, Popoff MR, A penicillin- and metronidazole-resistant Clostridium botulinum strain responsible for an infant botulism case, Clin. Microbiol. Infect. 2016 Jul;22(7):644.e7-644.e12.
• 2016
  Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX, Global phylogeography and evolutionary history of Shigella dysenteriae type 1, Nat Microbiol 2016 03;1:16027.
• 2016
  Segura I, Lange C, Knevels E, Moskalyuk A, Pulizzi R, Eelen G, Chaze T, Tudor C, Boulegue C, Holt M, Daelemans D, Matondo M, Ghesquière B, Giugliano M, Ruiz de Almodovar C, Dewerchin M, Carmeliet P, The Oxygen Sensor PHD2 Controls Dendritic Spines and Synapses via Modification of Filamin A, Cell Rep 2016 Mar;14(11):2653-67.
• 2016
  Sapriel G, Konjek J, Orgeur M, Bouri L, Frézal L, Roux AL, Dumas E, Brosch R, Bouchier C, Brisse S, Vandenbogaert M, Thiberge JM, Caro V, Ngeow YF, Tan JL, Herrmann JL, Gaillard JL, Heym B, Wirth T, Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications, BMC Genomics 2016 Feb;17:118.
• 2016
  Glaser P, Martins-Simões P, Villain A, Barbier M, Tristan A, Bouchier C, Ma L, Bes M, Laurent F, Guillemot D, Wirth T, Vandenesch F, Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage, MBio 2016 Feb;7(1):e02183-15.
• 2016
  Boritsch EC, Frigui W, Cascioferro A, Malaga W, Etienne G, Laval F, Pawlik A, Le Chevalier F, Orgeur M, Ma L, Bouchier C, Stinear TP, Supply P, Majlessi L, Daffé M, Guilhot C, Brosch R, pks5-recombination-mediated surface remodelling in Mycobacterium tuberculosis emergence, Nat Microbiol 2016 Jan;1:15019.
• 2015
  Bernut A, Viljoen A, Dupont C, Sapriel G, Blaise M, Bouchier C, Brosch R, de Chastellier C, Herrmann JL, Kremer L, Insights into the smooth-to-rough transitioning in Mycobacterium bolletii unravels a functional Tyr residue conserved in all mycobacterial MmpL family members, Mol. Microbiol. 2016 Mar;99(5):866-83.
• 2015
  Berthet N, Frangeul L, Olaussen KA, Brambilla E, Dorvault N, Girard P, Validire P, Fadel E, Bouchier C, Gessain A, Soria JC, No evidence for viral sequences in five lepidic adenocarcinomas (former “BAC”) by a high-throughput sequencing approach, BMC Res Notes 2015;8:782.
• 2015
  Lavergne A, de Thoisy B, Tirera S, Donato D, Bouchier C, Catzeflis F, Lacoste V, Identification of lymphocytic choriomeningitis mammarenavirus in house mouse (Mus musculus, Rodentia) in French Guiana, Infect. Genet. Evol. 2016 Jan;37:225-30.
• 2015
  Tebbi A, Levillayer F, Jouvion G, Fiette L, Soubigou G, Varet H, Boudjadja N, Cairo S, Hashimoto K, Suzuki AM, Carninci P, Carissimo A, di Bernardo D, Wei Y, Deficiency of multidrug resistance 2 contributes to cell transformation through oxidative stress, Carcinogenesis 2016 Jan;37(1):39-48.
• 2015
  Balloy V, Varet H, Dillies MA, Proux C, Jagla B, Coppée JY, Tabary O, Corvol H, Chignard M, Guillot L, Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns, PLoS ONE 2015;10(10):e0140979.
• 2015
  Saffarian A, Mulet C, Naito T, Bouchier C, Tichit M, Ma L, Grompone G, Sansonetti PJ, Pédron T, Draft Genome Sequences of Acinetobacter parvus CM11, Acinetobacter radioresistens CM38, and Stenotrophomonas maltophilia BR12, Isolated from Murine Proximal Colonic Tissue, Genome Announc 2015;3(5).
• 2015
  Monot M, Eckert C, Lemire A, Hamiot A, Dubois T, Tessier C, Dumoulard B, Hamel B, Petit A, Lalande V, Ma L, Bouchier C, Barbut F, Dupuy B, Clostridium difficile: New Insights into the Evolution of the Pathogenicity Locus, Sci Rep 2015;5:15023.
• 2015
  Ménard S, Ben Haddou T, Ramadani AP, Ariey F, Iriart X, Beghain J, Bouchier C, Witkowski B, Berry A, Mercereau-Puijalon O, Benoit-Vical F, Induction of Multidrug Tolerance in Plasmodium falciparum by Extended Artemisinin Pressure, Emerging Infect. Dis. 2015 Oct;21(10):1733-41.
• 2015
  Vembar SS, Macpherson CR, Sismeiro O, Coppée JY, Scherf A, The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages, Genome Biol. 2015;16:212.
• 2015
  Morello E, Mallet A, Konto-Ghiorghi Y, Chaze T, Mistou MY, Oliva G, Oliveira L, Di Guilmi AM, Trieu-Cuot P, Dramsi S, Evidence for the Sialylation of PilA, the PI-2a Pilus-Associated Adhesin of Streptococcus agalactiae Strain NEM316, PLoS ONE 2015;10(9):e0138103.
• 2015
  Descorps-Declère S, Saguez C, Cournac A, Marbouty M, Rolland T, Ma L, Bouchier C, Moszer I, Dujon B, Koszul R, Richard GF, Genome-wide replication landscape of Candida glabrata, BMC Biol. 2015 Sep;13:69.
• 2015
  Mombo IM, Berthet N, Lukashev AN, Bleicker T, Brünink S, Léger L, Atencia R, Cox D, Bouchier C, Durand P, Arnathau C, Brazier L, Fair JN, Schneider BS, Drexler JF, Prugnolle F, Drosten C, Renaud F, Leroy EM, Rougeron V, First Detection of an Enterovirus C99 in a Captive Chimpanzee with Acute Flaccid Paralysis, from the Tchimpounga Chimpanzee Rehabilitation Center, Republic of Congo, PLoS ONE 2015;10(8):e0136700.
• 2015
  Surinova S, Choi M, Tao S, Schüffler PJ, Chang CY, Clough T, Vysloužil K, Khoylou M, Srovnal J, Liu Y, Matondo M, Hüttenhain R, Weisser H, Buhmann JM, Hajdúch M, Brenner H, Vitek O, Aebersold R, Prediction of colorectal cancer diagnosis based on circulating plasma proteins, EMBO Mol Med 2015 Sep;7(9):1166-78.
• 2015
  Santos JC, Duchateau M, Fredlund J, Weiner A, Mallet A, Schmitt C, Matondo M, Hourdel V, Chamot-Rooke J, Enninga J, , The COPII complex and lysosomal VAMP7 determine intracellular Salmonella localization and growth., Cell Microbiol 2015 Dec; 17(12): 1699-720.
• 2015
  Simon-Loriere E, Faye O, Faye O, Koivogui L, Magassouba N, Keita S, Thiberge JM, Diancourt L, Bouchier C, Vandenbogaert M, Caro V, Fall G, Buchmann JP, Matranga CB, Sabeti PC, Manuguerra JC, Holmes EC, Sall AA, Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic, Nature 2015 Aug;524(7563):102-4.
• 2015
  Sacco E, Cortes M, Josseaume N, Bouchier C, Dubée V, Hugonnet JE, Mainardi JL, Rice LB, Arthur M, Mutation landscape of acquired cross-resistance to glycopeptide and β-lactam antibiotics in Enterococcus faecium, Antimicrob. Agents Chemother. 2015 Sep;59(9):5306-15.
• 2015
  Rosinski-Chupin I, Sauvage E, Sismeiro O, Villain A, Da Cunha V, Caliot ME, Dillies MA, Trieu-Cuot P, Bouloc P, Lartigue MF, Glaser P, Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae, BMC Genomics 2015 May;16:419.
• 2015
  Dequivre M, Diel B, Villard C, Sismeiro O, Durot M, Coppée JY, Nesme X, Vial L, Hommais F, Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58, Mol. Plant Microbe Interact. 2015 May;28(5):580-9.
• 2015
  Mazuet C, Bouchier C, Popoff MR, Draft Genome Sequence of Clostridium botulinum Strain 277-00 Type B2, Genome Announc 2015;3(2).
• 2015
  Berthet N, Périchon B, Mazuet C, Chapetón-Montes D, Bouchier C, Bouvet P, Legeay C, Popoff MR, Courvalin P, A vanG-type locus in Clostridium argentinense, J. Antimicrob. Chemother. 2015 Jul;70(7):1942-5.
• 2015
  Clermont D, Motreff L, Passet V, Fernandez JC, Bizet C, Brisse S, , Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov., Int J Syst Evol Microbiol 2015 May; 65(Pt 5): 1486-1490.
• 2015
  Kasher PR, Jenkinson EM, Briolat V, Gent D, Morrissey C, Zeef LA, Rice GI, Levraud JP, Crow YJ, , Characterization of samhd1 morphant zebrafish recapitulates features of the human type I interferonopathy Aicardi-Goutières syndrome., J. Immunol. 2015 Mar; 194(6): 2819-25.
• 2015
  Thierry A, Khanna V, Créno S, Lafontaine I, Ma L, Bouchier C, Dujon B, Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes, Nat Commun 2015 Jan;6:6154.
• 2015
  Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ, Holden MT, Poyart C, Glaser P, Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline, Nat Commun 2015 Jan;6:6108.
• 2015
  Bouvet P, Sautereau J, Le Coustumier A, Mory F, Bouchier C, Popoff MR, Foot Infection by Clostridium sordellii: Case Report and Review of 15 Cases in France, J. Clin. Microbiol. 2015 Apr;53(4):1423-7.
• 2015
  Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Kolb A, Monot M, Dupuy B, Duarte SS, Jagla B, Coppée JY, Beraud M, Norel F, Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding, Nucleic Acids Res. 2015 Feb;43(3):1456-68.
• 2014
  Almelli T, Nuel G, Bischoff E, Aubouy A, Elati M, Wang CW, Dillies MA, Coppée JY, Ayissi GN, Basco LK, Rogier C, Ndam NT, Deloron P, Tahar R, Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers, PLoS ONE 2014;9(12):e114401.
• 2014
  Wasels F, Monot M, Spigaglia P, Barbanti F, Ma L, Bouchier C, Dupuy B, Mastrantonio P, Inter- and intraspecies transfer of a Clostridium difficile conjugative transposon conferring resistance to MLSB, Microb. Drug Resist. 2014 Dec;20(6):555-60.
• 2014
  Mazuet C, Sautereau J, Legeay C, Bouchier C, Bouvet P, Popoff MR, An atypical outbreak of food-borne botulism due to Clostridium botulinum types B and E from ham, J. Clin. Microbiol. 2015 Feb;53(2):722-6.
• 2014
  Salissou A, Zamanka H, Biyghe Binze B, Rivière T, Tichit M, Ibrahim ML, Fandeur T, Low Prevalence of Pfcrt Resistance Alleles among Patients with Uncomplicated Falciparum Malaria in Niger Six Years after Chloroquine Withdrawal, Malar Res Treat 2014;2014:614190.
• 2014
  N' Dilimabaka N, Berthet N, Rougeron V, Mangombi JB, Durand P, Maganga GD, Bouchier C, Schneider BS, Fair J, Renaud F, Leroy EM, Evidence of lymphocytic choriomeningitis virus (LCMV) in domestic mice in Gabon: risk of emergence of LCMV encephalitis in Central Africa, J. Virol. 2015 Jan;89(2):1456-60.
• 2014
  McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, Searle SM, Stahl BA, Tabin C, Volff JN, Yoshizawa M, Warren WC, The cavefish genome reveals candidate genes for eye loss, Nat Commun 2014;5:5307.
• 2014
  Khim N, Andrianaranjaka V, Popovici J, Kim S, Ratsimbasoa A, Benedet C, Barnadas C, Durand R, Thellier M, Legrand E, Musset L, Menegon M, Severini C, Nour BY, Tichit M, Bouchier C, Mercereau-Puijalon O, Ménard D, Effects of mefloquine use on Plasmodium vivax multidrug resistance, Emerging Infect. Dis. 2014 Oct;20(10):1637-44.
• 2014
  Leblond CS, Nava C, Polge A, Gauthier J, Huguet G, Lumbroso S, Giuliano F, Stordeur C, Depienne C, Mouzat K, Pinto D, Howe J, Lemière N, Durand CM, Guibert J, Ey E, Toro R, Peyre H, Mathieu A, Amsellem F, Rastam M, Gillberg IC, Rappold GA, Holt R, Monaco AP, Maestrini E, Galan P, Heron D, Jacquette A, Afenjar A, Rastetter A, Brice A, Devillard F, Assouline B, Laffargue F, Lespinasse J, Chiesa J, Rivier F, Bonneau D, Regnault B, Zelenika D, Delepine M, Lathrop M, Sanlaville D, Schluth-Bolard C, Edery P, Perrin L, Tabet AC, Schmeisser MJ, Boeckers TM, Coleman M, Sato D, Szatmari P, Scherer SW, Rouleau GA, Betancur C, Leboyer M, Gillberg C, Delorme R, Bourgeron T, Meta-analysis of SHANK Mutations in Autism Spectrum Disorders: a gradient of severity in cognitive impairments, PLoS Genet. 2014 Sep;10(9):e1004580.
• 2014
  Scornec H, Tichit M, Bouchier C, Pédron T, Cavin JF, Sansonetti PJ, Licandro-Seraut H, Rapid 96-well plates DNA extraction and sequencing procedures to identify genome-wide transposon insertion sites in a difficult to lyse bacterium: Lactobacillus casei, J. Microbiol. Methods 2014 Nov;106:78-82.
• 2014
  Genth H, Pauillac S, Schelle I, Bouvet P, Bouchier C, Varela-Chavez C, Just I, Popoff MR, Haemorrhagic toxin and lethal toxin from Clostridium sordellii strain vpi9048: molecular characterization and comparative analysis of substrate specificity of the large clostridial glucosylating toxins, Cell. Microbiol. 2014 Nov;16(11):1706-21.
• 2014
  Qin N, Yang F, Li A, Prifti E, Chen Y, Shao L, Guo J, Le Chatelier E, Yao J, Wu L, Zhou J, Ni S, Liu L, Pons N, Batto JM, Kennedy SP, Leonard P, Yuan C, Ding W, Chen Y, Hu X, Zheng B, Qian G, Xu W, Ehrlich SD, Zheng S, Li L, Alterations of the human gut microbiome in liver cirrhosis, Nature 2014 Sep;513(7516):59-64.
• 2014
  Heikkinen AT, Friedlein A, Matondo M, Hatley OJ, Petsalo A, Juvonen R, Galetin A, Rostami-Hodjegan A, Aebersold R, Lamerz J, Dunkley T, Cutler P, Parrott N, Quantitative ADME proteomics – CYP and UGT enzymes in the Beagle dog liver and intestine, Pharm. Res. 2015 Jan;32(1):74-90.
• 2014
  Bolotin A, de Wouters T, Schnupf P, Bouchier C, Loux V, Rhimi M, Jamet A, Dervyn R, Boudebbouze S, Blottière HM, Sorokin A, Snel J, Cerf-Bensussan N, Gaboriau-Routhiau V, van de Guchte M, Maguin E, Genome Sequence of “Candidatus Arthromitus” sp. Strain SFB-Mouse-NL, a Commensal Bacterium with a Key Role in Postnatal Maturation of Gut Immune Functions, Genome Announc 2014;2(4).
• 2014
  Mombo IM, Berthet N, Bouchier C, Fair JN, Schneider BS, Renaud F, Leroy EM, Rougeron V, Characterization of a genogroup I sapovirus isolated from chimpanzees in the republic of congo, Genome Announc 2014;2(4).
• 2014
  Ma L, Shen CJ, Cohen ÉA, Xiong SD, Wang JH, miRNA-1236 inhibits HIV-1 infection of monocytes by repressing translation of cellular factor VprBP, PLoS ONE 2014;9(6):e99535.
• 2014
  Magalie Duchateau, Thomas J.D. Jørgensen, Ophélie Robine, Edith Nicol, Christian Malosse, Julia Chamot-Rooke, Guillaume van der Rest, Ion source parameters and hydrogen scrambling in the ECD of selectively deuterated peptides, IJMS, 2014, 367, 21:27.
• 2014
  Jang SM, Azebi S, Soubigou G, Muchardt C, DYRK1A phoshorylates histone H3 to differentially regulate the binding of HP1 isoforms and antagonize HP1-mediated transcriptional repression, EMBO Rep. 2014 Jun;15(6):686-94.
• 2014
  Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Monot M, Jagla B, Coppée JY, Dupuy B, Norel F, Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella, PLoS ONE 2014;9(5):e96918.
• 2014
  Chaze T, Guillot A, Valot B, Langella O, Chamot-Rooke J, Di Guilmi AM, Trieu-Cuot P, Dramsi S, Mistou MY, O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry, Mol. Cell Proteomics 2014 Sep;13(9):2168-82.
• 2014
  Reuter S, Connor TR, Barquist L, Walker D, Feltwell T, Harris SR, Fookes M, Hall ME, Petty NK, Fuchs TM, Corander J, Dufour M, Ringwood T, Savin C, Bouchier C, Martin L, Miettinen M, Shubin M, Riehm JM, Laukkanen-Ninios R, Sihvonen LM, Siitonen A, Skurnik M, Falcão JP, Fukushima H, Scholz HC, Prentice MB, Wren BW, Parkhill J, Carniel E, Achtman M, McNally A, Thomson NR, Parallel independent evolution of pathogenicity within the genus Yersinia, Proc. Natl. Acad. Sci. U.S.A. 2014 May;111(18):6768-73.
• 2014
  Janbon G, Ormerod KL, Paulet D, Byrnes EJ, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS, Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation, PLoS Genet. 2014 Apr;10(4):e1004261.
• 2014
  Subota I, Julkowska D, Vincensini L, Reeg N, Buisson J, Blisnick T, Huet D, Perrot S, Santi-Rocca J, Duchateau M, Hourdel V, Rousselle JC, Cayet N, Namane A, Chamot-Rooke J, Bastin P, Proteomic analysis of intact flagella of procyclic Trypanosoma brucei cells identifies novel flagellar proteins with unique sub-localization and dynamics, Mol. Cell Proteomics 2014 Jul;13(7):1769-86.
• 2014
  Guyet A, Benaroudj N, Proux C, Gominet M, Coppée JY, Mazodier P, Identified members of the Streptomyces lividans AdpA regulon involved in differentiation and secondary metabolism, BMC Microbiol. 2014;14:81.
• 2014
  Eshghi A, Becam J, Lambert A, Sismeiro O, Dillies MA, Jagla B, Wunder EA, Ko AI, Coppee JY, Goarant C, Picardeau M, A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans, Infect. Immun. 2014 Jun;82(6):2542-52.
• 2014
  Briolat V, Jouneau L, Carvalho R, Palha N, Langevin C, Herbomel P, Schwartz O, Spaink HP, Levraud JP, Boudinot P, , Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes., J. Immunol. 2014 May; 192(9): 4328-41.
• 2014
  Bécavin C, Bouchier C, Lechat P, Archambaud C, Creno S, Gouin E, Wu Z, Kühbacher A, Brisse S, Pucciarelli MG, García-del Portillo F, Hain T, Portnoy DA, Chakraborty T, Lecuit M, Pizarro-Cerdá J, Moszer I, Bierne H, Cossart P, Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity, MBio 2014;5(2):e00969-14.
• 2014
  Rentsch CA, Birkhäuser FD, Biot C, Gsponer JR, Bisiaux A, Wetterauer C, Lagranderie M, Marchal G, Orgeur M, Bouchier C, Bachmann A, Ingersoll MA, Brosch R, Albert ML, Thalmann GN, Bacillus Calmette-Guérin strain differences have an impact on clinical outcome in bladder cancer immunotherapy, Eur. Urol. 2014 Oct;66(4):677-88.
• 2014
  Dubois-Colas N, Petit-Jentreau L, Barreiro LB, Durand S, Soubigou G, Lecointe C, Klibi J, Rezaï K, Lokiec F, Coppée JY, Gicquel B, Tailleux L, Extracellular adenosine triphosphate affects the response of human macrophages infected with Mycobacterium tuberculosis, J. Infect. Dis. 2014 Sep;210(5):824-33.
• 2014
  George Rosenberger , Ching Chiek Koh , Tiannan Guo , Hannes L. Röst, Petri Kouvonen, Ben C. Collins  , Moritz Heusel, Yansheng Liu  , Etienne Caron, Anton Vichalkovski , Marco Faini , Olga T. Schubert , Pouya Faridi , H. Alexander Ebhard , Mariette Matondo, Henry Lam , Samuel L. Bader , David S. Campbell, Eric W. Deutsch, Robert L. Morit , Stephen Tate & Ruedi Aebersold., A repository of assays to quantify 10,000 human proteins by SWATH-MS., Scientific Data 1 (Nature) Article number: 140031 (2014).
• 2014
  Siegel TN, Hon CC, Zhang Q, Lopez-Rubio JJ, Scheidig-Benatar C, Martins RM, Sismeiro O, Coppée JY, Scherf A, Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum, BMC Genomics 2014;15:150.
• 2014
  Savin C, Martin L, Bouchier C, Filali S, Chenau J, Zhou Z, Becher F, Fukushima H, Thomson NR, Scholz HC, Carniel E, The Yersinia pseudotuberculosis complex: characterization and delineation of a new species, Yersinia wautersii, Int. J. Med. Microbiol. 2014 May;304(3-4):452-63.
• 2014
  Val ME, Kennedy SP, Soler-Bistué AJ, Barbe V, Bouchier C, Ducos-Galand M, Skovgaard O, Mazel D, Fuse or die: how to survive the loss of Dam in Vibrio cholerae, Mol. Microbiol. 2014 Feb;91(4):665-78.
• 2014
  Mozzetta C, Pontis J, Fritsch L, Robin P, Portoso M, Proux C, Margueron R, Ait-Si-Ali S, The histone H3 lysine 9 methyltransferases G9a and GLP regulate polycomb repressive complex 2-mediated gene silencing, Mol. Cell 2014 Jan;53(2):277-89.
• 2014
  Patin E, Siddle KJ, Laval G, Quach H, Harmant C, Becker N, Froment A, Régnault B, Lemée L, Gravel S, Hombert JM, Van der Veen L, Dominy NJ, Perry GH, Barreiro LB, Verdu P, Heyer E, Quintana-Murci L, The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists, Nat Commun 2014;5:3163.
• 2013
  Thibeaux R, Weber C, Hon CC, Dillies MA, Avé P, Coppée JY, Labruyère E, Guillén N, Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon, PLoS Pathog. 2013;9(12):e1003824.
• 2013
  Ariey F, Witkowski B, Amaratunga C, Beghain J, Langlois AC, Khim N, Kim S, Duru V, Bouchier C, Ma L, Lim P, Leang R, Duong S, Sreng S, Suon S, Chuor CM, Bout DM, Ménard S, Rogers WO, Genton B, Fandeur T, Miotto O, Ringwald P, Le Bras J, Berry A, Barale JC, Fairhurst RM, Benoit-Vical F, Mercereau-Puijalon O, Ménard D, A molecular marker of artemisinin-resistant Plasmodium falciparum malaria, Nature 2014 Jan;505(7481):50-5.
• 2013
  Archambaud C, Sismeiro O, Toedling J, Soubigou G, Bécavin C, Lechat P, Lebreton A, Ciaudo C, Cossart P, The intestinal microbiota interferes with the microRNA response upon oral Listeria infection, MBio 2013;4(6):e00707-13.
• 2013
  Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P, Statistical approach to protein quantification, Mol. Cell Proteomics 2014 Feb;13(2):666-77.
• 2013
  Rabhi I, Rabhi S, Ben-Othman R, Aniba MR, , Trentin B, Piquemal D, Regnault B, Guizani-Tabbane L, Comparative analysis of resistant and susceptible macrophage gene expression response to Leishmania major parasite, BMC Genomics 2013;14:723.
• 2013
  Tordjman S, Najjar I, Bellissant E, Anderson GM, Barburoth M, Cohen D, Jaafari N, Schischmanoff O, Fagard R, Lagdas E, Kermarrec S, Ribardiere S, Botbol M, Fougerou C, Bronsard G, Vernay-Leconte J, Advances in the research of melatonin in autism spectrum disorders: literature review and new perspectives, Int J Mol Sci 2013 Oct;14(10):20508-42.
• 2013
  Audrain B, Ferrières L, Zairi A, Soubigou G, Dobson C, Coppée JY, Beloin C, Ghigo JM, Induction of the Cpx envelope stress pathway contributes to Escherichia coli tolerance to antimicrobial peptides, Appl. Environ. Microbiol. 2013 Dec;79(24):7770-9.
• 2013
  Lemaire J, Mkannez G, Guerfali FZ, Gustin C, Attia H, Sghaier RM, , Dellagi K, Laouini D, Renard P, MicroRNA expression profile in human macrophages in response to Leishmania major infection, PLoS Negl Trop Dis 2013;7(10):e2478.
• 2013
  Bouvet P, Ruimy R, Bouchier C, Faucher N, Mazuet C, Popoff MR, An atypical Clostridium strain related to the Clostridium botulinum group III strain isolated from a human blood culture, J. Clin. Microbiol. 2014 Jan;52(1):339-43.
• 2013
  Pawlik A, Garnier G, Orgeur M, Tong P, Lohan A, Le Chevalier F, Sapriel G, Roux AL, Conlon K, Honoré N, Dillies MA, Ma L, Bouchier C, Coppée JY, Gaillard JL, Gordon SV, Loftus B, Brosch R, Herrmann JL, Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus, Mol. Microbiol. 2013 Nov;90(3):612-29.
• 2013
  Gabaldón T, Martin T, Marcet-Houben M, Durrens P, Bolotin-Fukuhara M, Lespinet O, Arnaise S, Boisnard S, Aguileta G, Atanasova R, Bouchier C, Couloux A, Creno S, Almeida Cruz J, Devillers H, Enache-Angoulvant A, Guitard J, Jaouen L, Ma L, Marck C, Neuvéglise C, Pelletier E, Pinard A, Poulain J, Recoquillay J, Westhof E, Wincker P, Dujon B, Hennequin C, Fairhead C, Comparative genomics of emerging pathogens in the Candida glabrata clade, BMC Genomics 2013;14:623.
• 2013
  Palha N, Guivel-Benhassine F, Briolat V, Lutfalla G, Sourisseau M, Ellett F, Wang CH, Lieschke GJ, Herbomel P, Schwartz O, Levraud JP, , Real-time whole-body visualization of Chikungunya Virus infection and host interferon response in zebrafish., PLoS Pathog. 2013 ; 9(9): e1003619.
• 2013
  Cousin S, Clermont D, Creno S, Ma L, Loux V, Bizet C, Bouchier C, Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T, Genome Announc 2013 Aug;1(4).
• 2013
  Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C, Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine, Genome Announc 2013 Aug;1(4).
• 2013
  Cousin S, Loux V, Ma L, Creno S, Clermont D, Bizet C, Bouchier C, Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively, Genome Announc 2013 Aug;1(4).
• 2013
  Falentin H, Cousin S, Clermont D, Creno S, Ma L, Chuat V, Loux V, Rüdiger P, Bizet C, Bouchier C, Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin, Genome Announc 2013 Aug;1(4).
• 2013
  Eskandarian HA, Impens F, Nahori MA, Soubigou G, Coppée JY, Cossart P, Hamon MA, A role for SIRT2-dependent histone H3K18 deacetylation in bacterial infection, Science 2013 Aug;341(6145):1238858.
• 2013
  Angebault C, Djossou F, Abélanet S, Permal E, Ben Soltana M, Diancourt L, Bouchier C, Woerther PL, Catzeflis F, Andremont A, d'Enfert C, Bougnoux ME, Candida albicans is not always the preferential yeast colonizing humans: a study in Wayampi Amerindians, J. Infect. Dis. 2013 Nov;208(10):1705-16.
• 2013
  Quax TE, Voet M, Sismeiro O, Dillies MA, Jagla B, Coppée JY, Sezonov G, Forterre P, van der Oost J, Lavigne R, Prangishvili D, Massive activation of archaeal defense genes during viral infection, J. Virol. 2013 Aug;87(15):8419-28.
• 2013
  Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, Sismeiro O, Semenova E, Severinov K, Le Bouguenec C, Coppée JY, Dupuy B, Martin-Verstraete I, Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile, PLoS Genet. 2013 May;9(5):e1003493.
• 2013
  Quereda JJ, Pucciarelli MG, Botello-Morte L, Calvo E, Carvalho F, Bouchier C, Vieira A, Mariscotti JF, Chakraborty T, Cossart P, Hain T, Cabanes D, García-Del Portillo F, Occurrence of mutations impairing sigma factor B (SigB) function upon inactivation of Listeria monocytogenes genes encoding surface proteins, Microbiology (Reading, Engl.) 2013 Jul;159(Pt 7):1328-39.
• 2013
  Matsuki T, Pédron T, Regnault B, Mulet C, Hara T, Sansonetti PJ, Epithelial cell proliferation arrest induced by lactate and acetate from Lactobacillus casei and Bifidobacterium breve, PLoS ONE 2013;8(4):e63053.
• 2013
  Joffret ML, Bouchier C, Grandadam M, Zeller H, Maufrais C, Bourhy H, Despres P, Delpeyroux F, Dacheux L, Genomic characterization of Sebokele virus 1 (SEBV1) reveals a new candidate species among the genus Parechovirus, J. Gen. Virol. 2013 Jul;94(Pt 7):1547-53.
• 2013
  Rosinski-Chupin I, Sauvage E, Mairey B, Mangenot S, Ma L, Da Cunha V, Rusniok C, Bouchier C, Barbe V, Glaser P, Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage, BMC Genomics 2013;14:252.
• 2013
  Komarova AV, Combredet C, Sismeiro O, Dillies MA, Jagla B, Sanchez David RY, Vabret N, Coppée JY, Vidalain PO, Tangy F, Identification of RNA partners of viral proteins in infected cells, RNA Biol 2013 Jun;10(6):944-56.
• 2013
  Clavaud C, Jourdain R, Bar-Hen A, Tichit M, Bouchier C, Pouradier F, El Rawadi C, Guillot J, Ménard-Szczebara F, Breton L, Latgé JP, Mouyna I, Dandruff is associated with disequilibrium in the proportion of the major bacterial and fungal populations colonizing the scalp, PLoS ONE 2013;8(3):e58203.
• 2013
  Guérillot R, Da Cunha V, Sauvage E, Bouchier C, Glaser P, Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading, J. Bacteriol. 2013 May;195(9):1979-90.
• 2013
  Savin C, Frangeul L, Ma L, Bouchier C, Moszer I, Carniel E, Draft Genome Sequence of a Clinical Strain of Yersinia enterocolitica (IP10393) of Bioserotype 4/O:3 from France, Genome Announc 2013 Jan;1(1).
• 2013
  Casetti L, Martin-Lannerée S, Najjar I, Plo I, Augé S, Roy L, Chomel JC, Lauret E, Turhan AG, Dusanter-Fourt I, Differential contributions of STAT5A and STAT5B to stress protection and tyrosine kinase inhibitor resistance of chronic myeloid leukemia stem/progenitor cells, Cancer Res. 2013 Apr;73(7):2052-8.
• 2013
  Supply P, Marceau M, Mangenot S, Roche D, Rouanet C, Khanna V, Majlessi L, Criscuolo A, Tap J, Pawlik A, Fiette L, Orgeur M, Fabre M, Parmentier C, Frigui W, Simeone R, Boritsch EC, Debrie AS, Willery E, Walker D, Quail MA, Ma L, Bouchier C, Salvignol G, Sayes F, Cascioferro A, Seemann T, Barbe V, Locht C, Gutierrez MC, Leclerc C, Bentley SD, Stinear TP, Brisse S, Médigue C, Parkhill J, Cruveiller S, Brosch R, Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis, Nat. Genet. 2013 Feb;45(2):172-9.
• 2013
  Bernier SP, Lebeaux D, DeFrancesco AS, Valomon A, Soubigou G, Coppée JY, Ghigo JM, Beloin C, Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin, PLoS Genet. 2013;9(1):e1003144.
• 2013
  Andres J, Arsène-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppée JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Médigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramírez-Bahena MH, Schenowitz C, Sismeiro O, Vallenet D, Santini JM, Bertin PN, Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26, Genome Biol Evol 2013;5(5):934-53.
• 2012
  Hon CC, Weber C, Sismeiro O, Proux C, Koutero M, Deloger M, Das S, Agrahari M, Dillies MA, Jagla B, Coppee JY, Bhattacharya A, Guillen N, Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica, Nucleic Acids Res. 2013 Feb;41(3):1936-52.
• 2012
  Giraud E, Lecoeur H, Soubigou G, Coppée JY, Milon G, Prina E, Lang T, Distinct transcriptional signatures of bone marrow-derived C57BL/6 and DBA/2 dendritic leucocytes hosting live Leishmania amazonensis amastigotes, PLoS Negl Trop Dis 2012;6(12):e1980.
• 2012
  Andriantsoanirina V, Khim N, Ratsimbasoa A, Witkowski B, Benedet C, Canier L, Bouchier C, Tichit M, Durand R, Ménard D, Plasmodium falciparum Na+/H+ exchanger (pfnhe-1) genetic polymorphism in Indian Ocean malaria-endemic areas, Am. J. Trop. Med. Hyg. 2013 Jan;88(1):37-42.
• 2012
  Léger P, Lara E, Jagla B, Sismeiro O, Mansuroglu Z, Coppée JY, Bonnefoy E, Bouloy M, Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells, J. Virol. 2013 Feb;87(3):1631-48.
• 2012
  Cousin S, Ma L, Creno S, Clermont D, Loux V, Bizet C, Bouchier C, Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop, J. Bacteriol. 2012 Nov;194(21):5973.
• 2012
  Rabhi I, Rabhi S, Ben-Othman R, Rasche A, Daskalaki A, Trentin B, Piquemal D, Regnault B, Descoteaux A, Guizani-Tabbane L, , Transcriptomic signature of Leishmania infected mice macrophages: a metabolic point of view, PLoS Negl Trop Dis 2012;6(8):e1763.
• 2012
  Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée JY, Le Crom S, Prasad R, Devaux F, RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans, BMC Genomics 2012;13:396.
• 2012
  Martinez-Jéhanne V, Pichon C, du Merle L, Poupel O, Cayet N, Bouchier C, Le Bouguénec C, Role of the vpe carbohydrate permease in Escherichia coli urovirulence and fitness in vivo, Infect. Immun. 2012 Aug;80(8):2655-66.
• 2012
  Jourdren L, Bernard M, Dillies MA, Le Crom S, Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses, Bioinformatics 2012 Jun;28(11):1542-3.
• 2012
  Sahr T, Rusniok C, Dervins-Ravault D, Sismeiro O, Coppee JY, Buchrieser C, Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence, RNA Biol 2012 Apr;9(4):503-19.
• 2012
  Vieira J, Jones AR, Danon A, Sakuma M, Hoang N, Robles D, Tait S, Heyes DJ, Picot M, Yoshii T, Helfrich-Förster C, Soubigou G, Coppee JY, Klarsfeld A, Rouyer F, Scrutton NS, Ahmad M, Human cryptochrome-1 confers light independent biological activity in transgenic Drosophila correlated with flavin radical stability, PLoS ONE 2012;7(3):e31867.
• 2012
  Rosenfeld N, Bouchier C, Courvalin P, Périchon B, Expression of the resistance-nodulation-cell division pump AdeIJK in Acinetobacter baumannii is regulated by AdeN, a TetR-type regulator, Antimicrob. Agents Chemother. 2012 May;56(5):2504-10.
• 2012
  Gayraud-Morel B, Chrétien F, Jory A, Sambasivan R, Negroni E, Flamant P, Soubigou G, Coppée JY, Di Santo J, Cumano A, Mouly V, Tajbakhsh S, Myf5 haploinsufficiency reveals distinct cell fate potentials for adult skeletal muscle stem cells, J. Cell. Sci. 2012 Apr;125(Pt 7):1738-49.
• 2012
  Santi-Rocca J, Smith S, Weber C, Pineda E, Hon CC, Saavedra E, Olivos-García A, Rousseau S, Dillies MA, Coppée JY, Guillén N, Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide, PLoS ONE 2012;7(2):e31777.
• 2012
  Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Spröer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C, , Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov., Int J Syst Evol Microbiol 2013 Jan; 63(Pt 1): 53-59.
• 2012
  Leblond CS, Heinrich J, Delorme R, Proepper C, Betancur C, Huguet G, Konyukh M, Chaste P, Ey E, Rastam M, Anckarsäter H, Nygren G, Gillberg IC, Melke J, Toro R, Regnault B, Fauchereau F, Mercati O, Lemière N, Skuse D, Poot M, Holt R, Monaco AP, Järvelä I, Kantojärvi K, Vanhala R, Curran S, Collier DA, Bolton P, Chiocchetti A, Klauck SM, Poustka F, Freitag CM, Waltes R, Kopp M, Duketis E, Bacchelli E, Minopoli F, Ruta L, Battaglia A, Mazzone L, Maestrini E, Sequeira AF, Oliveira B, Vicente A, Oliveira G, Pinto D, Scherer SW, Zelenika D, Delepine M, Lathrop M, Bonneau D, Guinchat V, Devillard F, Assouline B, Mouren MC, Leboyer M, Gillberg C, Boeckers TM, Bourgeron T, Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of autism spectrum disorders, PLoS Genet. 2012 Feb;8(2):e1002521.
• 2012
  Green B, Bouchier C, Fairhead C, Craig NL, Cormack BP, Insertion site preference of Mu, Tn5, and Tn7 transposons, Mob DNA 2012;3(1):3.
• 2012
  Legrand E, Yrinesi J, Ekala MT, Péneau J, Volney B, Berger F, Bouchier C, Bertani S, Musset L, Meynard JB, Mercereau-Puijalon O, Discordant temporal evolution of Pfcrt and Pfmdr1 genotypes and Plasmodium falciparum in vitro drug susceptibility to 4-aminoquinolines after drug policy change in French Guiana, Antimicrob. Agents Chemother. 2012 Mar;56(3):1382-9.
• 2011
  Jouneau A, Ciaudo C, Sismeiro O, Brochard V, Jouneau L, Vandormael-Pournin S, Coppée JY, Zhou Q, Heard E, Antoniewski C, Cohen-Tannoudji M, Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles, RNA 2012 Feb;18(2):253-64.
• 2011
  Manry J, Laval G, Patin E, Fornarino S, Itan Y, Fumagalli M, Sironi M, Tichit M, Bouchier C, Casanova JL, Barreiro LB, Quintana-Murci L, Evolutionary genetic dissection of human interferons, J. Exp. Med. 2011 Dec;208(13):2747-59.
• 2011
  Kim S, Nguon C, Guillard B, Duong S, Chy S, Sum S, Nhem S, Bouchier C, Tichit M, Christophel E, Taylor WR, Baird JK, Menard D, Performance of the CareStart™ G6PD deficiency screening test, a point-of-care diagnostic for primaquine therapy screening, PLoS ONE 2011;6(12):e28357.
• 2011
  Khim N, Kim S, Bouchier C, Tichit M, Ariey F, Fandeur T, Chim P, Ke S, Sum S, Man S, Ratsimbasoa A, Durand R, Ménard D, Reduced impact of pyrimethamine drug pressure on Plasmodium malariae dihydrofolate reductase gene, Antimicrob. Agents Chemother. 2012 Feb;56(2):863-8.
• 2011
  Zhang Q, Huang Y, Zhang Y, Fang X, Claes A, Duchateau M, Namane A, Lopez-Rubio JJ, Pan W, Scherf A, A critical role of perinuclear filamentous actin in spatial repositioning and mutually exclusive expression of virulence genes in malaria parasites, Cell Host Microbe 2011 Nov;10(5):451-63.
• 2011
  Khim N, Siv S, Kim S, Mueller T, Fleischmann E, Singh B, Divis PC, Steenkeste N, Duval L, Bouchier C, Duong S, Ariey F, Menard D, Plasmodium knowlesi infection in humans, Cambodia, 2007-2010, Emerging Infect. Dis. 2011 Oct;17(10):1900-2.
• 2011
  Martini E, Borde V, Legendre M, Audic S, Regnault B, Soubigou G, Dujon B, Llorente B, Genome-wide analysis of heteroduplex DNA in mismatch repair-deficient yeast cells reveals novel properties of meiotic recombination pathways, PLoS Genet. 2011 Sep;7(9):e1002305.
• 2011
  Andriantsoanirina V, Durand R, Pradines B, Baret E, Bouchier C, Ratsimbasoa A, Ménard D, In vitro susceptibility to pyrimethamine of DHFR I164L single mutant Plasmodium falciparum, Malar. J. 2011 Sep;10:283.
• 2011
  Jagla B, Wiswedel B, Coppée JY, Extending KNIME for next-generation sequencing data analysis, Bioinformatics 2011 Oct;27(20):2907-9.
• 2011
  Polge C, Heng AE, Jarzaguet M, Ventadour S, Claustre A, Combaret L, Béchet D, Matondo M, Uttenweiler-Joseph S, Monsarrat B, Attaix D, Taillandier D, Muscle actin is polyubiquitinylated in vitro and in vivo and targeted for breakdown by the E3 ligase MuRF1, FASEB J. 2011 Nov;25(11):3790-802.
• 2011
  Souissi I, Najjar I, Ah-Koon L, Schischmanoff PO, Lesage D, Le Coquil S, Roger C, Dusanter-Fourt I, Varin-Blank N, Cao A, Metelev V, Baran-Marszak F, Fagard R, A STAT3-decoy oligonucleotide induces cell death in a human colorectal carcinoma cell line by blocking nuclear transfer of STAT3 and STAT3-bound NF-κB, BMC Cell Biol. 2011 Apr;12:14.
• 2011
  Deplaine G, Lavazec C, Bischoff E, Natalang O, Perrot S, Guillotte-Blisnick M, Coppée JY, Pradines B, Mercereau-Puijalon O, David PH, Artesunate tolerance in transgenic Plasmodium falciparum parasites overexpressing a tryptophan-rich protein, Antimicrob. Agents Chemother. 2011 Jun;55(6):2576-84.
• 2011
  Manry J, Laval G, Patin E, Fornarino S, Tichit M, Bouchier C, Barreiro LB, Quintana-Murci L, Evolutionary genetics evidence of an essential, nonredundant role of the IFN-γ pathway in protective immunity, Hum. Mutat. 2011 Jun;32(6):633-42.
• 2011
  Cousin S, Gulat-Okalla ML, Motreff L, Gouyette C, Bouchier C, Clermont D, Bizet C, , Lactobacillus gigeriorum sp. nov., isolated from chicken crop., Int J Syst Evol Microbiol 2012 Feb; 62(Pt 2): 330-334.
• 2011
  Selevsek N, Matondo M, Sanchez Carbayo M, Aebersold R, Domon B, Systematic quantification of peptides/proteins in urine using selected reaction monitoring, Proteomics 2011 Mar;11(6):1135-47.
• 2011
  Court M, Selevsek N, Matondo M, Allory Y, Garin J, Masselon CD, Domon B, Toward a standardized urine proteome analysis methodology, Proteomics 2011 Mar;11(6):1160-71.
• 2011
  Ludwig M, Palha N, Torhy C, Briolat V, Colucci-Guyon E, Brémont M, Herbomel P, Boudinot P, Levraud JP, , Whole-body analysis of a viral infection: vascular endothelium is a primary target of infectious hematopoietic necrosis virus in zebrafish larvae., PLoS Pathog. 2011 Feb; 7(2): e1001269.
• 2011
  Lebreton A, Lakisic G, Job V, Fritsch L, Tham TN, Camejo A, Matteï PJ, Regnault B, Nahori MA, Cabanes D, Gautreau A, Ait-Si-Ali S, Dessen A, Cossart P, Bierne H, A bacterial protein targets the BAHD1 chromatin complex to stimulate type III interferon response, Science 2011 Mar;331(6022):1319-21.
• 2011
  Dittami SM, Proux C, Rousvoal S, Peters AF, Cock JM, Coppée JY, Boyen C, Tonon T, Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae), BMC Mol. Biol. 2011;12:2.
• 2011
  Roux AL, Ray A, Pawlik A, Medjahed H, Etienne G, Rottman M, Catherinot E, Coppée JY, Chaoui K, Monsarrat B, Toubert A, Daffé M, Puzo G, Gaillard JL, Brosch R, Dulphy N, Nigou J, Herrmann JL, Overexpression of proinflammatory TLR-2-signalling lipoproteins in hypervirulent mycobacterial variants, Cell. Microbiol. 2011 May;13(5):692-704.
• 2010
  Cleiss-Arnold J, Koechler S, Proux C, Fardeau ML, Dillies MA, Coppee JY, Arsène-Ploetze F, Bertin PN, Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans, BMC Genomics 2010;11:709.
• 2010
  Forquin MP, Hébert A, Roux A, Aubert J, Proux C, Heilier JF, Landaud S, Junot C, Bonnarme P, Martin-Verstraete I, Global regulation of the response to sulfur availability in the cheese-related bacterium Brevibacterium aurantiacum, Appl. Environ. Microbiol. 2011 Feb;77(4):1449-59.
• 2010
  Lagha M, Sato T, Regnault B, Cumano A, Zuniga A, Licht J, Relaix F, Buckingham M, Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo, BMC Genomics 2010;11:696.
• 2010
  Andriantsoanirina V, Ratsimbasoa A, Bouchier C, Tichit M, Jahevitra M, Rabearimanana S, Raherinjafy R, Mercereau-Puijalon O, Durand R, Ménard D, Chloroquine clinical failures in P. falciparum malaria are associated with mutant Pfmdr-1, not Pfcrt in Madagascar, PLoS ONE 2010 Oct;5(10):e13281.
• 2010
  Thiberge JM, Boursaux-Eude C, Lehours P, Dillies MA, Creno S, Coppée JY, Rouy Z, Lajus A, Ma L, Burucoa C, Ruskoné-Foumestraux A, Courillon-Mallet A, De Reuse H, Boneca IG, Lamarque D, Mégraud F, Delchier JC, Médigue C, Bouchier C, Labigne A, Raymond J, From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma, BMC Genomics 2010;11:368.
• 2010
  Andriantsoanirina V, Ménard D, Rabearimanana S, Hubert V, Bouchier C, Tichit M, Bras JL, Durand R, Association of microsatellite variations of Plasmodium falciparum Na+/H+ exchanger (Pfnhe-1) gene with reduced in vitro susceptibility to quinine: lack of confirmation in clinical isolates from Africa, Am. J. Trop. Med. Hyg. 2010 May;82(5):782-7.
• 2010
  Bob NS, Diop BM, Renaud F, Marrama L, Durand P, Tall A, Ka B, Ekala MT, Bouchier C, Mercereau-Puijalon O, Jambou R, Parasite polymorphism and severe malaria in Dakar (Senegal): a West African urban area, PLoS ONE 2010;5(3):e9817.
• 2010
  Andriantsoanirina V, Bouchier C, Tichit M, Jahevitra M, Rabearimanana S, Randrianjafy R, Ratsimbasoa A, Mercereau-Puijalon O, Durand R, Ménard D, Origins of the recent emergence of Plasmodium falciparum pyrimethamine resistance alleles in Madagascar, Antimicrob. Agents Chemother. 2010 Jun;54(6):2323-9.
• 2010
  Ménard D, Barnadas C, Bouchier C, Henry-Halldin C, Gray LR, Ratsimbasoa A, Thonier V, Carod JF, Domarle O, Colin Y, Bertrand O, Picot J, King CL, Grimberg BT, Mercereau-Puijalon O, Zimmerman PA, Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people, Proc. Natl. Acad. Sci. U.S.A. 2010 Mar;107(13):5967-71.
• 2010
  Najjar I, Deglesne PA, Schischmanoff PO, Fabre EE, Boisson-Dupuis S, Nimmerjahn F, Bornkamm GW, Dusanter-Fourt I, Fagard R, STAT1-dependent IgG cell-surface expression in a human B cell line derived from a STAT1-deficient patient, J. Leukoc. Biol. 2010 Jun;87(6):1145-52.
• 2010
  Lim P, Wongsrichanalai C, Chim P, Khim N, Kim S, Chy S, Sem R, Nhem S, Yi P, Duong S, Bouth DM, Genton B, Beck HP, Gobert JG, Rogers WO, Coppee JY, Fandeur T, Mercereau-Puijalon O, Ringwald P, Le Bras J, Ariey F, Decreased in vitro susceptibility of Plasmodium falciparum isolates to artesunate, mefloquine, chloroquine, and quinine in Cambodia from 2001 to 2007, Antimicrob. Agents Chemother. 2010 May;54(5):2135-42.
• 2010
  Arsène-Ploetze F, Koechler S, Marchal M, Coppée JY, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan CG, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin PN, Structure, function, and evolution of the Thiomonas spp. genome, PLoS Genet. 2010 Feb;6(2):e1000859.
• 2010
  Jambou R, Martinelli A, Pinto J, Gribaldo S, Legrand E, Niang M, Kim N, Pharath L, Volnay B, Ekala MT, Bouchier C, Fandeur T, Berzosa P, Benito A, Ferreira ID, Ferreira C, Vieira PP, Alecrim Md, Mercereau-Puijalon O, Cravo P, Geographic structuring of the Plasmodium falciparum sarco(endo)plasmic reticulum Ca2+ ATPase (PfSERCA) gene diversity, PLoS ONE 2010;5(2):e9424.
• 2010
  Cazalet C, Gomez-Valero L, Rusniok C, Lomma M, Dervins-Ravault D, Newton HJ, Sansom FM, Jarraud S, Zidane N, Ma L, Bouchier C, Etienne J, Hartland EL, Buchrieser C, Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires’ disease, PLoS Genet. 2010 Feb;6(2):e1000851.
• 2010
  Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppée JY, Bertin PN, Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans, BMC Microbiol. 2010;10:53.
• 2010
  Najjar I, Fagard R, STAT1 and pathogens, not a friendly relationship, Biochimie 2010 May;92(5):425-44.
• 2010
  Rusniok C, Couvé E, Da Cunha V, El Gana R, Zidane N, Bouchier C, Poyart C, Leclercq R, Trieu-Cuot P, Glaser P, Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis, J. Bacteriol. 2010 Apr;192(8):2266-76.
• 2009
  Fagegaltier D, Bougé AL, Berry B, Poisot E, Sismeiro O, Coppée JY, Théodore L, Voinnet O, Antoniewski C, The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila, Proc. Natl. Acad. Sci. U.S.A. 2009 Dec;106(50):21258-63.
• 2009
  Pallafacchina G, François S, Regnault B, Czarny B, Dive V, Cumano A, Montarras D, Buckingham M, An adult tissue-specific stem cell in its niche: a gene profiling analysis of in vivo quiescent and activated muscle satellite cells, Stem Cell Res 2010 Mar;4(2):77-91.
• 2009
  Noranate N, Prugnolle F, Jouin H, Tall A, Marrama L, Sokhna C, Ekala MT, Guillotte M, Bischoff E, Bouchier C, Patarapotikul J, Ohashi J, Trape JF, Rogier C, Mercereau-Puijalon O, Population diversity and antibody selective pressure to Plasmodium falciparum MSP1 block2 locus in an African malaria-endemic setting, BMC Microbiol. 2009;9:219.
• 2009
  Steenkeste N, Dillies MA, Khim N, Sismeiro O, Chy S, Lim P, Crameri A, Bouchier C, Mercereau-Puijalon O, Beck HP, Imwong M, Dondorp AM, Socheat D, Rogier C, Coppée JY, Ariey F, FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance, Malar. J. 2009;8:229.
• 2009
  Matondo M, Bousquet-Dubouch MP, Gallay N, Uttenweiler-Joseph S, Recher C, Payrastre B, Manenti S, Monsarrat B, Burlet-Schiltz O, Proteasome inhibitor-induced apoptosis in acute myeloid leukemia: a correlation with the proteasome status, Leuk. Res. 2010 Apr;34(4):498-506.
• 2009
  Regnault B, Osorio Y Fortea J, Miao D, Eisenbarth G, Melanitou E, Early over expression of messenger RNA for multiple genes, including insulin, in the Pancreatic Lymph Nodes of NOD mice is associated with Islet Autoimmunity, BMC Med Genomics 2009;2:63.
• 2009
  Andriantsoanirina V, Ratsimbasoa A, Bouchier C, Jahevitra M, Rabearimanana S, Radrianjafy R, Andrianaranjaka V, Randriantsoa T, Rason MA, Tichit M, Rabarijaona LP, Mercereau-Puijalon O, Durand R, Ménard D, Plasmodium falciparum drug resistance in Madagascar: facing the spread of unusual pfdhfr and pfmdr-1 haplotypes and the decrease of dihydroartemisinin susceptibility, Antimicrob. Agents Chemother. 2009 Nov;53(11):4588-97.
• 2009
  van Schaik W, Château A, Dillies MA, Coppée JY, Sonenshein AL, Fouet A, The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence, Infect. Immun. 2009 Oct;77(10):4437-45.
• 2009
  Bierne H, Tham TN, Batsche E, Dumay A, Leguillou M, Kernéis-Golsteyn S, Regnault B, Seeler JS, Muchardt C, Feunteun J, Cossart P, Human BAHD1 promotes heterochromatic gene silencing, Proc. Natl. Acad. Sci. U.S.A. 2009 Aug;106(33):13826-31.
• 2009
  Forquin MP, Duvergey H, Proux C, Loux V, Mounier J, Landaud S, Coppée JY, Gibrat JF, Bonnarme P, Martin-Verstraete I, Vallaeys T, Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses, Appl. Environ. Microbiol. 2009 Oct;75(19):6406-9.
• 2009
  Paragas N, Nickolas TL, Wyatt C, Forster CS, Sise M, Morgello S, Jagla B, Buchen C, Stella P, Sanna-Cherchi S, Carnevali ML, Mattei S, Bovino A, Argentiero L, Magnano A, Devarajan P, Schmidt-Ott KM, Allegri L, Klotman P, D'Agati V, Gharavi AG, Barasch J, Urinary NGAL marks cystic disease in HIV-associated nephropathy, J. Am. Soc. Nephrol. 2009 Aug;20(8):1687-92.
• 2009
  Ivanova EP, Christen R, Bizet C, Clermont D, Motreff L, Bouchier C, Zhukova NV, Crawford RJ, Kiprianova EA, , Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants., Int J Syst Evol Microbiol 2009 Oct; 59(Pt 10): 2476-81.
• 2009
  Barreiro LB, Ben-Ali M, Quach H, Laval G, Patin E, Pickrell JK, Bouchier C, Tichit M, Neyrolles O, Gicquel B, Kidd JR, Kidd KK, Alcaïs A, Ragimbeau J, Pellegrini S, Abel L, Casanova JL, Quintana-Murci L, Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense, PLoS Genet. 2009 Jul;5(7):e1000562.
• 2009
  Bouchier C, Ma L, Créno S, Dujon B, Fairhead C, Complete mitochondrial genome sequences of three Nakaseomyces species reveal invasion by palindromic GC clusters and considerable size expansion, FEMS Yeast Res. 2009 Dec;9(8):1283-92.
• 2009
  Payen C, Fischer G, Marck C, Proux C, Sherman DJ, Coppée JY, Johnston M, Dujon B, Neuvéglise C, Unusual composition of a yeast chromosome arm is associated with its delayed replication, Genome Res. 2009 Oct;19(10):1710-21.
• 2009
  Barnadas C, Musset L, Legrand E, Tichit M, Briolant S, Fusai T, Rogier C, Bouchier C, Picot S, Ménard D, High prevalence and fixation of Plasmodium vivax dhfr/dhps mutations related to sulfadoxine/pyrimethamine resistance in French Guiana, Am. J. Trop. Med. Hyg. 2009 Jul;81(1):19-22.
• 2009
  Soutourina O, Poupel O, Coppée JY, Danchin A, Msadek T, Martin-Verstraete I, CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation, Mol. Microbiol. 2009 Jul;73(2):194-211.
• 2009
  van Asten L, van der Lubben M, van den Wijngaard C, van Pelt W, Verheij R, Jacobi A, Overduin P, Meijer A, Luijt D, Claas E, Hermans M, Melchers W, Rossen J, Schuurman R, Wolffs P, Boucher C, Bouchier C, Schirm J, Kroes L, Leenders S, Galama J, Peeters M, van Loon A, Stobberingh E, Schutten M, Koopmans M, Strengthening the diagnostic capacity to detect Bio Safety Level 3 organisms in unusual respiratory viral outbreaks, J. Clin. Virol. 2009 Jul;45(3):185-90.
• 2009
  Andriantsoanirina V, Lascombes V, Ratsimbasoa A, Bouchier C, Hoffman J, Tichit M, Rabarijaona LP, Durand R, Ménard D, Rapid detection of point mutations in Plasmodium falciparum genes associated with antimalarial drugs resistance by using High-Resolution Melting analysis, J. Microbiol. Methods 2009 Aug;78(2):165-70.
• 2009
  Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H, Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy M, Vergassola M, Nahori MA, Soubigou G, Régnault B, Coppée JY, Lecuit M, Johansson J, Cossart P, The Listeria transcriptional landscape from saprophytism to virulence, Nature 2009 Jun;459(7249):950-6.
• 2009
  Clermont D, Diard S, Bouchier C, Vivier C, Bimet F, Motreff L, Welker M, Kallow W, Bizet C, Microbacterium binotii sp. nov., isolated from human blood, Int. J. Syst. Evol. Microbiol. 2009 May;59(Pt 5):1016-22.
• 2009
  Le Roux F, Zouine M, Chakroun N, Binesse J, Saulnier D, Bouchier C, Zidane N, Ma L, Rusniok C, Lajus A, Buchrieser C, Médigue C, Polz MF, Mazel D, Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity, Environ. Microbiol. 2009 Aug;11(8):1959-70.
• 2009
  Osorio y Fortéa J, de La Llave E, Regnault B, Coppée JY, Milon G, Lang T, Prina E, Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes, BMC Genomics 2009;10:119.
• 2009
  Ibrahim ML, Steenkeste N, Khim N, Adam HH, Konaté L, Coppée JY, Ariey F, Duchemin JB, Field-based evidence of fast and global increase of Plasmodium falciparum drug-resistance by DNA-microarrays and PCR/RFLP in Niger, Malar. J. 2009;8:32.
• 2009
  Quach H, Barreiro LB, Laval G, Zidane N, Patin E, Kidd KK, Kidd JR, Bouchier C, Veuille M, Antoniewski C, Quintana-Murci L, Signatures of purifying and local positive selection in human miRNAs, Am. J. Hum. Genet. 2009 Mar;84(3):316-27.
• 2009
  Ishida K, Welker M, Christiansen G, Cadel-Six S, Bouchier C, Dittmann E, Hertweck C, Tandeau de Marsac N, Plasticity and evolution of aeruginosin biosynthesis in cyanobacteria, Appl. Environ. Microbiol. 2009 Apr;75(7):2017-26.
• 2009
  Bousquet-Dubouch MP, Baudelet E, Guérin F, Matondo M, Uttenweiler-Joseph S, Burlet-Schiltz O, Monsarrat B, Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins, Mol. Cell Proteomics 2009 May;8(5):1150-64.
• 2009
  Dacheux L, Larrous F, Mailles A, Boisseleau D, Delmas O, Biron C, Bouchier C, Capek I, Muller M, Ilari F, Lefranc T, Raffi F, Goudal M, Bourhy H, European bat Lyssavirus transmission among cats, Europe, Emerging Infect. Dis. 2009 Feb;15(2):280-4.
• 2009
  Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E, Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths, PLoS Genet. 2009 Jan;5(1):e1000344.
• 2009
  Lim P, Alker AP, Khim N, Shah NK, Incardona S, Doung S, Yi P, Bouth DM, Bouchier C, Puijalon OM, Meshnick SR, Wongsrichanalai C, Fandeur T, Le Bras J, Ringwald P, Ariey F, Pfmdr1 copy number and arteminisin derivatives combination therapy failure in falciparum malaria in Cambodia, Malar. J. 2009;8:11.
• 2009
  Ngandjio A, Tejiokem M, Wouafo M, Ndome I, Yonga M, Guenole A, Lemee L, Quilici ML, Fonkoua MC, Antimicrobial resistance and molecular characterization of Vibrio cholerae O1 during the 2004 and 2005 outbreak of cholera in Cameroon, Foodborne Pathog. Dis. 2009 Jan-Feb;6(1):49-56.
• 2008
  Diogo D, Bouchier C, d'Enfert C, Bougnoux ME, Loss of heterozygosity in commensal isolates of the asexual diploid yeast Candida albicans, Fungal Genet. Biol. 2009 Feb;46(2):159-68.
• 2008
  Muller H, Thierry A, Coppée JY, Gouyette C, Hennequin C, Sismeiro O, Talla E, Dujon B, Fairhead C, Genomic polymorphism in the population of Candida glabrata: gene copy-number variation and chromosomal translocations, Fungal Genet. Biol. 2009 Mar;46(3):264-76.
• 2008
  Rosso ML, Chauvaux S, Dessein R, Laurans C, Frangeul L, Lacroix C, Schiavo A, Dillies MA, Foulon J, Coppée JY, Médigue C, Carniel E, Simonet M, Marceau M, , Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression., BMC Microbiol. 2008 Dec; 8(): 211.
• 2008
  Mariette N, Barnadas C, Bouchier C, Tichit M, Ménard D, Country-wide assessment of the genetic polymorphism in Plasmodium falciparum and Plasmodium vivax antigens detected with rapid diagnostic tests for malaria, Malar. J. 2008 Oct;7:219.
• 2008
  Weiss S, Carapito C, Cleiss J, Koechler S, Turlin E, Coppee JY, Heymann M, Kugler V, Stauffert M, Cruveiller S, Médigue C, Van Dorsselaer A, Bertin PN, Arsène-Ploetze F, Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data, Biochimie 2009 Feb;91(2):192-203.
• 2008
  Thierry A, Bouchier C, Dujon B, Richard GF, Megasatellites: a peculiar class of giant minisatellites in genes involved in cell adhesion and pathogenicity in Candida glabrata, Nucleic Acids Res. 2008 Oct;36(18):5970-82.
• 2008
  Barnadas C, Ratsimbasoa A, Tichit M, Bouchier C, Jahevitra M, Picot S, Ménard D, Plasmodium vivax resistance to chloroquine in Madagascar: clinical efficacy and polymorphisms in pvmdr1 and pvcrt-o genes, Antimicrob. Agents Chemother. 2008 Dec;52(12):4233-40.
• 2008
  Lamarre C, Sokol S, Debeaupuis JP, Henry C, Lacroix C, Glaser P, Coppée JY, François JM, Latgé JP, Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia, BMC Genomics 2008;9:417.
• 2008
  Najjar I, Schischmanoff PO, Baran-Marszak F, Deglesne PA, Youlyouz-Marfak I, Pampin M, Feuillard J, Bornkamm GW, Chelbi-Alix MK, Fagard R, Novel function of STAT1beta in B cells: induction of cell death by a mechanism different from that of STAT1alpha, J. Leukoc. Biol. 2008 Dec;84(6):1604-12.
• 2008
  Natalang O, Bischoff E, Deplaine G, Proux C, Dillies MA, Sismeiro O, Guigon G, Bonnefoy S, Patarapotikul J, Mercereau-Puijalon O, Coppée JY, David PH, Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate, BMC Genomics 2008;9:388.
• 2008
  Niang M, Marrama L, Ekala MT, Alioune G, Tall A, Ndiaye JL, Sarr D, Dangou JM, Lehesran JY, Bouchier C, Mercereau-Puijalon O, Jambou R, Accumulation of CVIET Pfcrt allele of Plasmodium falciparum in placenta of pregnant women living in an urban area of Dakar, Senegal, J. Antimicrob. Chemother. 2008 Nov;62(5):921-8.
• 2008
  Achour I, Cavelier P, Tichit M, Bouchier C, Lafaye P, Rougeon F, Tetrameric and homodimeric camelid IgGs originate from the same IgH locus, J. Immunol. 2008 Aug;181(3):2001-9.
• 2008
  Coppée JY, Do DNA microarrays have their future behind them?, Microbes Infect. 2008 Jul;10(9):1067-71.
• 2008
  Cadel-Six S, Dauga C, Castets AM, Rippka R, Bouchier C, Tandeau de Marsac N, Welker M, Halogenase genes in nonribosomal peptide synthetase gene clusters of Microcystis (cyanobacteria): sporadic distribution and evolution, Mol. Biol. Evol. 2008 Sep;25(9):2031-41.
• 2008
  Ménard D, Andriantsoanirina V, Jahevitra M, Barnadas C, Tichit M, Bouchier C, Hopkins Sibley C, Dihydrofolate reductase I164L mutation in Plasmodium falciparum, Madagascar, Emerging Infect. Dis. 2008 Jul;14(7):1166-7.
• 2008
  Vivas JR, Regnault B, Michel V, Bussière FI, Avé P, Huerre M, Labigne A, D' Elios MM, Touati E, Interferon gamma-signature transcript profiling and IL-23 upregulation in response to Helicobacter pylori infection, Int J Immunopathol Pharmacol 2008 Jul-Sep;21(3):515-26.
• 2008
  Frangeul L, Quillardet P, Castets AM, Humbert JF, Matthijs HC, Cortez D, Tolonen A, Zhang CC, Gribaldo S, Kehr JC, Zilliges Y, Ziemert N, Becker S, Talla E, Latifi A, Billault A, Lepelletier A, Dittmann E, Bouchier C, de Marsac NT, Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium, BMC Genomics 2008;9:274.
• 2008
  Delmas O, Holmes EC, Talbi C, Larrous F, Dacheux L, Bouchier C, Bourhy H, Genomic diversity and evolution of the lyssaviruses, PLoS ONE 2008 Apr;3(4):e2057.
• 2008
  Sperandio B, Regnault B, Guo J, Zhang Z, Stanley SL, Sansonetti PJ, Pédron T, Virulent Shigella flexneri subverts the host innate immune response through manipulation of antimicrobial peptide gene expression, J. Exp. Med. 2008 May;205(5):1121-32.
• 2008
  Blazquez S, Guigon G, Weber C, Syan S, Sismeiro O, Coppée JY, Labruyère E, Guillén N, Chemotaxis of Entamoeba histolytica towards the pro-inflammatory cytokine TNF is based on PI3K signalling, cytoskeleton reorganization and the Galactose/N-acetylgalactosamine lectin activity, Cell. Microbiol. 2008 Aug;10(8):1676-86.
• 2008
  Fernandez MI, Regnault B, Mulet C, Tanguy M, Jay P, Sansonetti PJ, Pédron T, Maturation of paneth cells induces the refractory state of newborn mice to Shigella infection, J. Immunol. 2008 Apr;180(7):4924-30.
• 2008
  Osorio Y Fortéa J, Prina E, Lang T, Milon G, Davory C, Coppée JY, Regnault B, AffyGCQC: a web-based interface to detect outlying genechips with extreme studentized deviate tests, J Bioinform Comput Biol 2008 Apr;6(2):317-34.
• 2008
  Labalette C, Nouët Y, Sobczak-Thepot J, Armengol C, Levillayer F, Gendron MC, Renard CA, Regnault B, Chen J, Buendia MA, Wei Y, The LIM-only protein FHL2 regulates cyclin D1 expression and cell proliferation, J. Biol. Chem. 2008 May;283(22):15201-8.
• 2008
  Tuikue Ndam N, Bischoff E, Proux C, Lavstsen T, Salanti A, Guitard J, Nielsen MA, Coppée JY, Gaye A, Theander T, David PH, Deloron P, Plasmodium falciparum transcriptome analysis reveals pregnancy malaria associated gene expression, PLoS ONE 2008;3(3):e1855.
• 2008
  Barnadas C, Tichit M, Bouchier C, Ratsimbasoa A, Randrianasolo L, Raherinjafy R, Jahevitra M, Picot S, Ménard D, Plasmodium vivax dhfr and dhps mutations in isolates from Madagascar and therapeutic response to sulphadoxine-pyrimethamine, Malar. J. 2008 Feb;7:35.
• 2008
  Zilliges Y, Kehr JC, Mikkat S, Bouchier C, de Marsac NT, Börner T, Dittmann E, An extracellular glycoprotein is implicated in cell-cell contacts in the toxic cyanobacterium Microcystis aeruginosa PCC 7806, J. Bacteriol. 2008 Apr;190(8):2871-9.
• 2008
  Picardeau M, Bulach DM, Bouchier C, Zuerner RL, Zidane N, Wilson PJ, Creno S, Kuczek ES, Bommezzadri S, Davis JC, McGrath A, Johnson MJ, Boursaux-Eude C, Seemann T, Rouy Z, Coppel RL, Rood JI, Lajus A, Davies JK, Médigue C, Adler B, Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis, PLoS ONE 2008;3(2):e1607.
• 2008
  Ziemert N, Ishida K, Quillardet P, Bouchier C, Hertweck C, de Marsac NT, Dittmann E, Microcyclamide biosynthesis in two strains of Microcystis aeruginosa: from structure to genes and vice versa, Appl. Environ. Microbiol. 2008 Mar;74(6):1791-7.
• 2008
  Bousquet-Dubouch MP, Uttenweiler-Joseph S, Ducoux-Petit M, Matondo M, Monsarrat B, Burlet-Schiltz O, Purification and proteomic analysis of 20S proteasomes from human cells, Methods Mol. Biol. 2008;432:301-20.
• 2007
  Ekala MT, Khim N, Legrand E, Randrianarivelojosia M, Jambou R, Fandeur T, Menard D, Assi SB, Henry MC, Rogier C, Bouchier C, Mercereau-Puijalon O, Sequence analysis of Plasmodium falciparum cytochrome b in multiple geographic sites, Malar. J. 2007 Dec;6:164.
• 2007
  Siau A, Toure FS, Ouwe-Missi-Oukem-Boyer O, Ciceron L, Mahmoudi N, Vaquero C, Froissard P, Bisvigou U, Bisser S, Coppee JY, Bischoff E, David PH, Mazier D, Whole-transcriptome analysis of Plasmodium falciparum field isolates: identification of new pathogenicity factors, J. Infect. Dis. 2007 Dec;196(11):1603-12.
• 2007
  Bougnoux ME, Pujol C, Diogo D, Bouchier C, Soll DR, d'Enfert C, Mating is rare within as well as between clades of the human pathogen Candida albicans, Fungal Genet. Biol. 2008 Mar;45(3):221-31.
• 2007
  Jacquelin B, Mayau V, Brysbaert G, Regnault B, Diop OM, Arenzana-Seisdedos F, Rogge L, Coppée JY, Barré-Sinoussi F, Benecke A, Müller-Trutwin MC, , Long oligonucleotide microarrays for African green monkey gene expression profile analysis., FASEB J 2007 Oct; 21(12): 3262-71.
• 2007
  Le Guyader D, Redd MJ, Colucci-Guyon E, Murayama E, Kissa K, Briolat V, Mordelet E, Zapata A, Shinomiya H, Herbomel P, , Origins and unconventional behavior of neutrophils in developing zebrafish., Blood 2008 Jan; 111(1): 132-41.
• 2007
  Crameri A, Marfurt J, Mugittu K, Maire N, Regös A, Coppee JY, Sismeiro O, Burki R, Huber E, Laubscher D, Puijalon O, Genton B, Felger I, Beck HP, Rapid microarray-based method for monitoring of all currently known single-nucleotide polymorphisms associated with parasite resistance to antimalaria drugs, J. Clin. Microbiol. 2007 Nov;45(11):3685-91.
• 2007
  Guljamow A, Jenke-Kodama H, Saumweber H, Quillardet P, Frangeul L, Castets AM, Bouchier C, Tandeau de Marsac N, Dittmann E, Horizontal gene transfer of two cytoskeletal elements from a eukaryote to a cyanobacterium, Curr. Biol. 2007 Sep;17(17):R757-9.
• 2007
  Chauvaux S, Rosso ML, Frangeul L, Lacroix C, Labarre L, Schiavo A, Marceau M, Dillies MA, Foulon J, Coppée JY, Médigue C, Simonet M, Carniel E, , Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague., Microbiology (Reading, Engl.) 2007 Sep; 153(Pt 9): 3112-3124.
• 2007
  Schmidt-Ott KM, Masckauchan TN, Chen X, Hirsh BJ, Sarkar A, Yang J, Paragas N, Wallace VA, Dufort D, Pavlidis P, Jagla B, Kitajewski J, Barasch J, beta-catenin/TCF/Lef controls a differentiation-associated transcriptional program in renal epithelial progenitors, Development 2007 Sep;134(17):3177-90.
• 2007
  Santi-Rocca J, Weber C, Guigon G, Sismeiro O, Coppée JY, Guillén N, The lysine- and glutamic acid-rich protein KERP1 plays a role in Entamoeba histolytica liver abscess pathogenesis, Cell. Microbiol. 2008 Jan;10(1):202-17.
• 2007
  Hamon MA, Batsché E, Régnault B, Tham TN, Seveau S, Muchardt C, Cossart P, Histone modifications induced by a family of bacterial toxins, Proc. Natl. Acad. Sci. U.S.A. 2007 Aug;104(33):13467-72.
• 2007
  Legrand E, Demar M, Volney B, Ekala MT, Quinternet M, Bouchier C, Fandeur T, Rogier C, Carme B, Puijalon OM, Esterre P, First case of emergence of atovaquone resistance in Plasmodium falciparum during second-line atovaquone-proguanil treatment in South America, Antimicrob. Agents Chemother. 2007 Jun;51(6):2280-1.
• 2007
  Cohen-Salmon M, Regnault B, Cayet N, Caille D, Demuth K, Hardelin JP, Janel N, Meda P, Petit C, Connexin30 deficiency causes instrastrial fluid-blood barrier disruption within the cochlear stria vascularis, Proc. Natl. Acad. Sci. U.S.A. 2007 Apr;104(15):6229-34.
• 2007
  Hardouin J, Lasserre JP, Canelle L, Duchateau M, Vlieghe C, Choquet-Kastylevsky G, Joubert-Caron R, Caron M, Usefulness of autoantigens depletion to detect autoantibody signatures by multiple affinity protein profiling, J Sep Sci 2007 Feb;30(3):352-8.
• 2007
  Stinear TP, Seemann T, Pidot S, Frigui W, Reysset G, Garnier T, Meurice G, Simon D, Bouchier C, Ma L, Tichit M, Porter JL, Ryan J, Johnson PD, Davies JK, Jenkin GA, Small PL, Jones LM, Tekaia F, Laval F, Daffé M, Parkhill J, Cole ST, Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer, Genome Res. 2007 Feb;17(2):192-200.
• 2007
  Noranate N, Durand R, Tall A, Marrama L, Spiegel A, Sokhna C, Pradines B, Cojean S, Guillotte M, Bischoff E, Ekala MT, Bouchier C, Fandeur T, Ariey F, Patarapotikul J, Le Bras J, Trape JF, Rogier C, Mercereau-Puijalon O, Rapid dissemination of Plasmodium falciparum drug resistance despite strictly controlled antimalarial use, PLoS ONE 2007;2(1):e139.
• 2006
  Murayama E, Kissa K, Zapata A, Mordelet E, Briolat V, Lin HF, Handin RI, Herbomel P, , Tracing hematopoietic precursor migration to successive hematopoietic organs during zebrafish development., Immunity 2006 Dec; 25(6): 963-75.
• 2006
  Vilasco M, Larrea E, Vitour D, Dabo S, Breiman A, Regnault B, Riezu JI, Eid P, Prieto J, Meurs EF, The protein kinase IKKepsilon can inhibit HCV expression independently of IFN and its own expression is downregulated in HCV-infected livers, Hepatology 2006 Dec;44(6):1635-47.
• 2006
  Louvel H, Bommezzadri S, Zidane N, Boursaux-Eude C, Creno S, Magnier A, Rouy Z, Médigue C, Saint Girons I, Bouchier C, Picardeau M, Comparative and functional genomic analyses of iron transport and regulation in Leptospira spp, J. Bacteriol. 2006 Nov;188(22):7893-904.
• 2006
  Hardouin J, Duchateau M, Canelle L, Vlieghe C, Joubert-Caron R, Caron M, Thiophilic adsorption revisited, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007 Jan;845(2):226-31.
• 2006
  Brüggemann H, Hagman A, Jules M, Sismeiro O, Dillies MA, Gouyette C, Kunst F, Steinert M, Heuner K, Coppée JY, Buchrieser C, Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila, Cell. Microbiol. 2006 Aug;8(8):1228-40.
• 2006
  Carré-Mlouka A, Méjean A, Quillardet P, Ashida H, Saito Y, Yokota A, Callebaut I, Sekowska A, Dittmann E, Bouchier C, de Marsac NT, A new rubisco-like protein coexists with a photosynthetic rubisco in the planktonic cyanobacteria Microcystis, J. Biol. Chem. 2006 Aug;281(34):24462-71.
• 2006
  Weber C, Guigon G, Bouchier C, Frangeul L, Moreira S, Sismeiro O, Gouyette C, Mirelman D, Coppee JY, Guillén N, Stress by heat shock induces massive down regulation of genes and allows differential allelic expression of the Gal/GalNAc lectin in Entamoeba histolytica, Eukaryotic Cell 2006 May;5(5):871-5.
• 2006
  Bougnoux ME, Diogo D, François N, Sendid B, Veirmeire S, Colombel JF, Bouchier C, Van Kruiningen H, d'Enfert C, Poulain D, Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract, J. Clin. Microbiol. 2006 May;44(5):1810-20.
• 2006
  Ariey F, Fandeur T, Durand R, Randrianarivelojosia M, Jambou R, Legrand E, Ekala MT, Bouchier C, Cojean S, Duchemin JB, Robert V, Le Bras J, Mercereau-Puijalon O, Invasion of Africa by a single pfcrt allele of South East Asian type, Malar. J. 2006;5:34.
• 2006
  Chaze T, Bouley J, Chambon C, Barboiron C, Picard B, Mapping of alkaline proteins in bovine skeletal muscle, Proteomics 2006 Apr;6(8):2571-5.
• 2006
  Kehr JC, Zilliges Y, Springer A, Disney MD, Ratner DD, Bouchier C, Seeberger PH, de Marsac NT, Dittmann E, A mannan binding lectin is involved in cell-cell attachment in a toxic strain of Microcystis aeruginosa, Mol. Microbiol. 2006 Feb;59(3):893-906.
• 2006
  Tien MT, Girardin SE, Regnault B, Le Bourhis L, Dillies MA, Coppée JY, Bourdet-Sicard R, Sansonetti PJ, Pédron T, Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells, J. Immunol. 2006 Jan;176(2):1228-37.
• 2006
  Mayer T, Jagla B, Wyler MR, Kelly PD, Aulner N, Beard M, Barger G, Többen U, Smith DH, Brandén L, Rothman JE, Cell-based assays using primary endothelial cells to study multiple steps in inflammation, Meth. Enzymol. 2006;414:266-83.
• 2006
  Hardouin J, Duchateau M, Joubert-Caron R, Caron M, Usefulness of an integrated microfluidic device (HPLC-Chip-MS) to enhance confidence in protein identification by proteomics, Rapid Commun. Mass Spectrom. 2006;20(21):3236-44.
• 2005
  Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW, Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae, Nature 2005 Dec;438(7071):1105-15.
• 2005
  Jambou R, Legrand E, Niang M, Khim N, Lim P, Volney B, Ekala MT, Bouchier C, Esterre P, Fandeur T, Mercereau-Puijalon O, Resistance of Plasmodium falciparum field isolates to in-vitro artemether and point mutations of the SERCA-type PfATPase6, Lancet 2005 Dec;366(9501):1960-3.
• 2005
  Ralph SA, Bischoff E, Mattei D, Sismeiro O, Dillies MA, Guigon G, Coppee JY, David PH, Scherf A, Transcriptome analysis of antigenic variation in Plasmodium falciparum–var silencing is not dependent on antisense RNA, Genome Biol. 2005;6(11):R93.
• 2005
  Grüner AC, Hez-Deroubaix S, Snounou G, Hall N, Bouchier C, Letourneur F, Landau I, Druilhe P, Insights into the P. y. yoelii hepatic stage transcriptome reveal complex transcriptional patterns, Mol. Biochem. Parasitol. 2005 Aug;142(2):184-92.
• 2005
  Khim N, Bouchier C, Ekala MT, Incardona S, Lim P, Legrand E, Jambou R, Doung S, Puijalon OM, Fandeur T, Countrywide survey shows very high prevalence of Plasmodium falciparum multilocus resistance genotypes in Cambodia, Antimicrob. Agents Chemother. 2005 Aug;49(8):3147-52.
• 2005
  Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, Kerhornou A, Aslett M, Bishop R, Bouchier C, Cochet M, Coulson RM, Cronin A, de Villiers EP, Fraser A, Fosker N, Gardner M, Goble A, Griffiths-Jones S, Harris DE, Katzer F, Larke N, Lord A, Maser P, McKellar S, Mooney P, Morton F, Nene V, O'Neil S, Price C, Quail MA, Rabbinowitsch E, Rawlings ND, Rutter S, Saunders D, Seeger K, Shah T, Squares R, Squares S, Tivey A, Walker AR, Woodward J, Dobbelaere DA, Langsley G, Rajandream MA, McKeever D, Shiels B, Tait A, Barrell B, Hall N, Genome of the host-cell transforming parasite Theileria annulata compared with T. parva, Science 2005 Jul;309(5731):131-3.
• 2005
  Jagla B, Aulner N, Kelly PD, Song D, Volchuk A, Zatorski A, Shum D, Mayer T, De Angelis DA, Ouerfelli O, Rutishauser U, Rothman JE, Sequence characteristics of functional siRNAs, RNA 2005 Jun;11(6):864-72.
• 2005
  Wyers F, Rougemaille M, Badis G, Rousselle JC, Dufour ME, Boulay J, Régnault B, Devaux F, Namane A, Séraphin B, Libri D, Jacquier A, Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase, Cell 2005 Jun;121(5):725-37.
• 2005
  Froment C, Uttenweiler-Joseph S, Bousquet-Dubouch MP, Matondo M, Borges JP, Esmenjaud C, Lacroix C, Monsarrat B, Burlet-Schiltz O, A quantitative proteomic approach using two-dimensional gel electrophoresis and isotope-coded affinity tag labeling for studying human 20S proteasome heterogeneity, Proteomics 2005 Jun;5(9):2351-63.
• 2005
  Moulédous L, Neasta J, Uttenweiler-Joseph S, Stella A, Matondo M, Corbani M, Monsarrat B, Meunier JC, Long-term morphine treatment enhances proteasome-dependent degradation of G beta in human neuroblastoma SH-SY5Y cells: correlation with onset of adenylate cyclase sensitization, Mol. Pharmacol. 2005 Aug;68(2):467-76.
• 2005
  Monot M, Honoré N, Garnier T, Araoz R, Coppée JY, Lacroix C, Sow S, Spencer JS, Truman RW, Williams DL, Gelber R, Virmond M, Flageul B, Cho SN, Ji B, Paniz-Mondolfi A, Convit J, Young S, Fine PE, Rasolofo V, Brennan PJ, Cole ST, On the origin of leprosy, Science 2005 May;308(5724):1040-2.
• 2005
  Najjar I, Baran-Marszak F, Le Clorennec C, Laguillier C, Schischmanoff O, Youlyouz-Marfak I, Schlee M, Bornkamm GW, Raphaël M, Feuillard J, Fagard R, Latent membrane protein 1 regulates STAT1 through NF-kappaB-dependent interferon secretion in Epstein-Barr virus-immortalized B cells, J. Virol. 2005 Apr;79(8):4936-43.
• 2005
  Forissier JE, Bonne G, Bouchier C, Duboscq-Bidot L, Richard P, Briault S, Moraine C, Dubourg O, Schwartz K, Komajda M, [Apical left ventricular aneurysm without atrio-ventricular block due to a lamin A/C gene mutation], Arch Mal Coeur Vaiss 2005 Jan;98(1):67-70.
• 2005
  Talla E, Anthouard V, Bouchier C, Frangeul L, Dujon B, The complete mitochondrial genome of the yeast Kluyveromyces thermotolerans, FEBS Lett. 2005 Jan;579(1):30-40.
• 2005
  Petit-Bertron AF, Pedron T, Gross U, Coppée JY, Sansonetti PJ, Cavaillon JM, Adib-Conquy M, Adherence modifies the regulation of gene expression induced by interleukin-10, Cytokine 2005 Jan;29(1):1-12.
• 2004
  Cazalet C, Rusniok C, Brüggemann H, Zidane N, Magnier A, Ma L, Tichit M, Jarraud S, Bouchier C, Vandenesch F, Kunst F, Etienne J, Glaser P, Buchrieser C, Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity, Nat. Genet. 2004 Nov;36(11):1165-73.
• 2004
  Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL, Genome evolution in yeasts, Nature 2004 Jul;430(6995):35-44.
• 2004
  Kim N, Bouchier C, Ekala MT, Mercereau-Puijalon O, Fandeur T, [Chemoresistance and polymorphism in falciparum malaria in Cambodia], Med Mal Infect 2004 Jun;34 Suppl 1:S61-4.
• 2004
  Jean D, Briolat V, Reysset G, , Oxidative stress response in Clostridium perfringens., Microbiology (Reading, Engl.) 2004 Jun; 150(Pt 6): 1649-1659.
• 2004
  Mlouka A, Comte K, Castets AM, Bouchier C, Tandeau de Marsac N, The gas vesicle gene cluster from Microcystis aeruginosa and DNA rearrangements that lead to loss of cell buoyancy, J. Bacteriol. 2004 Apr;186(8):2355-65.
• 2004
  Grimont PA, Grimont F, Efstratiou A, De Zoysa A, Mazurova I, Ruckly C, Lejay-Collin M, Martin-Delautre S, Regnault B, , International nomenclature for Corynebacterium diphtheriae ribotypes, Res. Microbiol. 2004 Apr;155(3):162-6.
• 2004
  Hommais F, Krin E, Coppée JY, Lacroix C, Yeramian E, Danchin A, Bertin P, GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli, Microbiology (Reading, Engl.) 2004 Jan;150(Pt 1):61-72.
• 2003
  Forissier JF, Bonne G, Bouchier C, Duboscq-Bidot L, Richard P, Wisnewski C, Briault S, Moraine C, Dubourg O, Schwartz K, Komajda M, Apical left ventricular aneurysm without atrio-ventricular block due to a lamin A/C gene mutation, Eur. J. Heart Fail. 2003 Dec;5(6):821-5.
• 2003
  Bougnoux ME, Tavanti A, Bouchier C, Gow NA, Magnier A, Davidson AD, Maiden MC, D'Enfert C, Odds FC, Collaborative consensus for optimized multilocus sequence typing of Candida albicans, J. Clin. Microbiol. 2003 Nov;41(11):5265-6.
• 2003
  Janvier M, Regnault B, Grimont P, Development and use of fluorescent 16S rRNA-targeted probes for the specific detection of Methylophaga species by in situ hybridization in marine sediments, Res. Microbiol. 2003 Sep;154(7):483-90.
• 2003
  Sielaff H, Dittmann E, Tandeau De Marsac N, Bouchier C, Von Döhren H, Börner T, Schwecke T, The mcyF gene of the microcystin biosynthetic gene cluster from Microcystis aeruginosa encodes an aspartate racemase, Biochem. J. 2003 Aug;373(Pt 3):909-16.
• 2003
  Sébillon P, Bouchier C, Bidot LD, Bonne G, Ahamed K, Charron P, Drouin-Garraud V, Millaire A, Desrumeaux G, Benaïche A, Charniot JC, Schwartz K, Villard E, Komajda M, Expanding the phenotype of LMNA mutations in dilated cardiomyopathy and functional consequences of these mutations, J. Med. Genet. 2003 Aug;40(8):560-7.
• 2003
  Desnoues N, Lin M, Guo X, Ma L, Carreño-Lopez R, Elmerich C, Nitrogen fixation genetics and regulation in a Pseudomonas stutzeri strain associated with rice, Microbiology (Reading, Engl.) 2003 Aug;149(Pt 8):2251-62.
• 2003
  Sylvius N, Duboscq-Bidot L, Bouchier C, Charron P, Benaiche A, Sébillon P, Komajda M, Villard E, Mutational analysis of the beta- and delta-sarcoglycan genes in a large number of patients with familial and sporadic dilated cardiomyopathy, Am. J. Med. Genet. A 2003 Jul;120A(1):8-12.
• 2003
  Guillemin I, Bouchier C, Garrigues T, Wisner A, Choumet V, Sequences and structural organization of phospholipase A2 genes from Vipera aspis aspis, V. aspis zinnikeri and Vipera berus berus venom. Identification of the origin of a new viper population based on ammodytin I1 heterogeneity, Eur. J. Biochem. 2003 Jul;270(13):2697-706.
• 2003
  Charniot JC, Pascal C, Bouchier C, Sébillon P, Salama J, Duboscq-Bidot L, Peuchmaurd M, Desnos M, Artigou JY, Komajda M, Functional consequences of an LMNA mutation associated with a new cardiac and non-cardiac phenotype, Hum. Mutat. 2003 May;21(5):473-81.
• 2003
  Milohanic E, Glaser P, Coppée JY, Frangeul L, Vega Y, Vázquez-Boland JA, Kunst F, Cossart P, Buchrieser C, Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA, Mol. Microbiol. 2003 Mar;47(6):1613-25.
• 2003
  Koszul R, Malpertuy A, Frangeul L, Bouchier C, Wincker P, Thierry A, Duthoy S, Ferris S, Hennequin C, Dujon B, The complete mitochondrial genome sequence of the pathogenic yeast Candida (Torulopsis) glabrata, FEBS Lett. 2003 Jan;534(1-3):39-48.
• 2001
  Hetet G, Grandchamp B, Bouchier C, Nicaud V, Tiret L, Roizès G, Desnos M, Schwartz K, Dorent R, Komajda M, , Idiopathic dilated cardiomyopathy: lack of association with haemochromatosis gene in the CARDIGENE study, Heart 2001 Dec;86(6):702-3.
• 2001
  Garapin A, Ma L, Pescher P, Lagranderie M, Marchal G, Mixed immune response induced in rodents by two naked DNA genes coding for mycobacterial glycosylated proteins, Vaccine 2001 Apr;19(20-22):2830-41.
• 2001
  Lefort J, Motreff L, Vargaftig BB, , Airway administration of Escherichia coli endotoxin to mice induces glucocorticosteroid-resistant bronchoconstriction and vasopermeation., Am J Respir Cell Mol Biol 2001 Mar; 24(3): 345-51.
• 2001
  Urdaci MC, Regnault B, Grimont PA, Identification by in situ hybridization of segmented filamentous bacteria in the intestine of diarrheic rainbow trout (Oncorhynchus mykiss), Res. Microbiol. 2001 Jan-Feb;152(1):67-73.
• 2000
  Sylvius N, Tesson F, Gayet C, Charron P, Bénaïche A, Peuchmaurd M, Duboscq-Bidot L, Feingold J, Beckmann JS, Bouchier C, Komajda M, A new locus for autosomal dominant dilated cardiomyopathy identified on chromosome 6q12-q16, Am. J. Hum. Genet. 2001 Jan;68(1):241-6.
• 2000
  Tesson F, Sylvius N, Pilotto A, Dubosq-Bidot L, Peuchmaurd M, Bouchier C, Benaiche A, Mangin L, Charron P, Gavazzi A, Tavazzi L, Arbustini E, Komajda M, Epidemiology of desmin and cardiac actin gene mutations in a european population of dilated cardiomyopathy, Eur. Heart J. 2000 Nov;21(22):1872-6.
• 2000
  Villarino A, Bouvet OM, Regnault B, Martin-Delautre S, Grimont PAD , Exploring the frontier between life and death in Escherichia coli: evaluation of different viability markers in live and heat- or UV-killed cells, Res. Microbiol. 2000 Nov;151(9):755-68.
• 2000
  Regnault B, Martin-Delautre S, Lejay-Collin M, Lefèvre M, Grimont PA, Oligonucleotide probe for the visualization of Escherichia coli/Escherichia fergusonii cells by in situ hybridization: specificity and potential applications, Res. Microbiol. 2000 Sep;151(7):521-33.
• 2000
  Schlegel L, Grimont F, Collins MD, Régnault B, Grimont PA, Bouvet A, Streptococcus infantarius sp. nov., Streptococcus infantarius subsp. infantarius subsp. nov. and Streptococcus infantarius subsp. coli subsp. nov., isolated from humans and food, Int. J. Syst. Evol. Microbiol. 2000 Jul;50 Pt 4:1425-34.
• 2000
  Regnault B, Martin-Delautre S, Grimont PA, Problems associated with the direct viable count procedure applied to gram-positive bacteria, Int. J. Food Microbiol. 2000 Apr;55(1-3):281-4.
• 2000
  Villarino A, Bouvet O, Regnault B, Delautre S, Grimont PA, Cellular activities in ultra-violet killed Escherichia coli, Int. J. Food Microbiol. 2000 Apr;55(1-3):245-7.
• 2000
  Jagla B, Schuchhardt J, Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites, Bioinformatics 2000 Mar;16(3):245-50.
• 1999
  Willig TN, Draptchinskaia N, Dianzani I, Ball S, Niemeyer C, Ramenghi U, Orfali K, Gustavsson P, Garelli E, Brusco A, Tiemann C, Pérignon JL, Bouchier C, Cicchiello L, Dahl N, Mohandas N, Tchernia G, Mutations in ribosomal protein S19 gene and diamond blackfan anemia: wide variations in phenotypic expression, Blood 1999 Dec;94(12):4294-306.
• 1999
  Autiero M, Culerrier R, Bouchier C, Basmaciogullari S, Gaubin M, El Marhomy S, Blanchet P, Paradis V, Jardin A, Guardiola J, Piatier-Tonneau D, Abnormal restriction pattern of PIP gene associated with human primary prostate cancers, DNA Cell Biol. 1999 Jun;18(6):481-7.
• 1998
  Cornélis F, Fauré S, Martinez M, Prud'homme JF, Fritz P, Dib C, Alves H, Barrera P, de Vries N, Balsa A, Pascual-Salcedo D, Maenaut K, Westhovens R, Migliorini P, Tran TH, Delaye A, Prince N, Lefevre C, Thomas G, Poirier M, Soubigou S, Alibert O, Lasbleiz S, Fouix S, Bouchier C, Lioté F, Loste MN, Lepage V, Charron D, Gyapay G, Lopes-Vaz A, Kuntz D, Bardin T, Weissenbach J, , New susceptibility locus for rheumatoid arthritis suggested by a genome-wide linkage study, Proc. Natl. Acad. Sci. U.S.A. 1998 Sep;95(18):10746-50.
• 1997
  Regnault B, Grimont F, Grimont PA, Universal ribotyping method using a chemically labelled oligonucleotide probe mixture, Res. Microbiol. 1997 Nov;148(8):649-59.
• 1997
  Autiero M, Bouchier C, Basmaciogullari S, Zaborski P, el Marhomy S, Martin M, Guardiola J, Piatier-Tonneau D, Isolation from a human seminal vesicle library of the cDNA for gp17, a CD4 binding factor, Immunogenetics 1997;46(4):345-8.
• 1997
  Bouvet A, Grimont F, Collins MD, Benaoudia F, Devine C, Regnault B, Grimont PA, Streptococcus infantarius sp. nov. related to Streptococcus bovis and Streptococcus equinus, Adv. Exp. Med. Biol. 1997;418:393-5.
• 1996
  Choumet V, Bouchier C, Délot E, Faure G, Saliou B, Bon C, Structure and function relationship of crotoxin, a heterodimeric neurotoxic phospholipase A2 from the venom of a South-American rattlesnake, Adv. Exp. Med. Biol. 1996;391:197-202.
• 1995
  Auffray C, Behar G, Bois F, Bouchier C, Da Silva C, Devignes MD, Duprat S, Houlgatte R, Jumeau MN, Lamy B, [IMAGE: molecular integration of the analysis of the human genome and its expression], C. R. Acad. Sci. III, Sci. Vie 1995 Feb;318(2):263-72.
• 1994
  Faure G, Choumet V, Bouchier C, Camoin L, Guillaume JL, Monegier B, Vuilhorgne M, Bon C, The origin of the diversity of crotoxin isoforms in the venom of Crotalus durissus terrificus, Eur. J. Biochem. 1994 Jul;223(1):161-4.
• 1993
  Scieux C, Grimont F, Regnault B, Bianchi A, Kowalski S, Grimont PA, Molecular typing of Chlamydia trachomatis by random amplification of polymorphic DNA, Res. Microbiol. 1993 Jun;144(5):395-404.
• 1992
  Scieux C, Grimont F, Regnault B, Grimont PA, DNA fingerprinting of Chlamydia trachomatis by use of ribosomal RNA, oligonucleotide and randomly cloned DNA probes, Res. Microbiol. 1992 Oct;143(8):755-65.
• 1992
  Grimont F, Verger JM, Cornelis P, Limet J, Lefèvre M, Grayon M, Régnault B, Van Broeck J, Grimont PA, Molecular typing of Brucella with cloned DNA probes, Res. Microbiol. 1992 Jan;143(1):55-65.
• 1991
  Bouchier C, Boyot P, Tesson F, Trémeau O, Bouet F, Hodgson D, Boulain JC, Ménez A, Notechis 11’2, a non-toxic phospholipase A2 from the venom of Notechis scutatus scutatus, Eur. J. Biochem. 1991 Dec;202(2):493-500.
• 1991
  Bouchier C, Boulain JC, Bon C, Ménez A, Analysis of cDNAs encoding the two subunits of crotoxin, a phospholipase A2 neurotoxin from rattlesnake venom: the acidic non enzymatic subunit derives from a phospholipase A2-like precursor, Biochim. Biophys. Acta 1991 Mar;1088(3):401-8.
• 1990
  Pérolat P, Grimont F, Regnault B, Grimont PA, Fournié E, Thevenet H, Baranton G, rRNA gene restriction patterns of Leptospira: a molecular typing system, Res. Microbiol. 1990 Feb;141(2):159-71.
• 1989
  Bon C, Bouchier C, Choumet V, Faure G, Jiang MS, Lambezat MP, Radvanyi F, Saliou B, Crotoxin, half-century of investigations on a phospholipase A2 neurotoxin, Acta Physiol Pharmacol Latinoam 1989;39(4):439-48.
• 1989
  Charriere-Bertrand C, Le Prince G, Bouchier C, Fages C, Tardy M, Nunez J, Expression of tubulin, GFAP and of their encoding mRNAs during the proliferation and differentiation of cultured astrocytes, Neurochem. Int. 1989;15(2):215-22.
• 1988
  Ducancel F, Guignery-Frelat G, Bouchier C, Ménez A, Boulain JC, Sequence analysis of a cDNA encoding a PLA2 from the sea-snake Aipysurus laevis, Nucleic Acids Res. 1988 Sep;16(18):9048.
• 1988
  Bouchier C, Ducancel F, Guignery-Frelat G, Bon C, Boulain JC, Ménez A, Cloning and sequencing of cDNAs encoding the two subunits of Crotoxin, Nucleic Acids Res. 1988 Sep;16(18):9050.
• 1988
  Ducancel F, Guignery-Frelat G, Bouchier C, Ménez A, Boulain JC, Complete amino acid sequence of a PLA2 from the tiger snake Notechis scutatus scutatus as deduced from a complementary DNA, Nucleic Acids Res. 1988 Sep;16(18):9049.
• 1985
  Turut P, Pfaelzer I, Regnault B, [Idiopathic massive preretinal hemorrhage. Etiopathogenic hypothesis. Prognosis], Bull Soc Ophtalmol Fr 1985 Feb;85(2):229-32, 235.
• 1977
  Harris WS, Marai L, Myher JJ, Subbiah MT, Bile acid ethyl esters. Their infrequent formation during routine bile acid analysis and identification by gas chromatography and mass spectrometry, J. Chromatogr. 1977 Jan;131:437-41.
• 1972
  Nagradova NK, Asriiants RA, Ivanov MV, [Binding of 1-anilino-8-naphthalene sulfonate by glyceraldehyde-3-phosphate dehydrogenase], Biokhimiia 1972 Mar-Apr;37(2):299-304.
• 1971
  Deutsch V, Frankl O, Drory Y, Eliahou H, Braf ZF, Bilateral renal cortical necrosis with survival through the acute phase with a note on the value of selective nephroangiography, Am. J. Med. 1971 Jun;50(6):828-34.
• 1971
  , [Introduction of medical records. 3. Record of cardiology], Lyon Med 1971 Feb;225(4):325-8.