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About

EXPERTISE
Bioinformatics-Biostatistics: Gene-expression analysis, DNA/RNA methylation analysis, correlation of heterogeneous “omics” data, machine learning, multivariate analysis.

Programming language: Java, R, Python, Bash, C, Eclipse RCP.

Biology: Microbiology, RNA regulation in Bacteria, genome evolution, protein translation regulation,

Physics – Mathematics: Statistics, molecular modeling, stochastic processes, non-linear dynamical systems.

Courses

Software

CV

2015 – Present : Senior Bioinformatician, Permanent Research Engineer, Bioinformatic and Biostatistics HUB, Institut Pasteur, Paris
– Provide various bioinformatic and biostatistic services to biologists from Institut Pasteur
– Development of analysis workflow for mouse epitranscriptomic datasets
– Development of a platform for creation of multi-omics websites (4 websites created)
Bacnet
– Managed thematic group inside HUB Bioinformatic and biostatistics
– Managed 2 master student internships
– Co-organizer of C3BI seminars (~40 people every 2 weeks) https://c3bi.pasteur.fr/seminars/former-seminars/
– 2 Talks, 3 Posters presented in international conference in the last 2 years.

2011 – 2015 : Post-Doctoral researcher – UIBC, Institut Pasteur, Paris
– Analysis of small RNA regulation in Listeria species
– Comparison of genome, transcriptome and phenotype of different listeria strains
– Development of an integrated platform for analysis and visualization of listeria omics datasets: listeriomics.pasteur.fr/
– Help biologists from the laboratory for the statistical analysis of their datasets

2008-2010 : PhD thesis – Institut de Recherche Interdisciplinaire
Dimensionality reduction and pathway network analysis of transcriptome data: Application to T-cell characterization”
Supervised by Arndt Benecke and Annick Lesne
Ecole Normale supérieure de Paris – https://www.ens.fr/
Institut des Hautes Etudes Scientifiques – https://www.ihes.fr/
Ecole Doctorale Frontière du Vivant – https://cri-paris.org/fire/
Funded by Agence Nationale de la Recherche sur le Sida – http://www.anrs.fr/fr

– Development of a new type of multivariate analysis for deciphering gene regulation in human immunological cells
– Analysis of RNA microarrays of T-cell
– Development of a pathway analysis software for human transcriptomic datasets.

2003 – 2007: Magister of Science, Theoretical Physics – Mention Bien : Dynamical systems and statistics of complex matter -Université Paris 7, Paris (France)
2000 – 2003: Classe préparatoire Mathématiques-Physique, Lycée Camille Jullian, Bordeaux

Publications

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