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Cours
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
2023-10-23 09:30:00
2024-06-28 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2023 2024
This training program in statistics, bioinformatics and image analysis, financed by INCEPTION program, begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, […]
25-28 Rue du Docteur Roux, Paris, France
PHINDaccess – Comparative Genomics
Comparative genomics is a field of biological research in which a variety of tools are used to compare genome sequences of different species. By carefully comparing characteristics that define various organisms, researchers can pinpoint […]
2022-03-16 09:00:00
2022-03-18 17:00:00
Europe/Paris
PHINDaccess – Comparative Genomics
Comparative genomics is a field of biological research in which a variety of tools are used to compare genome sequences of different species. By carefully comparing characteristics that define various organisms, researchers can pinpoint […]
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
2022-10-21 09:30:00
2023-06-30 18:00:00
Europe/Paris
Bioinformatics program for PhD students 2022-2023
This training program in statistics, bioinformatics and image analysis begins with a mandatory common core during which we will present all the tracks, and follow short courses on computer science, reproducible research, experimental design […]
25-28 Rue du Docteur Roux, Paris, France
PHINDaccess – Functional OMICs
This course will explore state-of-the-art knowledge and experiences to better understand complex biological systems. The main objective is to provide participants with a solid foundation on the current bioinformatics approaches and tools to better […]
2022-05-23 09:00:00
2022-05-27 17:00:00
Europe/Paris
PHINDaccess – Functional OMICs
This course will explore state-of-the-art knowledge and experiences to better understand complex biological systems. The main objective is to provide participants with a solid foundation on the current bioinformatics approaches and tools to better […]
Institut Pasteur، Tunis, Tunisia
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
2020-10-15 09:30:00
2021-06-03 17:00:00
Europe/Paris
Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
25-28 Rue du Dr Roux, 75015 Paris, France
High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics
The National Center for Aquaculture and Marine Research (CENAIM) of the Polytechnic School of the Litoral (Ecuador), the Computational Biology and Microbial Ecology Group (BCEM) of the Universidad de los Andes (Colombia) and the […]
2018-09-13 09:00:00
2018-09-21 17:00:00
Europe/Paris
High Throughput Sequencing Data Analysis on Genomics, Metagenomics and Transcriptomics
The National Center for Aquaculture and Marine Research (CENAIM) of the Polytechnic School of the Litoral (Ecuador), the Computational Biology and Microbial Ecology Group (BCEM) of the Universidad de los Andes (Colombia) and the […]
Escuela superior politécnica del litoral, Guayaquil, Ecuador
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
2016-05-10 09:00:00
2016-06-28 12:00:00
Europe/Paris
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
28 Rue du Dr Roux, Paris, France
Training: analysis of the transcriptome by RNAseq
The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […]
2016-10-10 09:00:00
2016-10-14 17:00:00
Europe/Paris
Training: analysis of the transcriptome by RNAseq
The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […]
28 Rue du Docteur Roux, Paris, France
Projets
Logiciel
Outils
CV
Senior Bioinformatician
November 2015– Present. Institut Pasteur, Paris
PostDoc fellow
October 2013 – October 2015. Swiss Institute of Bioinformatics. Bioinformatics Core Facility (BCF). Lausanne, Switzerland.
Phd fellow
September 2006 – December 2012. School of Bioengineering. Rice University. Computational Biology.
Visiting Scholar
January 2011 – May 2013. National Centre for Biotechnology (CNB-CSIC). Computational Systems Biology Group. Universidad Autónoma, Madrid, Spain.
Visiting Scholar
September 2009 – December 2010. Spanish National Cancer Centre. Structural Biology and Biocomputing Programme, Madrid, Spain.
Magister of Science
Publications
Télécharger-
2024Leptospira interrogans biofilm transcriptome highlights adaption to starvation and general stress while maintaining virulence., npj Biofilms and Microbiomes, 2024, 10 (1), pp.95. ⟨10.1038/s41522-024-00570-0⟩.
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2024A regionally based precision medicine implementation initiative in North Africa:The PerMediNA consortium., Transl Oncol 2024 Jun; 44(): 101940.
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2023Transcriptome profiling of human col\onic cells exposed to the gut pathobiont Streptococcus gallolyticus subsp. gallolyticus., PLoS One 2023 ; 18(11): e0294868.
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2023Hemostasis defects underlying the hemorrhagic syndrome caused by Mammarenaviruses in a cynomolgus macaque model., Blood 2023 Sep; (): .
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2023Rapid protection induced by a single-shot Lassa vaccine in male cynomolgus monkeys., Nat Commun 2023 Mar; 14(1): 1352.
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2023A MOPEVAC multivalent vaccine induces sterile protection against New World arenaviruses in non-human primates., Nat Microbiol 2023 Jan; 8(1): 64-76.
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2023Phenotypes controlled by the Brucella abortus two component system BvrR/BvrS are differentially impacted by BvrR phosphorylation., Front Microbiol 2023 ; 14(): 1148233.
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2023Multi-Modal SARS-CoV-2 Proteins Interactomics Unveil Spatial Patterns of Invasion Featuring 151 Contacts with Human Proteins Essential for Infection, 2023.
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2022Pathogenesis of recent Lassa virus isolates from lineages II and VII in cynomolgus monkeys., Virulence 2022 12; 13(1): 654-669.
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2022Infection of Human Endothelial Cells with Lassa Virus Induces Early but Transient Activation and Low Type I IFN Response Compared to the Closely-Related Nonpathogenic Mopeia Virus., Viruses 2022 Mar; 14(3): .
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