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Cours
Bioinformatics program for PhD students
This 50-hour training program required for all Institut Pasteur PhD students begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then chooses […]
2019-11-12 09:00:00
2019-11-12 16:30:00
Europe/Paris
Bioinformatics program for PhD students
This 50-hour training program required for all Institut Pasteur PhD students begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then chooses […]
25-28 Rue du Dr Roux, 75015 Paris, France
Introduction à la phylogénie moléculaire
Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]
2019-02-18 09:00:00
2019-02-22 17:00:00
Europe/Paris
Introduction à la phylogénie moléculaire
Ce cours d’introduction à la phylogénie a pour objectif d’apporter les connaissances théoriques et les bonnes pratiques d’analyse de données par les logiciels de phylogénie. Il est ouvert aux formations doctorales et aux professionnels […]
28 Rue du Dr Roux, Paris, France
INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS
Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]
2017-12-18 09:30:00
2017-12-22 17:30:00
Europe/Paris
INTRODUCTION À LA PHYLOGÉNIE MOLÉCULAIRE : CONCEPTS, METHODES ET OUTILS
Nous proposons une formation classique à la phylogénie moléculaire avec des cours théoriques portant sur les trois méthodes de construction d’arbres phylogénétiques : distance, parcimonie et maximum de vraisemblance. Nous expliquerons les concepts généraux […]
25-28 Rue du Dr Roux, 75015 Paris, France
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
2016-05-10 09:00:00
2016-06-28 12:00:00
Europe/Paris
Morning session – Introduction to NGS data analysis
The Hub of Bioinformatics and Biostatistics at the Institut Pasteur organizes thematic courses open to everybody. The second session, entitled “Introduction to NGS data analysis” will take place every Tuesday, from the May 10th […]
28 Rue du Dr Roux, Paris, France
C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018
General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
2018-10-22 08:00:00
2018-10-27 19:00:00
Europe/Paris
C3BI Course: Introduction to Molecular Phylogenetics – Hong Kong 2018
General Information: This introductory course aims to give the basic theoretical and practical concepts, best practices, and software necessary to start working on molecular phylogenetics and its applications to epidemiology. The course will have […]
HKU-Pasteur Research Pole HKJC Building for Interdisciplinary Research 5 Sassoon Road, Pokfulam, Hong Kong
Projets Transversaux
Projets
Logiciel
CV
(EN)
- 2015- : Institut Pasteur: Senior bioinformatician
Development of new methodologies and algorithms to tackle the increasing amount of sequencing data, in the field of evolution and molecular phylogeny.
- 2010-2015 : GenoSplice Technology: Bioinformatics project manager
In charge of next generation sequencing projects
- 2009-2010 : University of Lausanne: Post-doc
Integration and analysis of Next Generation Sequencing data (small RNAs).
- 2005-2008 : University Paris-Sud : PhD
Integration, querying and analysis of comparative genomics data.
Publications
Télécharger-
2019NGPhylogeny.fr: new generation phylogenetic services for non-specialists, Nucleic Acids Res. 2019 Jul;47(W1):W260-W265.
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2019Distribution and asymptotic behavior of the phylogenetic transfer distance, J Math Biol 2019 Jul;79(2):485-508.
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2018Renewing Felsenstein’s phylogenetic bootstrap in the era of big data, Nature 2018 Apr;.
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2018Identification of novel recurrent ETV6-IGH fusions in primary central nervous system lymphoma, Neuro-oncology 2018 Feb;.
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2017Detecting splicing patterns in genes involved in hereditary breast and ovarian cancer, Eur. J. Hum. Genet. 2017 Oct;25(10):1147-1154.
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2017Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities, Future Generation Computer Systems.
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2016Targeted Intron Retention and Excision for Rapid Gene Regulation in Response to Neuronal Activity, Neuron 2016 Dec;92(6):1266-1278.
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2015Molecular analyses of juvenile granulosa cell tumors bearing AKT1 mutations provide insights into tumor biology and therapeutic leads, Hum. Mol. Genet. 2015 Dec;24(23):6687-98.
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2014Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma, Nucleic Acids Res. 2014 Dec;42(21):13194-205.
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2013Valproic acid causes proteasomal degradation of DICER and influences miRNA expression, PLoS ONE 2013;8(12):e82895.
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