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Workshop: Bacterial RNAseq
We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […]
2016-06-06 09:00:00
2016-06-10 17:00:00
Europe/Paris
Workshop: Bacterial RNAseq
We propose a skills training for PhD students on Bacterial RNAseq experiments Using total RNAs, we will i) enrich the mRNAs by depleting the rRNAs ; ii) prepare and sequence cDNA library and iii) analyse […]
28 Rue du Docteur Roux, Paris, France
Training: analysis of the transcriptome by RNAseq
The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […]
2016-10-10 09:00:00
2016-10-14 17:00:00
Europe/Paris
Training: analysis of the transcriptome by RNAseq
The Transcriptome and Epigenome platform of the Biomics pole is organizing a one week (October 10, 2016 – October 14, 2016) training session dedicated to the analysis of the transcriptome by RNAseq. It is […]
28 Rue du Docteur Roux, Paris, France
Projets
Logiciel
Outils
Anciennes Équipes
CV
FORMER PROFESSIONAL EXPERIENCE:
2011 – 2012 : Bioinformatics Engineer at Institut Pasteur in the platform Genotyping of Pathogens and Public health (PF8)
2009 – 2011 : Project Manager at MEDIT SA
(MED-SuMo server management: new functionalities and sources maintenance, Scientific validation, Prototype implementation for PPI comparison with MED-SuMo)
2006 – 2009 : Genome Analysis and Molecular Modelling PhD. at MEDIT SA / Paris-Diderot Université.
Title: Implémentation d’une méthode de classification de surfaces d’interactions protéiques et optimisation et extension du logiciel MED-SuMo (6 publications).
EDUCATION:
2009 : Molecular Modelling/Bioinformatics PhD. MEDIT SA / Paris-Diderot University (Paris VII)
2005 : Master 2 recherche en Biologie-Informatique, Paris-Diderot University (Paris VII)
2004 : Licence et Maîtrise d’Informatique, Université UPMC (Paris VI)
Publications
Télécharger-
2021The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators., Bioinformatics 2021 Apr; 37(1): 89-96.
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2019NGPhylogeny.fr: new generation phylogenetic services for non-specialists, Nucleic Acids Res. 2019 Jul;47(W1):W260-W265.
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2018Community-Driven Data Analysis Training for Biology, Cell Syst 2018 Jun;6(6):752-758.e1.
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2017Common and phylogenetically widespread coding for peptides by bacterial small RNAs, BMC Genomics 2017 07;18(1):553.
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2017Galaxy@pasteur, Mareuil F, Doppelt-Azeroual O and Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services [version 1; not peer reviewed]. F1000Research 2017, 6:1030 (poster) (doi: 10.7490/f1000research.1114334.1) .
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2017ReGaTE: Registration of Galaxy Tools in Elixir, Gigascience 2017 Jun;6(6):1-4.
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2016MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data, Correia D, Doppelt-Azeroual O, Denis JB et al. MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data. F1000Research 2016, 4:86 (doi: 10.12688/f1000research.6139.3) .
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2015Tools and data services registry: a community effort to document bioinformatics resources, Nucleic Acids Res. 2015 Nov;.
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2010Fast and automated functional classification with MED-SuMo: an application on purine-binding proteins, Protein Sci. 2010 Apr;19(4):847-67.
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2009Analysis of HSP90-related folds with MED-SuMo classification approach, Drug Des Devel Ther 2009;3:59-72.
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