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Bioinformatics program for PhD students 2020-2021
This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […]
2020-10-15 09:30:00 2021-06-03 17:00:00 Europe/Paris Bioinformatics program for PhD students 2020-2021 This mandatory training program, required for all Institut Pasteur PhD students, begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then can […] 25-28 Rue du Dr Roux, 75015 Paris, France
Oncobiomics – THE (heterogenity tumor ecosystem)
Marc Monot (PI)
The Oncobiomics project is conducted in the HTE (heterogenity tumor ecosystem) national program launched by the cancer nation institute (Inca) in the third national cancer plan 2014-2019. It’s a consortium project involving 8 teams […]
Protected: Pasteur Human Genome
Thomas Bourgeron (PI)
There is no excerpt because this is a protected post.
A personal database system for large scale quantitative results exploration (Cassandre, PTR 463)
Christophe Malabat (PI)
Cassandre is a project of personal database system, integrating a “user-friendly” interface to manage and explore multiple sets of large-scale experimental results in biology. Large-scale experiments that generate quantitative data, such as changes in […]
Diversity and stability of eukaryotic transcripts
Alain Jacquier (PI)
We focus on RNA quality control mechanisms and their consequences for the cells. Our previous studies revealed, for example, unexpected properties of the transcription process, such as its high pervasiveness and the intrinsic bi-directionality […]
Genome-wide genetic screens by GIM (Genetic Interactions Mapping)
Cosmin Saveanu (PI)
To explore the effects of combining mutations and thus, be able to better understand complex functional interactions in a cell, we developed a novel genetic screening method that combines the exhaustivity of the yeast […]
Counter RNAseq Window (CRAW)
Bertrand Neron (PI)
CRAW is a package which aim to compute and visualize the coverage of RNA seq experiments. The main feature of this tools is the coverage is computed on the both strands, and is centred […]
SHAMAN: SHiny Application for Metagenomic ANalysis
Amine Ghozlane (PI)
SHAMAN is a SHiny Application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization. SHAMAN is based on DESeq2 R package [Anders and Huber 2010] for the analysis of metagenomic data, […]
2021Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast., Nucleic Acids Res 2021 09; 49(15): 8535-8555.
2020Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast, biorxiv.
2020SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis., BMC Bioinformatics 2020 Aug; 21(1): 345.
2018Antisense transcriptional interference mediates condition-specific gene repression in budding yeast, Nucleic Acids Res. 2018 May;.
2017Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans, Front Cell Infect Microbiol 2017;7:10.
2016Identification of Links Between Cellular Pathways by Genetic Interaction Mapping (GIM) (book chapter), Yeast Functional Genomics: Methods and Protocols, 2015 Aug.
2015Quality control of transcription start site selection by nonsense-mediated-mRNA decay, Elife 2015;4.
2014Long open reading frame transcripts escape nonsense-mediated mRNA decay in yeast, Cell Rep 2014 Feb;6(4):593-8.
2013Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products, Proc. Natl. Acad. Sci. U.S.A. 2013 Mar;110(13):5046-51.
2012Sodium selenide toxicity is mediated by O2-dependent DNA breaks, PLoS ONE 2012;7(5):e36343.
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