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Bioinformatics program for PhD students
This 50-hour training program required for all Institut Pasteur PhD students begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then chooses […]
2019-11-12 09:00:00 2019-11-12 16:30:00 Europe/Paris Bioinformatics program for PhD students This 50-hour training program required for all Institut Pasteur PhD students begins with a group of common core courses including a knowledge base in reproducible research, R Programming and Statistics. Each student then chooses […] 25-28 Rue du Dr Roux, 75015 Paris, France
Introduction to Application development in Shiny
L’Institut Français de Bioinformatique organise en partenariat avec le SIB (Swiss Institute of Bioinformatics) une formation au package R-Shiny les 9 et 10 juillet 2019 à l’I. Pasteur (Paris). L’objectif de la formation est […]
2019-09-12 10:00:00 2019-09-13 18:00:00 Europe/Paris Introduction to Application development in Shiny L’Institut Français de Bioinformatique organise en partenariat avec le SIB (Swiss Institute of Bioinformatics) une formation au package R-Shiny les 9 et 10 juillet 2019 à l’I. Pasteur (Paris). L’objectif de la formation est […] 25-28 Rue du Dr Roux, 75015 Paris, France
S. cerevisiae gene regulation in quiescence
Gwenaël Badis-Breard (PI)
In wild life, yeast cells are able to survive in severe conditions, without nutriment for a long period of time because the cell is able to enter in stationary phase. During this phase, the […]
Protected: Pasteur Human Genome
Thomas Bourgeron (PI)
There is no excerpt because this is a protected post.
A personal database system for large scale quantitative results exploration (Cassandre, PTR 463)
Christophe Malabat (PI)
Cassandre is a project of personal database system, integrating a “user-friendly” interface to manage and explore multiple sets of large-scale experimental results in biology. Large-scale experiments that generate quantitative data, such as changes in […]
Diversity and stability of eukaryotic transcripts
Alain Jacquier (PI)
We focus on RNA quality control mechanisms and their consequences for the cells. Our previous studies revealed, for example, unexpected properties of the transcription process, such as its high pervasiveness and the intrinsic bi-directionality […]
Non-sense mediated mRNA decay mechanisms
Cosmin Saveanu (PI)
Non-sense mediated mRNA decay (NMD) is a fundamental and conserved mechanism with a major role in shaping the levels of individual RNAs in a eukaryotic cell by efficiently removing RNAs in which a stop […]
Genome-wide genetic screens by GIM (Genetic Interactions Mapping)
Cosmin Saveanu (PI)
To explore the effects of combining mutations and thus, be able to better understand complex functional interactions in a cell, we developed a novel genetic screening method that combines the exhaustivity of the yeast […]
Counter RNAseq Window (CRAW)
Bertrand Neron (PI)
CRAW is a package which aim to compute and visualize the coverage of RNA seq experiments. The main feature of this tools is the coverage is computed on the both strands, and is centred […]
SHAMAN: SHiny Application for Metagenomic ANalysis
Amine Ghozlane (PI)
SHAMAN is a SHiny Application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization. SHAMAN is based on DESeq2 R package [Anders and Huber 2010] for the analysis of metagenomic data, […]
2018Antisense transcriptional interference mediates condition-specific gene repression in budding yeast, Nucleic Acids Res. 2018 May;.
2017Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans, Front Cell Infect Microbiol 2017;7:10.
2016Identification of Links Between Cellular Pathways by Genetic Interaction Mapping (GIM) (book chapter), Yeast Functional Genomics: Methods and Protocols, 2015 Aug.
2015Quality control of transcription start site selection by nonsense-mediated-mRNA decay, Elife 2015;4.
2014Long open reading frame transcripts escape nonsense-mediated mRNA decay in yeast, Cell Rep 2014 Feb;6(4):593-8.
2013Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products, Proc. Natl. Acad. Sci. U.S.A. 2013 Mar;110(13):5046-51.
2012Sodium selenide toxicity is mediated by O2-dependent DNA breaks, PLoS ONE 2012;7(5):e36343.
2012The yeast RPL9B gene is regulated by modulation between two modes of transcription termination, EMBO J. 2012 May;31(10):2427-37.
2009Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks, Bioinformatics 2009 Oct;25(19):2617-8.
2009Widespread bidirectional promoters are the major source of cryptic transcripts in yeast, Nature 2009 Feb;457(7232):1038-42.
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